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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072960 ID=TCONS_00072960|Name=TCONS_00072960|organism=Clytia hemisphaerica|type=transcript|length=1947bp CTTTATGTTAAATGaattctgtttaaagattttcttattttatttattgt gATTTTTAGGTTGTACCTACAGTATACCTTCTTTTCgattgatttatatt tctttttcatctttttcatgtaataaaaattgagcaaagcaaaaaaaaaa agatataaccTACCAATGAAATATACACATGGTGAAACGATGGAGTTGAT TTGATCATACATTTATTGGACATTGGTtgcttgaagaaaaaaacatggag AAATTCTTGCGAATCTTCTCAAAGACACCATCACTCATTGGTATGATTCA CGTCCGGGCCTTACCAGGTACACCTCTTTACAAATCTGGATCGTTTGACA ACATTGTTGACAAAGCAAAAGAGGAAGCTCAAGTACTTATTGAGGCTGGC ATTGATGGTTTAATGATTGAGAATATGCACGATATCCCATACATGAATCG ATCTGTTGGACCAGAAATCATATCATCCATGACAGTGATTAGTCATGAAG TAAAAAACATTGCCAAAACAATTCCTTGTGGTATACAAATATTGTCTGGT TGTAACCAAGCTGCTCTTGCTGTTGCTAAGGCTGCTTCTTTGCAATACAT CCGTGCTGAGGGATTTGTATTTGCGCATGTCGCTGATGAGGGAATTATCC AATCAGATGCCGGCTCGTTGTTACGGTACCGAAAATCTATTGATGCTGAT GACATCATGATTTGGACAGATATCAAGAAAAAACACAGCTCACACCAGAT AACATCAGACGTGTCGCTATCTGAAACGTGTCACGCTGCTGAATTCTTTC TATCGGACGGTCTTATCATCACTGGATCGTCTACCGGACAAGCTGCCTCG GTTACTGACCTTAAAGATGCCGTATCCACCGTGTCTATTCCGGCTATAAT TGGCTCCGGAATCAGCCCGGATAATGtggaaaatttctcaaaagcaCACG CTATGATCGTTGGTTcttatttcaagaaaaatgggCTATGGAGTAATGAA ATTTGTATGGATAGGTTGAACTCGTTGGTTCGTGCTGTTACACAGCTGCA AAATGAACCTCAAAGGTGAAAACCAGAGAGATAGGAAATGAAAGCTATCT AGGTAGCTatgaatttttaaacatttttttctataagatcaTAATATTGA TTGCATTTCGTAAATTTCATGAACAGCTCCGTGCGGTCGATTTTAAATGA ACCACGGCCAGCTATGGCGCGTTGAATTTCTTTGGAAAGCCGGAATCACA TGAAAGGTGTGTTCCTCCAATAAccattttttttagaaacaacAGATTCT ATGTATACAAAACGCTTATAATATAAAAACGAACGAAATAAATAATCAAT AACGGTGAATTTTCAATCGTCGATTATGTTCGTATCTAATAGGTGACTGC CATGGAAACCTCGCTAGATAAAATAAAAGATGACTTATTTTAAACGACAA TATTGCATCAGCCATAAAAATCATGAttcaagaaaacgaaagtggacAAT CAATTCGGACAGTTTAAATCAATAATACGGATAGAGGGGAAAAtcattgt tttttattgatGTTCGTCGCACCTATTGAATCTGATTAAGGAGGGGTGCT ATAAACAGCTCTACATCATAAATTATAGAATAAAACATGTTCATGTGATG CGATCTGTTTATTTGATGTCCTGACCCACCACgctatgaaaaatatattg gtCGAGCTATCGAATCTGTTTTTTATATATGCAATATTTAGTATTTGATA GTTTACTTATGACGAATTTTGTATATTTCCCTCAAATAGTAAATCCTAAA GGCAATTTATGACTATAACTTAAAAAATAGGTCATGGTTTACGAAAAACA AAGCCAGATACCAACCAAATAGCAATTTGAACATTAATCTCGTACCCTGA GCAACTTGTACCACTTTTCGATTTCACTGATGAACGTGATACAATCG Run BLAST on NCBI transcript from alignment at scaffold_86:1309382..1316632+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072960 ID=TCONS_00072960|Name=TCONS_00072960|organism=Clytia hemisphaerica|type=transcript|length=7251bp|location=Sequence derived from alignment at scaffold_86:1309382..1316632+ (Clytia hemisphaerica) CTTTATGTTAAATGaattctgtttaaagattttcttattttatttattgt
gATTTTTAGGTTGTACCTACAGTATACCTTCTTTTCgattgatttatatt
tctttttcatctttttcatgtaataaaaattgagcaaagcaaaaaaaaaa
agatataaccTACCAATGAAATATACACATGGTGAAACGATGGAGTTGAT
TTGATCATACATTTATTGGACATTGGTtgcttgaagaaaaaaacatggag
AAATTCTTGCGAATCTTCTCAAAGACACCATCACTCATTGGTATGATTCA
CGTCCGGGCCTTACCAGGTAGGTTATATCTTTTTTGGCGCATACGGTATA
AACGAACTTGCCTTCCTGCTAATTAGACGGGTCCCCCAAGAACCGGATTG
CACAATTATCCAAGTTTTTCATTTGTTCATGATTTTTGTGAATCTTTTGA
AGATTGCCTCCTTCTCAATTAGAAGGGGGTTGGGCCCTTCAAGAATCGGA
TTCAGTTGTTCATGTTTGTCCTtgtaaattatttgaaaattatttcatgG
TTACTTTCACTTTTCCTTTTAacagaatttgaaatttcaaatggtAAAAC
CGATTTAATTTAGAGTCATCATTGAGGTCTTAATTTCTTCCCACTATTCA
GGTACACCTCTTTACAAATCTGGATCGTTTGACAACATTGTTGACAAAGC
AAAAGAGGAAGCTCAAGTACTTATTGAGGCTGGCATTGTAAGTAGAATCA
TATTTTTATGTCATTGCTATTAACGGGATGCTCAAAGGTGCCCTCAAAAC
CAGAAAAATCTAGACCTCAGTTGAATTTAGTGAAAATCCAGGGACCTCTT
GAAACCAGACACAAATCCAAGGCGGGCCTCTTTAAATTTAAAGTCAGCAG
GGTTTTCATCATGGGTTACAAATCTTTCCTCGAATAACCCAACGAATAAC
CCACAAGGAAATTAGGTATTACATGTTTGTTTCTTTAGGATGGTTTAATG
ATTGAGAATATGCACGATATCCCATACATGAATCGATCTGTTGGACCAGA
AATCATATCATCCATGACAGTGATTAGTCATGAAGTAAAAAACATTGCCA
AAACAATTCCTTGTGGTATACAAATATTGTCTGGTTGTAACCAAGCTGCT
CTTGCTGTTGCTAAGGTgacattttttcttcatttgtcttgatgtttttt
tctgaacAAGAAAgtatttggattttttcttcgaTGGAAGACCCTAGAGT
TGCTCTGGCATTTTGTTATTCTTAGCAGTGTGATTTTTTTCGAATCAGTT
AGCCTTCACAAATCTTTACCCCATTCAAGCCCAAATAATTCATAATGCCG
GGAACTTATTCAACCATTACCAAACCATGGTATGCAGCATGAACTGGAAG
TCCCGTACTCAGGATGCACGATTTTTTCTCCATAGTATCCTTAAGGGAAC
AACTTTGGGATCCACAAAATTAAGGAAAAGGAAGGGGGAAGCTTTTGTTA
AGATCAGTAACACTTCCAAAAGGAAggaatcaaattttttaaagctaAGG
GGTTTCTTTCGTGTTTTCTTTTTGCGATTAGCTTggaatttgcttttttt
tcaatttgctattttttcaaacttattaCGTTattcttcaggtaggtcca
tttagcatgtagcttgtttgctttaaatttccaaaatGCTTTCTAAGGAA
CACAAAATTTCTATGGCTCTAATCATTTTTTGAAGTTACCTGCGTTTTTC
ACAGGCCGACACTTTTACAGCTCGAACGTTCTGTGTTTTGTTGGTATTTA
CATAAGAGGAGTGCATAAGGCATGTCTGTTTGGACAGTTTTTTCCCGAGC
AAAAAAATCTGCAAGCAGCAGTTTGCATTCAATTATGGACAGAATGCTTT
ATTAAGCTAATCTTTAAAAGCCTATCATTAGTGGGTTATATAATTGCTTT
CAATTAGTTTCTCTGTGTTCCTTGTTGATTTAACAGTCATGTGAGAAGGA
ACTTGTAATTAAACGTCAGGAAATGTGCAATTATCTTGCCAGATTTTGTA
ATTAGCTGTCATTTTAGATTGCCAGTGCCAATATACTGtattgtgaaatt
ttttaaagcGAATTGCAAAGCTTATATTTCTAAAGGCCTTTACTTCAATG
TTTTGTCCAAACAAACTCCCTTTGTATTTATATTCCTTTGAAGAATAAAA
CCATCTTTCAAAATCTACGTTGGgctatttccagaaaaaaacgtACACAG
GGGCTGGAGGGTATGTTGGTCAGGAGATCCAGTTGTATTTAAAAGATTGT
CAAAAACTCATTTTCCACGGGGTAAATTCACAATGCCCTGGGTTATAATT
AGTGTCCAGCAAAGATTTAttttatacactggataaacgactcataaaac
gatggagagcgctcattgtattttcattgtttcagaaaacaatggatgtt
ctagctttgtccgcaaaggacaactgtcatggctcgaagatgtctgattt
ttgaaaatgtttatcagtcttatttttaaaaggttctctagctctttctt
tttgtacatttacagaaaaaaaagtttgaaagtaaggctagcatttcGAG
CTGGAtgcatttgtgaaatctaatgtgaaaaaaacatcattagacaagaa
attcagacaaaatgcttataatgacacaaaattttcaattggaaatatct
ttccaagactgtccccagaacaGCTGAAATTAATATACaaaagacttgag
tgtcttgtctccactgtggtatgaaaatcctttggaggcacgtggtggca
aggtggtttttttttaggttaaagtttgaaaatttccggtgtcaacattc
aatttcttatacacaacacgtcttttgcatctttctcacagcttgaaacg
tcataacgaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagg
gaaggagagtgaacaataatatcattactgcggacatagctagtacacga
gaaatcggcaaaaatctgttacttgtatatccagtgtataataaatcctt
tcTGTCCAGAAAGTAGATTTGATGCTTGCCCGTAAAAGTCGTGTCAAGAG
GATGAAAAATCCAGATGTCTCGGTGTACTTGTACTTGAGCCCACTAAAAA
CTTTTATTGTAATCACAATAAAAAAGTGTAAGACCAATCTCTCTTTAAAG
TCTCGTAAAAAGCCTTGCTAAGAGTTATATTCGAAACTTTCTGAGCCTGC
TCGTCTTTGCCCTTTTGATTAATGTTGATCATGATTTTAATAGATTACTC
ATAAACAATCCATCAAAGctgttttctttataaattGATTGAGTATTCAA
AACTAAGGATGTTTAAATCAATAGACCAGAAGTACATTATAATTGGTTTT
TTATCTATGTTTTGCAAAAGTGCAACGTTCTTTTCCGCTCCTTTGCTATA
CTAAGCTTGACGTTATGCAATAGCCAGTATTTGATTCGCAGTGATTTACC
AAGCATAATAACGCCTTTAAGCCTTTAGATAGTCATAAACAGGCTTCATC
GATTTAAATGTTTTAATTAAACTTTGTtgtcagattttcaaaaaagattc
aaTAATTGATATTTAATTGATTACCGCCCTTACTGTGCATTATCCTATTG
TTTTTCTAATCCCCTATTAAAATGAAAGGGATAGATGAAATGTCATGATA
GATTCAATAGGGTAAACCTCTTTTAAATACTTCATGCTTCAAAAAGGTGC
AGTGTTTGTTTTAGGCCACTTTTAAGCAAAACTCAGTTATGCTTCATTGT
AAGAGACTTGCAAATTCTTTCTGCAAACACATTATCACACAGTATGAAAG
GGGGTGTTGTGTTCCTTTTTCCTGCAGATGTCTAAATAAGCAAGCTGTGA
ACAGTAGGTATACTTCATGTACTGTATTTCATCGTGAATATGGAACTACA
TGTCATCGTCTAATAGaggaaaattgtccaaattcCTTCTCtgttcaata
tattttttagtgATTGCTACATTATTTAACCTAAACTGAAGTTCATATAT
ATAAACTCGCCCAAATCGATTGAAATGAGCTCATTTGGCTCGCCATTCAC
AAAACTGATCTTTATCTACCTTGCCCTTGCCCTTGCCCTTGCCCTATCTA
TGCATGATCAAAGACTACAACTGGTCCGTTCTGTTAGCCTATTTCAACAC
TTTTGAGTTCACTCTATAGATTAGTTCGATACGCGATATTTCGTTGAAGT
TCAACTGTTTTTAACTTTCTGGTACTTCAATGTTGTTTTTCAATGCTGTT
ATTTTTACTATTTGTATACTCTGCCCTAATCTTCACTTATTCACGGAATC
TGGTAAATGAACGGTCTGAATTTCAGAATGGCCAAGGAGTAGCCAAAATG
TTTCGAATTTGTTTGATGTAGAAACTTCTTACAAGGAAAACTTACTAAAA
GATTGAAATTATTCAAAGATTTGCTTTTCCTCATTTATACAGGCTGCTTC
TTTGCAATACATCCGTGCTGAGGGATTTGTATTTGCGCATGTCGCTGATG
AGGGAATTATCCAATCAGATGCCGGCTCGTTGTTACGGTACCGAAAATCT
ATTGATGCTGATGACATCATGATTTGGACAGATATCAAGAAAAAACACAG
GTTGGTTAAAGAACAAAGaacataccttatcggccctttttacattggcc
cttattggcgttatttttgggctcttGGCGTAATAAAGGCCGGTGTAAAA
ACGGCCGATAAGGTAGCCTTTTTCAGTTGCAATTCGATTCAGTTTCTTGC
ACACTTTTTGTGTTTGACTTTAAGTTCAGGAATTGCATGACCACGTGATT
AATTTCGCCTGATGAAATAGCCAATCATAGTGGATACTGTTCAACCTTAC
AATGTGACCGACTCCTGTATCATTTAGTCATTTTGAAAGATTAAGGGAGA
CGAAGTATATGTCAAGTATTGTGCTACATTGACATATAAAAAACGAGTGA
TTAATATCATTTGATACAGTGTCCAAACTTTTCCTATCATATTCATACGA
AAGATTTCTGATTACACCCAATTTTTCCATCACACTAATATATTGGATTA
TATCCATCAAAAATCtgtgaaaattaataacaacacaaaaaaaaactagg
tcaagttttttctgatataatgttttgattttgatgtctGCAACTATAGA
AACGTCTTcttgaatttgatattttgttaaaattcaaaacataacTTTTA
CAGCATTCTTACTTTCCTTCCCAGCTTCACTTTTTATACTTTTAATCATA
AAAATGCTAAACTATACCAACAACGGTATCATAGTTTTGTTTCTGATCTT
GACATTCTTATCAACGTACCTTGCAATATTTTGCTAAGTCAGCATAAGAG
AATGATATAACCGAACTATATATATACTTCACTACATACATACAGTCATA
ATGtcgttttaagccaatcaaaataattgaaattttttgaaagtaagCTG
GTGTTTTCTGAGAGCAGAAAGCATTTCATTTTGTTCTTCCGTAGTCAACA
ATTAATTCCTATAGTGTACTTTAATACTGTAGTCTCTTTTGACTTCTATC
CTCTATACATGAGTTTGTTCCAATAATATTGGTCGTTCGTCAACACTGTA
ATTGTTATGACGCATTAACACAAGATTATAAACTGATACCTCACCTTCCA
ACTCAGTGATAGTTATCTCATgaattcttatattttttatagCTCACACC
AGATAACATCAGACGTGTCGCTATCTGAAACGTGTCACGCTGCTGAATTC
TTTCTATCGGACGGTCTTATCATCACTGGATCGTCTACCGGACAAGCTGC
CTCGGTTACTGACCTTAAAGATGCCGTATCCACCGTGTCTATTCCGGCTA
TAATTGGCTCCGGAATCAGCCCGGATAATGtggaaaatttctcaaaagca
CACGCTATGATCGTTGGTTcttatttcaagaaaaatgggCTATGGAGTAA
TGAAATTTGTATGGATAGGTTGAACTCGTTGGTTCGTGCTGTTACACAGC
TGCAAAATGAACCTCAAAGGTGAAAACCAGAGAGATAGGAAATGAAAGCT
ATCTAGGTAGCTatgaatttttaaacatttttttctataagatcaTAATA
TTGATTGCATTTCGTAAATTTCATGAACAGCTCCGTGCGGTCGATTTTAA
ATGAACCACGGCCAGCTATGGCGCGTTGAATTTCTTTGGAAAGCCGGAAT
CACATGAAAGGTGTGTTCCTCCAATAAccattttttttagaaacaacAGA
TTCTATGTATACAAAACGCTTATAATATAAAAACGAACGAAATAAATAAT
CAATAACGGTGAATTTTCAATCGTCGATTATGTTCGTATCTAATAGGTGA
CTGCCATGGAAACCTCGCTAGATAAAATAAAAGATGACTTATTTTAAACG
ACAATATTGCATCAGCCATAAAAATCATGAttcaagaaaacgaaagtgga
cAATCAATTCGGACAGTTTAAATCAATAATACGGATAGAGGGGAAAAtca
ttgttttttattgatGTTCGTCGCACCTATTGAATCTGATTAAGGAGGGG
TGCTATAAACAGCTCTACATCATAAATTATAGAATAAAACATGTTCATGT
GATGCGATCTGTTTATTTGATGTCCTGACCCACCACgctatgaaaaatat
attggtCGAGCTATCGAATCTGTTTTTTATATATGCAATATTTAGTATTT
GATAGTTTACTTATGACGAATTTTGTATATTTCCCTCAAATAGTAAATCC
TAAAGGCAATTTATGACTATAACTTAAAAAATAGGTCATGGTTTACGAAA
AACAAAGCCAGATACCAACCAAATAGCAATTTGAACATTAATCTCGTACC
CTGAGCAACTTGTACCACTTTTCGATTTCACTGATGAACGTGATACAATC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072960-exon-scaffold_86-1491911889:1309382..1309698 | TCONS_00072960-exon-scaffold_86-1491911889:1309382..1309698 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1510915933:1309382..1309698 | TCONS_00072960-exon-scaffold_86-1510915933:1309382..1309698 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1575043694:1309382..1309698 | TCONS_00072960-exon-scaffold_86-1575043694:1309382..1309698 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1491911889:1310033..1310118 | TCONS_00072960-exon-scaffold_86-1491911889:1310033..1310118 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1510915933:1310033..1310118 | TCONS_00072960-exon-scaffold_86-1510915933:1310033..1310118 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1575043694:1310033..1310118 | TCONS_00072960-exon-scaffold_86-1575043694:1310033..1310118 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1491911889:1310370..1310546 | TCONS_00072960-exon-scaffold_86-1491911889:1310370..1310546 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1510915933:1310370..1310546 | TCONS_00072960-exon-scaffold_86-1510915933:1310370..1310546 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1575043694:1310370..1310546 | TCONS_00072960-exon-scaffold_86-1575043694:1310370..1310546 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1491911889:1314174..1314331 | TCONS_00072960-exon-scaffold_86-1491911889:1314174..1314331 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1510915933:1314174..1314331 | TCONS_00072960-exon-scaffold_86-1510915933:1314174..1314331 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1575043694:1314174..1314331 | TCONS_00072960-exon-scaffold_86-1575043694:1314174..1314331 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1491911889:1315424..1316632 | TCONS_00072960-exon-scaffold_86-1491911889:1315424..1316632 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1510915933:1315424..1316632 | TCONS_00072960-exon-scaffold_86-1510915933:1315424..1316632 | Clytia hemisphaerica | exon |
TCONS_00072960-exon-scaffold_86-1575043694:1315424..1316632 | TCONS_00072960-exon-scaffold_86-1575043694:1315424..1316632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:1309382..1316632 + |
Blast
The following BLAST results are available for this feature:
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