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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073081 ID=TCONS_00073081|Name=TCONS_00073081|organism=Clytia hemisphaerica|type=transcript|length=2334bp tgcatttattcaggttgattttttatgacttctaatagtactttttctaa cgagtttgattactctgttctcacacttatgtctttttttttcgcgtcgt tttccgtgattacttttatttatatttttaaagacaggtaagaaggcata ttgatgtaactgtcctccaattgataaaaaaaattgtaccttCTTCAATG ACTTGTTGCCCTTCTTCCTCGACACTTTCATCCCCAGAAGCATCTGTCTC TTCCCCATTCACAGTTTCAGGAATATCCACACTATTTACAAACATTGGCA TGATGTAAGTGCTATTGATAGTCTGGCCAATCTGAATCTGATGATGTGGT GTGTCATCAGTCATGTGTGCATGGCTGGGtgcatttttactttttgttac aaatcgaaagtgaaacttCTAAACCCTTTTAAAAAACCGCTGACCCAAGA AATCGCGGGCACATCATAACAAACGACCCGTTTAAAACTACGGCCACCTC CCGTGATTATTGAACTTTGAGCCTTTACACATTCCATAAAAGGGAATTTG ATTGTTCTAGTGCTGAACGTTGATTGGATGAGGTGAGctgaaaagaatat tttttacgatgtaaacaaaccttgaaaaaaattttttcgaaaaaaacttc tACTCTCAAAAAAAGTCTGCAAAGACGAAGGGAGTGAAGAAtcaagtgaa attttcaagaatttttgtaGAACTTTAGAGGATTTTGTCCTTTACTAACC AGTATTTTAGCACACAACATTCGATTTATTGACAAAGGCTTGTTAGTGGT CCTCAATCTTCGCGAGGAGGCAAATTTGAAACTTCGTAAATCGATAAAAA GAGAATGTTTTCAGCGCTTACATCGTTGATATGGGGAACAGAACAAGAAG AGCCTGCAGCAACTAACActcaaattgaaaacaaaaacattgacgAACAC CTAGAAGTGGAAAACGAATGGATATACATTCAACCTAAAGaaaaatatgT GTCCCGAAAACACAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGA CAACTTCGGAAACTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTA ACTCCACCACAGTGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGT TGGCCCCATGGAAAATCTCCTTATTGAACACCCGAGCATGTCCATCTATC ATGGGAGCCCTGAAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCA TCTGTAGCTGTCAAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCT GTCCTTAGAAAAACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAA gccaaagaaaacaaaacaacagcAAAAACATGAAACGCAAAAATCAAGTT TACGTTAGACAACATGTCACACGTAAAAACAAGCAATACGGACGTATGAC CGGAAAACATACGGCTATGGTTGCTAAGCGAGGAGGTTTCTAAGTTCCGG ATTTCTGTTTCCTGCACTTAGTTGCTGCTGGAAATTGATTGTTAGATGAC AAATATGGTAAGGATGATGTACGGACGCACCCACAATAATGTTTCAAAAT GTTTCGAAAATGCAAAAAAGAACTCACACCTAAAAAACGTTGTTTTCTGT TGTTAATATGTGTACATTTCTAAATTATTCACtattgtttcttttttaaa aagcgCTATATaacattgtaaaaaaaatattaaaaacacaaaaacccctg aaatattttttgtaaagtAGATTTTAAGAGAGTTTTGTTACCCCCGGTTT TTTTGCAAAAGGTGTGATTATTGCAAAATAACCTCGCGGTAACTTATCGG AGTGTAGGACTTGTTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGT AAATCCCAAAGTTGTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAA ACtttaatatattttgaatattcgaaaaatatagaaaaagtcTTCATACC TTAAAAAAATATGggactttattttatttttcttttgttatattatATGA GGTActttggttttctttttatacacttttgaattttttcagctgtaaaa aaaaataaggCAAAACCACAGTATACTTATTATTTATGTATATTTATGTA ATTTAATTTCTTAGGtatgaatattttttcaaaattttagaaccaaaaaa attgtaaaatattacAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAA AAATTGTACaccaaaaaattgaactttttacaTGGAGAATTCTGTTAATA CGAAAGAgtaataaataatttttcaaattcaaaa Run BLAST on NCBI transcript from alignment at scaffold_86:1318897..1322118- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073081 ID=TCONS_00073081|Name=TCONS_00073081|organism=Clytia hemisphaerica|type=transcript|length=3222bp|location=Sequence derived from alignment at scaffold_86:1318897..1322118- (Clytia hemisphaerica) TGCATTTATTCAGGTTGATTTTTTATGACTTCTAATAGTACTTTTTCTAA
CGAGTTTGATTACTCTGTTCTCACACTTATGTCTTTTTTTTTCGCGTCGT
TTTCCGTGATTACTTTTATTTATATTTTTAAAGACAGGTAAGAAGGCATA
TTGATGTAACTGTCCTCCAATTGATAAAAAAAATTGTACCTTCTTCAATG
ACTTGTTGCCCTTCTTCCTCGACACTTTCATCCCCAGAAGCATCTGTCTC
TTCCCCATTCACAGTTTCAGGAATATCCACACTATTTACAAACATTGGCA
TGATGTAAGTGCTATTGATAGTCTGGCCAATCTGAATCTGATGATGTGGT
GTGTCATCAGTCATGTGTGCATGGCTGGGTGCATTTTTACTTTTTGTTAC
AAATCGAAAGTGAAACTTCTAAACCCTTTTAAAAAACCGCTGACCCAAGA
AATCGCGGGCACATCATAACAAACGACCCGTTTAAAACTACGGCCACCTC
CCGTGATTATTGAACTTTGAGCCTTTACACATTCCATAAAAGGGAATTTG
ATTGTTCTAGTGCTGAACGTTGATTGGATGAGGTGAGCTGAAAAGAATAT
TTTTTACGATGTAAACAAACCTTGAAAAAAATTTTTTCGAAAAAAACTTC
TACTCTCAAAAAAAGTCTGCAAAGACGAAGGGAGTGAAGAATCAAGTGAA
ATTTTCAAGAATTTTTGTAGAACTTTAGAGGATTTTGTCCTTTACTAACC
AGTATTTTAGCACACAACATTCGGTAAGTCATACAACATTAATTTCAATC
ATTTCTCTTTGAAAACGTTGTCGAAAATTGCATTAACAATCTCAGAAGTC
GAGGTGTCTTGTTTCAAAGAAAACAAAGCCGAAGAATTAAAATTTTCATT
CTAGTTTTCTAATTGTACAAGCTTTATCTCTACTTTGGTTAGGTGGACTT
TTTCATTGTATTGATGTATACTGTAGTCGAGGAGCTGATTTTCTCCGAAA
AAAAGACCTACAATATCCGATCCACCTGCTGATAACCATATTCGTTGCCA
AGATCTTTGTTTGGATGAACCAAGGCCCGTGTTTTATTTTTAGGCGGGTC
GGGAAAGGAAATTCGAATGTTTTTTTCAACATTTTAAAATTTTGAGGATA
CAAGGAAAAGAAAAAATTCTTGACTTTCTTCCTCGTTTTTATAGATTTAT
TGACAAAGGCTTGTTAGTGGTCCTCAATCTTCGCGAGGAGGCAAATTTGA
AACTTCGTAAATCGATAAAAAGAGAATGTTTTCAGCGCTTACATCGTTGA
TATGGGGAACAGAACAAGAAGAGCCTGCAGCAACTAACACTCAAATTGAA
AACAAAAACATTGACGAACACCTAGAAGTGGAAAACGAATGGATATACAT
TCAACCTAAAGGTACACTATTTTTCCTTTCTTTAACCTTTCGAGTTTAAT
CTACTGTATGATAGAGAAAAAAAGTCTCTTTTTAGCGCGTTGGTTGTCAA
AAGGCCTCAAAAACATATCATCTCTCTCTCTGTGCTGAATGAGAATATCA
TCTGTCAGAGGAAATCCTCTTTTTATAAGAATAAAAAATATAATCAGAGC
TTCGCTTTGCTTTCCCTTTGCGTTTTTATGCTTATGAATAAAATATTAAA
AACGATCGTGAGGTAAAAGGTAAAACAAGAGGAAAGAAAAAGAAAATTGT
CTTTCCTACACCCTGAACGTTTTTCAATATTGAATTTTCCATTTGTTACT
ATAAAATAATAATGAATTTTCTTTGTGTAAAGCAGTGTTCGAAGAGAGGA
GATATTCACACCTGTTTTCAATAGATATTATATAATTTTTGATATTTGAA
TGTTCGAACATTTGATTTTTTCTTATAGAAAAATATGTGTCCCGAAAACA
CAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGACAACTTCGGAAA
CTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTAACTCCACCACAG
TGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGTTGGCCCCATGGA
AAATCTCCTTATTGAACACCCGAGCATGTCCATCTATCATGGGAGCCCTG
AAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCATCTGTAGCTGTC
AAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCTGTCCTTAGAAAA
ACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAAGCCAAAGAAAAC
AAAACAACAGCAAAAACATGAAACGCAAAAATCAAGTTTACGTTAGACAA
CATGTCACACGTAAAAACAAGCAATACGGACGTATGACCGGAAAACATAC
GGCTATGGTTGCTAAGCGAGGAGGTTTCTAAGTTCCGGATTTCTGTTTCC
TGCACTTAGTTGCTGCTGGAAATTGATTGTTAGATGACAAATATGGTAAG
GATGATGTACGGACGCACCCACAATAATGTTTCAAAATGTTTCGAAAATG
CAAAAAAGAACTCACACCTAAAAAACGTTGTTTTCTGTTGTTAATATGTG
TACATTTCTAAATTATTCACTATTGTTTCTTTTTTAAAAAGCGCTATATA
ACATTGTAAAAAAAATATTAAAAACACAAAAACCCCTGAAATATTTTTTG
TAAAGTAGATTTTAAGAGAGTTTTGTTACCCCCGGTTTTTTTGCAAAAGG
TGTGATTATTGCAAAATAACCTCGCGGTAACTTATCGGAGTGTAGGACTT
GTTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGTAAATCCCAAAGT
TGTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAAACTTTAATATAT
TTTGAATATTCGAAAAATATAGAAAAAGTCTTCATACCTTAAAAAAATAT
GGGACTTTATTTTATTTTTCTTTTGTTATATTATATGAGGTACTTTGGTT
TTCTTTTTATACACTTTTGAATTTTTTCAGCTGTAAAAAAAAATAAGGCA
AAACCACAGTATACTTATTATTTATGTATATTTATGTAATTTAATTTCTT
AGGTATGAATATTTTTTCAAAATTTTAGAACCAAAAAAATTGTAAAATAT
TACAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAAAAATTGTACACC
AAAAAATTGAACTTTTTACATGGAGAATTCTGTTAATACGAAAGAGTAAT
AAATAATTTTTCAAATTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073081-exon-scaffold_86-1575043694:1321346..1322118 | TCONS_00073081-exon-scaffold_86-1575043694:1321346..1322118 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1575043694:1320708..1320924 | TCONS_00073081-exon-scaffold_86-1575043694:1320708..1320924 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1575043694:1318897..1320240 | TCONS_00073081-exon-scaffold_86-1575043694:1318897..1320240 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1510915933:1321346..1322118 | TCONS_00073081-exon-scaffold_86-1510915933:1321346..1322118 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1510915933:1320708..1320924 | TCONS_00073081-exon-scaffold_86-1510915933:1320708..1320924 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1510915933:1318897..1320240 | TCONS_00073081-exon-scaffold_86-1510915933:1318897..1320240 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1491911889:1321346..1322118 | TCONS_00073081-exon-scaffold_86-1491911889:1321346..1322118 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1491911889:1320708..1320924 | TCONS_00073081-exon-scaffold_86-1491911889:1320708..1320924 | Clytia hemisphaerica | exon |
TCONS_00073081-exon-scaffold_86-1491911889:1318897..1320240 | TCONS_00073081-exon-scaffold_86-1491911889:1318897..1320240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:1318897..1322118 - |
Blast
The following BLAST results are available for this feature:
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