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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073086 ID=TCONS_00073086|Name=TCONS_00073086|organism=Clytia hemisphaerica|type=transcript|length=1950bp
CTAATTATAAATATGTAATATGGTATAAAATAGTTTGATAGAATCTTATA
AAATTTCATAAAGGGAAGGATACAAAACTATCAATATTAATAATGTTCGC
TTCATATTAGgtgattttgatgaatttccTTTTTGCTTTTCCTCCATTTT
TCcaatgtttttcaaatattggTGGAAAATGTATTCAGTAAGCAACTAGT
TTTCAATACCCAAATAATTAAATAATGAAGACGGAAGATTTGCTTTAAAT
AATTCATTATAAGTAAACGATGTCAAAACAGCAAATCTTGACAAATATtt
caaagatttattttttttttcttttcaatatcatTGCAAGCCATTTTAAA
ACATAACGGTCCAAGTCTCGTAGCATTTTGAAGATTATCTTTACGAAAAG
TCATCCCAATTTCTTCATTGTTCCAATTTACAGAATAGCAAGGATGTGAA
TTTTCAGGAGAAATAATTTGGTGAACAACTTCTGTAGTAGATAAATCAAT
TGCCATGTAAAATTCAGGGTGAAATACATCCCTTGTGGTACAGTAAAATG
GCATAACAAGGCGATCGAACTTCTTGATAGGGGCACGCACTCTCAAGTCC
CTATCTCTATATTCTACTGGTACTTTCACGCAGGGAATGaagttttttgt
ttcatttattGACAAAAGAACCCCATTCTCCAGTTTTAAAACTCTTAATT
CAAGGTCCTCCAATTCGCCATAACCATTATAAAGAAATATGTAATTTGAA
TGTTTAAGATCAACAACATTAAACATCCACGATTCAATGTATTCTAAATC
ATACGAATATAAAAAATTACCAGAATAATCACATTCAAGGATCTTTAAGT
TTATCATATCTTCACTATCTTCAATATaagaccttttaaagaaaaatatt
ttgtccttAGTATATTCCCTTCTCGCAAATACTGATCCACCAGCGGTTTC
GAAATCTATAACCAATCTTCTCTCGTGACAAAGTTGATCTTTTTGTATCT
TGATAAAATCCAGATAGTTGTATTTCTCGTCCTGGTTACTCTCATAATAC
TTAGTAAAATAACTGCTTATAAGTAAAGTGGGATTCTCGTGGCCAAGAAA
TTCTGCATATTTACAAGTTATCGAGTTGAATAATTGATCATATGTCAAAG
ACAGATCTGGAGTGGATGCTtcgtcatcaatttttgaatCATGATGCTGC
AAATCTCTATTTAAATCAGCTTTAAGTGACTCTGGTGAACCATGTTCCCT
GTTTAGATTTTGACTTTGTGATTCTGAGGGCAATTCAAAAAACGATGTAG
GTCTACTAGATTCATCGTTCGAATCTTGATTGTACGAATCTTCAAAGATA
CTAGCCATAAAAGATAGATCTGGTGAATTTTGGGGTTCTGAAAAATCCTC
AGGATTATAAAATGTTGGTGTTCTTGGTGGTGATTCTGGTTCAGTTGATT
CAggaatttttaaatctttgccATTAAGCTCGTCAAAAAGATCAACAATG
TTGTAATTATAAAGATCCATTACAGTTTCATGACGTTCGTTTGTTGGGTA
TGTTTGTATGATATGAACCAATACACCACTGGTtgaattgaaaacatttt
ctcgGTGACCATCTAGTTCAGTTTTTGGTAAGCTGATAATTATTCGACTG
TGTACCCATTGGAATTCTTCTATATCGAATTTGATCACGTGAACgatatt
ttcttccttttcttcttgtAGGATCAAATAATATTTACCAGTGTGGAAGA
ACCCTTGCGCATGCTCGTTGGAGTAGCTTGAAGTGCTTGATACAGAAAAA
TTACCCAATAACAAAGGTGGAATATCTCTATTTTCGTATTCACGTGGAAT
GAACCATGATTTCTTAATGCTGTTATACATTGTTATCTGTTTCTTTTTAC
CTTAAAAATAGAGGAAAGTGATATTGAATTCAATGTTCAGTGTCACAGTC Run BLAST on NCBI transcript from alignment at scaffold_86:1396082..1402681- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073086 ID=TCONS_00073086|Name=TCONS_00073086|organism=Clytia hemisphaerica|type=transcript|length=6600bp|location=Sequence derived from alignment at scaffold_86:1396082..1402681- (Clytia hemisphaerica)
CTAATTATAAATATGTAATATGGTATAAAATAGTTTGATAGAATCTTATA
AAATTTCATAAAGGGAAGGATACAAAACTATCAATATTAATAATGTTCGC
TTCATATTAGGTGATTTTGATGAATTTCCTTTTTGCTTTTCCTCCATTTT
TCCAATGTTTTTCAAATATTGGTGGAAAATGTATTCAGTAAGCAACTAGT
TTTCAATACCCAAATAATTAAATAATGAAGACGGAAGATTTGCTTTAAAT
AATTCATTATAAGTAAACGATGTCAAAACAGCAAATCTTGACAAATATTT
CAAAGATTTATTTTTTTTTTCTTTTCAATATCATTGCAAGCCATTTTAAA
ACATAACGGTCCAAGTCTCGTAGCATTTTGAAGATTATCTTTACGAAAAG
TCATCCCAATTTCTTCATTGTTCCAATTTACAGAATAGCAAGGATGTGAA
TTTTCAGGAGAAATAATTTGGTGAACAACTTCTGTAGTAGATAAATCAAT
TGCCATGTAAAATTCAGGGTGAAATACATCCCTTGTGGTACAGTAAAATG
GCATAACAAGGCGATCGAACTTCTTGATAGGGGCACGCACTCTCAAGTCC
CTATCTCTATATTCTACTGGTACTTTCACGCAGGGAATGAAGTTTTTTGT
TTCATTTATTGACAAAAGAACCCCATTCTCCAGTTTTAAAACTCTTAATT
CAAGGTCCTCCAATTCGCCATAACCATTATAAAGAAATATGTAATTTGAA
TGTTTAAGATCAACAACATTAAACATCCACGATTCAATGTATTCTAAATC
ATACGAATATAAAAAATTACCAGAATAATCACATTCAAGGATCTTTAAGT
TCATTATTTCTTCACTANATTCAATGTATTCCAGATTATACGAATATAAA
AAATTACCAGAATAATCACATTCGAGGATCTTTAGGTTCATTATATCTTC
ACTGTCTTCAATATAAGACCTTTTAAAGAAAAATATTTTGTCTTTAGTAT
ATTCCCTTCTCGCAATTACTGATCCACCAACCGTATCGAAATCTAAGACC
AATCTTTTCTCGTGACAAAGTTGATCTTTTTGTATCTTGATAAAATCCAG
ATAGTTGTATCTCTCATCCTGGTTACTCTCATAATACGGAGTAAAATAAC
TGCTTATAAGTAAAGTGGCATTCTCGTGGCCAAGAAATTTTGCATATTTA
CAAGTTATAGAGTTAAATAACTGATCATATGCCAAAGACAGATCTGGAGT
GGATGCTTCGTCGTCAATCTTTGAATCTTGATGATGCAAATCTCTATTTA
AATCAGCTTTAAGTGACTCTGATGAACCATGTTCCATGTTTAGATTTTGA
TTTTGTGATTCTGAGGGCAATTCAAAAAACGATGTAGGTCTACTAGATTC
ATCGTTTGAATCTTGATCGTACGAATCTTCAAAGATACTAGTCATAAAAG
ATAGATCTGGTGAATTTTGGGGTTCTGAAAAATCCTCAGGATTATAAAAT
GTCGGTTTTCTTGGTGGTGATTCTGGTTCAGTTGATTCAGGAATTTTTAC
ATCTTTACCATTAAGCTCGTCAAAAAGATCAACAATGTTGTAATTATAAA
GATCCATTACAGTTTCTNTCGTCAAAAAGATCAACAATGTTGTAAGTATA
AAGATCCATTACAGTTTCATGACGTTCGTTTGTTGGGTATGTTTGTATGA
TATGAACCAATACACCACTGGTTGAATTGAAAACATTTTCTCGGTGACAT
TCGAGTTCAGTTTCTGGTAATCTGATAATAATTCGACTGTGCAACCATTG
GAATTCTTCTATATCGAATTTGATCACGTGAACGATATTTTCTTCATTTT
CTTCTTGTAGGAACAAATAATATTTACCAGTGTGGAAGAGNAATCAATGG
AATATGAATATAAAAATTTACCCGAGTAATCATATTCTAAGATTGTTGAC
TTAATGGTATTGTGTTTGTTATCGATCCTTTCAAAATAGATCTTATGCTT
GGTAAAATATCGAAAAACAAAAGAATTTTCCAACGGTCTGTCTAATTCTA
TTACCAGTCTTTTTTCTTGCTTTATTTGATGTAGCTCGATGTTTAAAAAA
TCCAAACATAAACTTCGATATGATACGAGTGAAGGGTCGTTAGCTTCATC
AACTGTTCGTTGAGAAAATGCTGAAATGATAAGTTTTATATTGTTTCCAA
TGATATCNTTCAGTGTCACAGTCAAAATAATACATCGGTGAAAAAGCGAA
AAAAAATAGGCAAAATTTGTACGTAAGGTGGAAAAGTGAAAATTTACGTA
TTCACACTCAAAAAGATTTTTGAATTCGAAAAGTTATGACGAAGGTTTTA
TAAAAACCAACATAAGGATTCGCTATTACGTTTTTCTATCTGCGTGTCCT
AGCTGTCTGACTTTCGTCCCTCGGACCCTTAGCAAATTCGCTTCCATCAA
TTGATGNAACCATAAAGGTCGATAGTAAAATATTCCCTGTCGCTAGAATA
ACGTTCGATTGTATGAAGAAGAAAACCAACATCTGGATAAAAACAAAGCT
GCTCGTAATTATAATATCCAACGCAGGAACGAAGTTTAACGGTCACAATG
CGTTGAAGAAATTTAGAAAAACTTTTACAGAATTCGATAATATGAATACG
CACAGTATCGGATANTTTTTCAATAAATTATCCTTCTTGTAAACTTACAA
TTTTCATTTTTCAATTCCCAAATAGTCAAACAATATCGATGGCAAATCCG
CTTCCATTAATTGATGATAATTGAACGATGTCAAAACTTTCAATTTANGG
TCACAACGCGTTGAAGAAATTTAGAATAACTTTTATAGAATTCGATAATA
TGAATACGCACGGTATCGGTTTTTTTTGGATCTTCCTTAGCTAAAAAGTA
TTCACCAGTGTGGTAAAATCCCATCTCATCTTTATCAAATGGCTCAAATC
CGATGAATAGTGGTTGTATATCCTTGGCTTTGAAGTCAGGTGGAATGAAC
CATGATTTCTTGTCGTCAATCATCGCAATTTTTTTAATGTTTTTGATTTT
AATGTTTTTTTGTAACTGTAAAAGAATGACAAAATGTTATAATTCACAAG
AAAGTACATGCAATTTTATCACGAGCTAAAGAAAAATGGTGGAATTATAG
AAACTTGTAGTGATTTTAACCAGATATTTTAACCGATTTCCTCAACTTAA
TTGGCCTTACTTTATACTTTCAATGCAGAGATATCTAACAAGGGTACTCC
TACGCTTGTGTTCCTGATACCCGTCCGATGTTTGATAGGTGTTTGATAGT
AAACATTGCTCAAAGATCTAACAAAACTTCAAAAGAAACAAAATATTTTT
GGTACAATAGATAAAATATAAAACTTTTTTGGAAATGAAAAATTATTAGA
ATTTATATTGATCTATGTAATAGATATTGAAAAAATCTTCAATCTCTTTG
GTAAAAACTGATAAAGGCTTCACTGAATCTTAAATTGTCCCCTTATTTTA
AAAATTTCCATTAAAAAAAGCATTGTAACCATAAAATGTTTAACTACGCC
TCATTACTCTGGTCAATGACCAATTGAGTTCCATACCTATAAAGATATAA
CAGTATAATGGTAAAATATTCAATCTTACTAATTATTTCAAAGATTTCAT
TTTCCCTGTATAATGCTACAATTTTCACTTTTCAATTCCCAAATAGTCAA
ACAATGTCCTTTTTTTTTACAATAACTGCTAAGTTGAAAGCAATAAAGTT
AGACAATTATTATATCACGTCGAGATACAACATGTCACAAAAAGCCCCTG
GGGCTTGAAATAGGAAAATGATAGTTTATTGCTGAAACGTACTATAAACA
TCTAAGAACAACCCTGGGGGGGGGGATACTAGGGCAAAATGGGTTACGGG
GATGCGCCGCTGGTTAGGGTACCTTTTTTAACCTCCAAGAGTCCCAGGTA
GGGTTGCTAAAACACCAAAATAGAAAAATCAGTCCCTCTTTTGGGAAAAC
TTGGGGAAAAAGTAGAAAATTTTAAAACTTTGGAGAAATTTTGGAACTCC
AGTCCCATTCAGAGTCACTTTTTTCGCAAATTTCGGCAAAATTTTTTAAA
AAACGAGTCCCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCGCCCTG
TCAGTCGACAAGGGTAGTACCCCGTCCCCTGGGGAACAACCGAAACTTAC
GATTACTGATTTTTGTAAGAAAATCTGGTAATTTATTCATTGGGTTTGAT
AATATAAAAATTATAAATTTTGTAAAATATCTGTCTTAATATAGCGGGTA
TAAAATAGTTTGGTAGAGCGAAAATAAAAAAATGCAGTGTTTCCAGAATG
CGGGTGGAGGAACAAAACTCTCATGCGGCCGAACGGGAAAAATTTTGTTT
TGCTTTTTTTGATAACTATAAAGATCATTGAAATAGAACTTTAAAGATAA
CTTTTATTTATAAACAGTATGAAGTCTTGAACACCAATGCATCGACTACT
AACGAACAAAACTTGATTTACAAGCGAAAATATCTAACCAAACAGCGTTT
GATAGTTTGAACGGTCAGATTGATTTTCTTTACGATGAACCATATAGATG
AACCCATAGTCTGCGGCCGGGTCAGAATTTTTTTTTTTTCACCCGGCCGG
TTTCGTGAAACACTACATTTTTATATTTTTGCCTAGATATAAATTTTTTA
ACGGGAAGGATACAAAACTATCAATATTAATAATGTTCGCTTCATATTAG
GTGATTTTGATGAATTTCCTTATTGTTTTTCCTCCATTTTTCAAATGTTT
TTCAAATATTAGTGGAAAATGTATTTGTATTCAGTAAGCAACTAGTTTTC
AATCCCCAAATAATTAAATAAGGAAGATGGAAGATTTGCTTTAAATAATT
CATTATAAGTAAACGATGTTAAAACAGCAAATCTTGCCAAATATTTCAAA
GATTTCATTTCTTCTTTCCTTTCAATATTATTGCAAGCCATTTTAAAACA
TAACGGTCCAAGTCTCGTAGCATTTTGAAGATTATCTTTACGAAAAGTCA
TCCCAATTTCTTCATTGTTCCAATTTACAGAATAGCAAGGATGTGAATTT
TCAGGAGAAATAATTTGGTGAACAACTTCTATAGTAGATAAATCAATTGC
CATGTAAAATTCAGGGTGAAATACATCCTTTGTGGCACAGTAAAGTGGCA
TAACAAGGCGATCGAACTTCTTGATAGGGGCACGCACTCTGAAGTCCCTT
CCTCTATATTCTACTGGTACCTTCACAGAGAGAATGAAGTTTTTTGTTTC
ATTTATTGACAAACGAACCCCATTCTCCAGTTTTAAAGCTCTTAATTCAA
GGTCCTCTAATTCGCCATAGCCATTATAAAGAAATATGTAATTTGAATGT
TTAAGATCAACAACATTAAACAACATCCACGATTCAATGTATTCCAAATC
ATACGAATATAAGAAATTACCGGAATAATCACATTCAATGATCTTTAGGT
TTATCATATCTTCACTATCTTCAATATAAGACCTTTTAAAGAAAAATATT
TTGTCCTTAGTATATTCCCTTCTCGCAAATACTGATCCACCAGCGGTTTC
GAAATCTATAACCAATCTTCTCTCGTGACAAAGTTGATCTTTTTGTATCT
TGATAAAATCCAGATAGTTGTATTTCTCGTCCTGGTTACTCTCATAATAC
TTAGTAAAATAACTGCTTATAAGTAAAGTGGGATTCTCGTGGCCAAGAAA
TTCTGCATATTTACAAGTTATCGAGTTGAATAATTGATCATATGTCAAAG
ACAGATCTGGAGTGGATGCTTCGTCATCAATTTTTGAATCATGATGCTGC
AAATCTCTATTTAAATCAGCTTTAAGTGACTCTGGTGAACCATGTTCCCT
GTTTAGATTTTGACTTTGTGATTCTGAGGGCAATTCAAAAAACGATGTAG
GTCTACTAGATTCATCGTTCGAATCTTGATTGTACGAATCTTCAAAGATA
CTAGCCATAAAAGATAGATCTGGTGAATTTTGGGGTTCTGAAAAATCCTC
AGGATTATAAAATGTTGGTGTTCTTGGTGGTGATTCTGGTTCAGTTGATT
CAGGAATTTTTAAATCTTTGCCATTAAGCTCGTCAAAAAGATCAACAATG
TTGTAATTATAAAGATCCATTACAGTTTCATGACGTTCGTTTGTTGGGTA
TGTTTGTATGATATGAACCAATACACCACTGGTTGAATTGAAAACATTTT
CTCGGTGACCATCTAGTTCAGTTTTTGGTAAGCTGATAATTATTCGACTG
TGTACCCATTGGAATTCTTCTATATCGAATTTGATCACGTGAACGATATT
TTCTTCCTTTTCTTCTTGTAGGATCAAATAATATTTACCAGTGTGGAAGA
ACCCTTGCGCATGCTCGTTGGAGTAGCTTGAAGTGCTTGATACAGAAAAA
TTACCCAATAACAAAGGTGGAATATCTCTATTTTCGTATTCACGTGGAAT
GAACCATGATTTCTTAATGCTGTTATACATTGTTATCTGTTTCTTTTTAC
CTTAAAAATAGAGGAAAGTGATATTGAATTCAATGTTCAGTGTCACAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073086-exon-scaffold_86-1575043694:1401834..1402681 | TCONS_00073086-exon-scaffold_86-1575043694:1401834..1402681 | Clytia hemisphaerica | exon |
| TCONS_00073086-exon-scaffold_86-1575043694:1396082..1397183 | TCONS_00073086-exon-scaffold_86-1575043694:1396082..1397183 | Clytia hemisphaerica | exon |
| TCONS_00073086-exon-scaffold_86-1510915933:1401834..1402681 | TCONS_00073086-exon-scaffold_86-1510915933:1401834..1402681 | Clytia hemisphaerica | exon |
| TCONS_00073086-exon-scaffold_86-1510915933:1396082..1397183 | TCONS_00073086-exon-scaffold_86-1510915933:1396082..1397183 | Clytia hemisphaerica | exon |
| TCONS_00073086-exon-scaffold_86-1491911889:1401834..1402681 | TCONS_00073086-exon-scaffold_86-1491911889:1401834..1402681 | Clytia hemisphaerica | exon |
| TCONS_00073086-exon-scaffold_86-1491911889:1396082..1397183 | TCONS_00073086-exon-scaffold_86-1491911889:1396082..1397183 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1396082..1402681 - |
Blast
The following BLAST results are available for this feature:
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