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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073143 ID=TCONS_00073143|Name=TCONS_00073143|organism=Clytia hemisphaerica|type=transcript|length=3405bp
TGGTACAAATGAAGTATAATTTAAGAATGATTCAATGCAAGGTCTCCAAA
ATGGCTTAGAATATTCTCATATTATAAAGTATATATTTTAAACCAATTAG
TCATACAAGCATACAAAGTATTTGAGAGAAACCTTAAAACtgattattct
tataaagaaatcaTGTGTTTTCCTGAAACGAGTGTCAGCACTCTCCGTCT
TACAATGAAATGTTGTTTTTTGGTACCGTAACAATCGTTTTCTTCCTTTC
TTTCAGTATATGACAAGCTAAGGGAAGCCTCTCTTTAGTAcaacaaaaaa
acatcaaaagaaaaataaattgctGAACAAAGGAGAACGCTGACCACAAA
ATCTGTCGGATTAGAAACGACAGTCAAGAAAAGAAAAGGGTGCAAGTTGC
TACATACACTGGACTGGTAATTAGtcactgttttgtttttgtattgaaaa
gttggttCGTGACAGTATTGAATCGAGCAGAGGTAAAATACGCGAGTTAA
CAAGATCAAGAACACTTTAACGTTTATAACACATCATTGGACAGAAAATA
CGAAAAGTTGAAATAATAAAGTCGCAATAATCGAACTGCAGAACTAATAC
TGAATACAGACTACATTAATTTACGGAATAAATCTATCAAAGAAGAGATT
TATAATAAAGGCTTGAATAGTAGcgttaaatttaaatttacttcTACGTA
ACCATGAGTGTTCTAGTCGATTCAACCAATCAAGATGTATTGAATATACC
ACCACGCAAAAGTGTGTCAGCGCATCGCTTAAATTACCGGAAACAGAGCA
CTGATGGTGaagtcaaagtcaaaaaatcgaGTGTTATTCGCAGGAAAAAG
AATAATTTGGGAAACCAAAATTTCCGACATTCGGTCCACGATATATCGGG
AGCTTTAAATGAGCTTAATATCAAGGAAGAGGATGCAGGAGCCGATGGGG
TTGTCGGCGGATCCGCTAAACTGCACACTGAACGCGCCCGCTTGAGGCGT
ACGAAGAGTTTCCACGTATCCGAGGATCACGCGCATCAGAATATATCGCA
ACGTGACCGGAGTGAAATCTTAAAGCAGTACGTTGCCAATAAGTTTGAAC
TGGATATGGAAACTTTAGAAAACGATCTTAATAGCGATAAAGTACCGAAA
ATCGATTTTAAAGAAAGTTCGTTACCAATTCATGAAGCTATCATGAAGAA
ATATGAACAAGATTCTTTAAAAGAACTTTCCTTCTTATTATTGAAAAATG
ACTGTTTGAATATCGAACAGACCAATGCAGATGGTATGACACCGTTAGCT
TTCGCCGTCAGCTTGGAACTACACGATGTAGTACGTCTCTTGATCGCATT
TGGAGCCACGGTCAATTGTAAAGACAATTATGGTGAGGCTCCATTACGTT
ACGCAGTAGATAACGGCGATTTTGAAATGGCCAGTTTGTTGATTTCGAAT
GGCGCAAACGCGTCAGTTGTACAGAATggattttaacaattttttgacTG
TTCATTTGACGTAGAAAGCGTTTTGGTTAGAGATCGTTCTTTGGAGATTG
GTGAAGTGGAGGAATTGAGGATACCACTGAGCTGGaattctaaaactctc
ctttttTATAGCTATTAACACTTTGAAAGAGctttattaaaatcaaaact
cgGTTTGAGTTGATAGAGGGACAAGCTAAACTCTTTTTGGAACACTAAAA
ACTGCAAGGCTCAAATTTTAAACCTTCtttaaaaactattttcttcattt
tgaagaatttaagTATAATATGGACACAATTCTGTGATACcgttgaaaaa
aatcaagggtATTGTACAATATAAATGGTGGCATTTGGAAGACAAGgctt
tattttggaaaatagaTATTATCTTGAGGTGttatctttttatataaaat
tttaattgtaaCAATTCAATTTTACAGTATTAACTAAtataatttctttc
aaatcgaaACCCTTAATATTGGATGGGATTGAAAAAATGAGTATTTACAA
GCAATTATTGGTAAGTTTAGTGGATTTCCTTTACCAAACCAGGGATGGTA
GTCACTTGACAAATACAATCTCAcaccccttctcatagaccttctgggaa
cccttcccactggaacaATTAGCTAAAacatcgtccccagtggaaaatta
tactctcatttttgtcccgctgaaaataataaaataaacaaatcctcact
gcaaaatattatgccaTTTTTTTCCCCACTAAATTTTCTGGctaaaaaac
aatggaattcaaatccccagccataaaaaacacgggaatatcaatcccca
tcgagttttggtccatCATTTtaacccccactggctgataaaatcccacc
gggtctgtgagaaaggggtgtaatctCATCTCATTAATTTTTGTGCTATC
TATAAGACAAAATAAGGGAAACTGCTGGtacatttttaatatttttgctt
ttggATCAATTTATAATTTGGAAAGTTTGACAATTTGAAACCAGCTTATG
ACCAATATATATGAagaaatttatctttttcaaCTTGTAGATAATGTACA
TAGTAAtataaattttaatgaaaaatgctttttCTATAGATTAAAAAACC
CTAAAATTATTGATATTATTCAAACCTCTGCAACCCTACCCTATCTCGAT
TAACTAACAAAAATCTTCTAGAAAGACTTAAGTGTTGAGGGTACAAtctt
tttgtaaacttttttttcatcaaactcATTAAAACGACCAGTCTTATCac
ggaaagaaaaaacaaaaactaactTTCATTGTCATGGCGAAATCGGGTAA
GAGTTGACAAAATCGTCAACAAAAGGTACTATAAAAGAATTAGAAAAACA
CACTCTCTCTCGAGATGGAtattttccatccccactaaattttttggcta
gaaaacaatggaattcaaatccccagccataaaaaacacgggaatatcaa
tccccatcgagttttggtccatCATTTTAACCCCCACTGGTTGATAAAAT
CCCACCAGGTCTGTGAGGAGGGGGTGTAATCTCATCTCATTAATTTTTGT
GCTATCTATAAGACAAAATAAGGGAAACTGCTGGtacatttttaatattt
ttgcttttggATCAATTTATAATTTGGAAAGTTTGACAATTTGAAACCAG
CTTATGACCAATATATATGAagaaatttatctttttcaaCTTGTAGATAA
TGTACATAGTAatatagattttgatgaaaaatgcttTTTCTATAGATTCA
AAAACCCTAAAATTATTGATATTATTCAAACCTCTGCaacccggggggag
gggggacTGGGCTTGcagactgacggtatgtgcgggccaaaaatgggctt
ttaaaattgcacccttaagGTGCTGCAAAAGTcggtgaaaatcataccct
tagag Run BLAST on NCBI protein sequence of TCONS_00073143-protein >TCONS_00073143-protein ID=TCONS_00073143-protein|Name=TCONS_00073143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSVLVDSTNQDVLNIPPRKSVSAHRLNYRKQSTDGEVKVKKSSVIRRKKN
NLGNQNFRHSVHDISGALNELNIKEEDAGADGVVGGSAKLHTERARLRRT
KSFHVSEDHAHQNISQRDRSEILKQYVANKFELDMETLENDLNSDKVPKI
DFKESSLPIHEAIMKKYEQDSLKELSFLLLKNDCLNIEQTNADGMTPLAF
AVSLELHDVVRLLIAFGATVNCKDNYGEAPLRYAVDNGDFEMASLLISNG
ANASVVQNGF Run BLAST on NCBI transcript from alignment at scaffold_86:1114432..1117836 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073143 ID=TCONS_00073143|Name=TCONS_00073143|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at scaffold_86:1114432..1117836 (Clytia hemisphaerica)
ctctaagggtatgattttcaccgACTTTTGCAGCACcttaagggtgcaat
tttaaaagcccatttttggcccgcacataccgtcagtctgCAAGCCCAgt
cccccctccccccgggttGCAGAGGTTTGAATAATATCAATAATTTTAGG
GTTTTTGAATCTATAGAAAaagcatttttcatcaaaatctatatTACTAT
GTACATTATCTACAAGttgaaaaagataaatttctTCATATATATTGGTC
ATAAGCTGGTTTCAAATTGTCAAACTTTCCAAATTATAAATTGATccaaa
agcaaaaatattaaaaatgtaCCAGCAGTTTCCCTTATTTTGTCTTATAG
ATAGCACAAAAATTAATGAGATGAGATTACACCCCCTCCTCACAGACCTG
GTGGGATTTTATCAACCAGTGGGGGTTAAAATGatggaccaaaactcgat
ggggattgatattcccgtgttttttatggctggggatttgaattccattg
ttttctagccaaaaaatttagtggggatggaaaataTCCATCTCGAGAGA
GAGTGTGTTTTTCTAATTCTTTTATAGTACCTTTTGTTGACGATTTTGTC
AACTCTTACCCGATTTCGCCATGACAATGAAagttagtttttgttttttc
tttccgtGATAAGACTGGTCGTTTTAATgagtttgatgaaaaaaaagttt
acaaaaagaTTGTACCCTCAACACTTAAGTCTTTCTAGAAGATTTTTGTT
AGTTAATCGAGATAGGGTAGGGTTGCAGAGGTTTGAATAATATCAATAAT
TTTAGGGTTTTTTAATCTATAGaaaaagcatttttcattaaaatttataT
TACTATGTACATTATCTACAAGttgaaaaagataaatttctTCATATATA
TTGGTCATAAGCTGGTTTCAAATTGTCAAACTTTCCAAATTATAAATTGA
TccaaaagcaaaaatattaaaaatgtaCCAGCAGTTTCCCTTATTTTGTC
TTATAGATAGCACAAAAATTAATGAGATGagattacacccctttctcaca
gacccggtgggattttatcagccagtgggggttaAAATGatggaccaaaa
ctcgatggggattgatattcccgtgttttttatggctggggatttgaatt
ccattgttttttagCCAGAAAATTTAGTGGGGAAAAAAAtggcataatat
tttgcagtgaggatttgtttattttattattttcagcgggacaaaaatga
gagtataattttccactggggacgatgtTTTAGCTAATtgttccagtggg
aagggttcccagaaggtctatgagaaggggtgTGAGATTGTATTTGTCAA
GTGACTACCATCCCTGGTTTGGTAAAGGAAATCCACTAAACTTACCAATA
ATTGCTTGTAAATACTCATTTTTTCAATCCCATCCAATATTAAGGGTttc
gatttgaaagaaattataTTAGTTAATACTGTAAAATTGAATTGttacaa
ttaaaattttatataaaaagataaCACCTCAAGATAATAtctattttcca
aaataaagcCTTGTCTTCCAAATGCCACCATTTATATTGTACAATaccct
tgatttttttcaacgGTATCACAGAATTGTGTCCATATTATActtaaatt
cttcaaaatgaagaaaatagtttttaaaGAAGGTTTAAAATTTGAGCCTT
GCAGTTTTTAGTGTTCCAAAAAGAGTTTAGCTTGTCCCTCTATCAACTCA
AACcgagttttgattttaataaagCTCTTTCAAAGTGTTAATAGCTATAa
aaaaggagagttttagaattCCAGCTCAGTGGTATCCTCAATTCCTCCAC
TTCACCAATCTCCAAAGAACGATCTCTAACCAAAACGCTTTCTACGTCAA
ATGAACAgtcaaaaaattgttaaaatccATTCTGTACAACTGACGCGTTT
GCGCCATTCGAAATCAACAAACTGGCCATTTCAAAATCGCCGTTATCTAC
TGCGTAACGTAATGGAGCCTCACCATAATTGTCTTTACAATTGACCGTGG
CTCCAAATGCGATCAAGAGACGTACTACATCGTGTAGTTCCAAGCTGACG
GCGAAAGCTAACGGTGTCATACCATCTGCATTGGTCTGTTCGATATTCAA
ACAGTCATTTTTCAATAATAAGAAGGAAAGTTCTTTTAAAGAATCTTGTT
CATATTTCTTCATGATAGCTTCATGAATTGGTAACGAACTTTCTTTAAAA
TCGATTTTCGGTACTTTATCGCTATTAAGATCGTTTTCTAAAGTTTCCAT
ATCCAGTTCAAACTTATTGGCAACGTACTGCTTTAAGATTTCACTCCGGT
CACGTTGCGATATATTCTGATGCGCGTGATCCTCGGATACGTGGAAACTC
TTCGTACGCCTCAAGCGGGCGCGTTCAGTGTGCAGTTTAGCGGATCCGCC
GACAACCCCATCGGCTCCTGCATCCTCTTCCTTGATATTAAGCTCATTTA
AAGCTCCCGATATATCGTGGACCGAATGTCGGAAATTTTGGTTTCCCAAA
TTATTCTTTTTCCTGCGAATAACACtcgattttttgactttgacttCACC
ATCAGTGCTCTGTTTCCGGTAATTTAAGCGATGCGCTGACACACTTTTGC
GTGGTGGTATATTCAATACATCTTGATTGGTTGAATCGACTAGAACACTC
ATGGTTACGTAgaagtaaatttaaatttaacgCTACTATTCAAGCCTTTA
TTATAAATCTCTTCTTTGATAGATTTATTCCGTAAATTAATGTAGTCTGT
ATTCAGTATTAGTTCTGCAGTTCGATTATTGCGACTTTATTATTTCAACT
TTTCGTATTTTCTGTCCAATGATGTGTTATAAACGTTAAAGTGTTCTTGA
TCTTGTTAACTCGCGTATTTTACCTCTGCTCGATTCAATACTGTCACGaa
ccaacttttcaatacaaaaacaaaacagtgaCTAATTACCAGTCCAGTGT
ATGTAGCAACTTGCACCCTTTTCTTTTCTTGACTGTCGTTTCTAATCCGA
CAGATTTTGTGGTCAGCGTTCTCCTTTGTTCagcaatttatttttctttt
gatgtttttttgttgTACTAAAGAGAGGCTTCCCTTAGCTTGTCATATAC
TGAAAGAAAGGAAGAAAACGATTGTTACGGTACCAAAAAACAACATTTCA
TTGTAAGACGGAGAGTGCTGACACTCGTTTCAGGAAAACACAtgatttct
ttataagaataatcaGTTTTAAGGTTTCTCTCAAATACTTTGTATGCTTG
TATGACTAATTGGTTTAAAATATATACTTTATAATATGAGAATATTCTAA
GCCATTTTGGAGACCTTGCATTGAATCATTCTTAAATTATACTTCATTTG
TACCA Coding sequence (CDS) from alignment at scaffold_86:1114432..1117836 >TCONS_00073143 ID=TCONS_00073143|Name=TCONS_00073143|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_86:1114432..1117836 (Clytia hemisphaerica)
ttaaaatccATTCTGTACAACTGACGCGTTTGCGCCATTCGAAATCAACA
AACTGGCCATTTCAAAATCGCCGTTATCTACTGCGTAACGTAATGGAGCC
TCACCATAATTGTCTTTACAATTGACCGTGGCTCCAAATGCGATCAAGAG
ACGTACTACATCGTGTAGTTCCAAGCTGACGGCGAAAGCTAACGGTGTCA
TACCATCTGCATTGGTCTGTTCGATATTCAAACAGTCATTTTTCAATAAT
AAGAAGGAAAGTTCTTTTAAAGAATCTTGTTCATATTTCTTCATGATAGC
TTCATGAATTGGTAACGAACTTTCTTTAAAATCGATTTTCGGTACTTTAT
CGCTATTAAGATCGTTTTCTAAAGTTTCCATATCCAGTTCAAACTTATTG
GCAACGTACTGCTTTAAGATTTCACTCCGGTCACGTTGCGATATATTCTG
ATGCGCGTGATCCTCGGATACGTGGAAACTCTTCGTACGCCTCAAGCGGG
CGCGTTCAGTGTGCAGTTTAGCGGATCCGCCGACAACCCCATCGGCTCCT
GCATCCTCTTCCTTGATATTAAGCTCATTTAAAGCTCCCGATATATCGTG
GACCGAATGTCGGAAATTTTGGTTTCCCAAATTATTCTTTTTCCTGCGAA
TAACACtcgattttttgactttgacttCACCATCAGTGCTCTGTTTCCGG
TAATTTAAGCGATGCGCTGACACACTTTTGCGTGGTGGTATATTCAATAC
ATCTTGATTGGTTGAATCGACTAGAACACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00073143-exon-scaffold_86-1491911889:1114432..1117836 | TCONS_00073143-exon-scaffold_86-1491911889:1114432..1117836 | Clytia hemisphaerica | exon |
| TCONS_00073143-exon-scaffold_86-1510915933:1114432..1117836 | TCONS_00073143-exon-scaffold_86-1510915933:1114432..1117836 | Clytia hemisphaerica | exon |
| TCONS_00073143-exon-scaffold_86-1575043694:1114432..1117836 | TCONS_00073143-exon-scaffold_86-1575043694:1114432..1117836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1114432..1117836 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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