TCONS_00073170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073170
Unique NameTCONS_00073170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073170 ID=TCONS_00073170|Name=TCONS_00073170|organism=Clytia hemisphaerica|type=transcript|length=662bp
gggacttCCAAAAACCGATAAACCGCGCAAAAATAGCTCGttcaccgata
aaccgacaaAATTTATCCTCTTCACCGACACCAACTTTTTACTCTTGCTT
CAAAAAAGGTCTGTAGCTCTTAATAAAGTAGACTGCATGCATCCCCGAAA
TTTTTGTAGCAAAACTTACTCATAATCCCCAATGCATGCTGGCAGGAATT
CAAATTGTTGTTTAGGAGGTAGCaggaggcacaaccatggtttgcgccga
cggaaaatttttcagtttaggctaaaaacgctctttttagacactttttt
ccgaaaataagcTGGCTTAGTGAATCAATACTATTCAATACGGGTTTCTA
CATTTATTATGTTGGTTTCCCTCGATGGagaaaacttttgtattttctca
ACCCTCCATGCGAGCGAAGTgagcgagaaaaaaattgatggacTTATTTG
TACCGAGATTTGTGCAAGTTACTTGTCCACGAAAATTATAATCTCTAAAA
TCGTGTTTGGAAAAAGCATCTTTTGAGGCCCTAAAAGTATCACTGGACTG
GACTATTTTATTTCCTGCTGGTCATATATACACAGTAGAGTGGTGGGTAG
GTCAAGGGTGGGGAagcaaaagtagaattttggctGAAGGCGCCCCCTAG
GCATATTCTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_87:2929..3590

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073170 ID=TCONS_00073170|Name=TCONS_00073170|organism=Clytia hemisphaerica|type=transcript|length=662bp|location=Sequence derived from alignment at scaffold_87:2929..3590 (Clytia hemisphaerica)
GCCAGAATATGCCTAGGGGGCGCCTTCagccaaaattctacttttgctTC
CCCACCCTTGACCTACCCACCACTCTACTGTGTATATATGACCAGCAGGA
AATAAAATAGTCCAGTCCAGTGATACTTTTAGGGCCTCAAAAGATGCTTT
TTCCAAACACGATTTTAGAGATTATAATTTTCGTGGACAAGTAACTTGCA
CAAATCTCGGTACAAATAAgtccatcaatttttttctcgctcACTTCGCT
CGCATGGAGGGTtgagaaaatacaaaagttttctCCATCGAGGGAAACCA
ACATAATAAATGTAGAAACCCGTATTGAATAGTATTGATTCACTAAGCCA
gcttattttcggaaaaaagtgtctaaaaagagcgtttttagcctaaactg
aaaaattttccgtcggcgcaaaccatggttgtgcctcctGCTACCTCCTA
AACAACAATTTGAATTCCTGCCAGCATGCATTGGGGATTATGAGTAAGTT
TTGCTACAAAAATTTCGGGGATGCATGCAGTCTACTTTATTAAGAGCTAC
AGACCTTTTTTGAAGCAAGAGTAAAAAGTTGGTGTCGGTGAAGAGGATAA
ATTttgtcggtttatcggtgaaCGAGCTATTTTTGCGCGGTTTATCGGTT
TTTGGaagtccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045382XLOC_045382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073170-exon-scaffold_87-1491911889:2929..3590TCONS_00073170-exon-scaffold_87-1491911889:2929..3590Clytia hemisphaericaexon
TCONS_00073170-exon-scaffold_87-1510915933:2929..3590TCONS_00073170-exon-scaffold_87-1510915933:2929..3590Clytia hemisphaericaexon
TCONS_00073170-exon-scaffold_87-1575043694:2929..3590TCONS_00073170-exon-scaffold_87-1575043694:2929..3590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:2929..3590 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313269	0.534602	0.532049	0.954713	0.643342	0.400095	0.512607	0.848377	0	0.163495	0	0.626802	0.228363	0.239884	0.446398	0.805015	0.72616	1.05486	0.592081	0.0884651	0.605773	0.242189	0.371445	0.0866712	1.66893	0.675401	0.429554	0	0.181978	0.476113
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top