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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073046 ID=TCONS_00073046|Name=TCONS_00073046|organism=Clytia hemisphaerica|type=transcript|length=1775bp GAAAGATAgtagatatttttgaaaacttaaagaaaaatattttcgaaaat gaaTTCGGAAATGGAGCTCGATAAAAAAGACGAATCATTCCCGTCTCCAG GGGAACGAGTATTCCAAAGTTGGGAACTAGTCatgaatattttcagttat ttGCCATGGAGTGAAGTATGTAGATTACGTAACCTAAGTGCAGAAACTCG TTATGCTTGTCAGTACAGTGTTCATGAAATAACTGATCCAGAAGATCATA ACATCGAAGAGAACGATTTTTACGATTTCCTTCTTGCCCTTGGCTCAATA GGATGTCACAAACTCAATAAAATCGATGTTTTATCCTCACCAAACCTCAG CAATAACATTCTACCCATTCTTAAGTTTTGTGGCAACATCGAACACTTAG CGTTGACAAAAAATCACGGAGGACAAGATATTTACATGAGCATGATCTAT AACACTGATGTTCGTCATTTGGCAATTCAAGCAACCGAAGTGCATTATTT TCAAGATGTCGACTTGATTGATATCTTGCTGATTTTACAGAATATCACTG AACTCGAAATCACCAACGCTGGTATCACAGACATCGCTTTAGCTGAAATC AGTGACGAAATCACCAATCTAACTCATCTCAATATAAGCGGTTGTATTGA TGTCACGGATGTCGGGTTACGCGAAATCCTTGATAAATGTAAAGAATTAA AACACTTGAACGTTCAAAATACACCAACAATGAGAGAAGACTGCGTCCAA GCATTCATTTTCAACTATACTTTAGAGTATTTCAATGCATTAGAGACAAA CCTACTTCCTGATGATGCTCAAAGACTTAAGCGCCATTTCGATGCTTTTC ATAGACCATATGAGTTTCTATGGAGTCGTACAAAGGTTGTTAATCAGACT TACGAGTTAGAGACTGTCCGCGAGGTCAATCGGAGGCCATTATTCACTGA TTTCCCACCATGGAccaatgaagaaattttcaattctaTGCATATTGATG AACATCTGTGGAATAATGCTGAAACGATTACAAGACGACCGGTTGAATTT ACAGCTCAACAATACTTGATTAATTTAAGGAACGCCTGTAATCAACCAGT ATTCAATCCTTCAACAATGGTCATTCATGATTGGTCAGAACAAGCTTTTA AAGGTGGCCCGAAAGACTGGTGGAGTTCTGATCAAAAGATCGACAGCCTA gcacgaaaattaaaaattaaacgaAGCGATCCTAAACTAAAAGAAACTGA cgaatacaaaaaaattattgaagatgAAAACTTCAGAGTAGACAAAGTCG CATTCCCAGAAGAAAATAACTCTAAATTTGGCATAGATGGAATTTTAGGA AATCCAGATGATACAGATTTAGGCTGGAAACGCATTTATGAAGTACAGGA CAATTTGAAATCGTTGAAAAAGGAATATGAGGTCTTGATGGAAGAATTTC AAACTTTCGAACAAAAATAATTAGCCCGGGAAATAAttattgaaattcaa tagaaaacattttagttaaaaattgtatatataccttaaattttaaatta tatttatatagctttaaataaattttacttatttctacaaaaaagaacct ttttaagaatattttaaaatagtttttgagGTACGCTCAATATCTCCATT AGACGAAGAATGAACCAGAAAGCCCTGCTTTAACTAGCTCATTCGTCTAC TcatacactcattttgttttataagcatacggttaATTTTagctgaagct cactatgcttaagtaaagctcaatt Run BLAST on NCBI protein sequence of TCONS_00073046-protein >TCONS_00073046-protein ID=TCONS_00073046-protein|Name=TCONS_00073046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MNSEMELDKKDESFPSPGERVFQSWELVMNIFSYLPWSEVCRLRNLSAET RYACQYSVHEITDPEDHNIEENDFYDFLLALGSIGCHKLNKIDVLSSPNL SNNILPILKFCGNIEHLALTKNHGGQDIYMSMIYNTDVRHLAIQATEVHY FQDVDLIDILLILQNITELEITNAGITDIALAEISDEITNLTHLNISGCI DVTDVGLREILDKCKELKHLNVQNTPTMREDCVQAFIFNYTLEYFNALET NLLPDDAQRLKRHFDAFHRPYEFLWSRTKVVNQTYELETVREVNRRPLFT DFPPWTNEEIFNSMHIDEHLWNNAETITRRPVEFTAQQYLINLRNACNQP VFNPSTMVIHDWSEQAFKGGPKDWWSSDQKIDSLARKLKIKRSDPKLKET DEYKKIIEDENFRVDKVAFPEENNSKFGIDGILGNPDDTDLGWKRIYEVQ DNLKSLKKEYEVLMEEFQTFEQK Run BLAST on NCBI transcript from alignment at scaffold_86:932896..936533- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073046 ID=TCONS_00073046|Name=TCONS_00073046|organism=Clytia hemisphaerica|type=transcript|length=3638bp|location=Sequence derived from alignment at scaffold_86:932896..936533- (Clytia hemisphaerica) GAAAGATAGTAGATATTTTTGAAAACTTAAAGAAAAATATTTTCGAAAAT
GAATTCGGAAATGGAGCTCGATAAAAAAGACGAATCATTCCCGTCTCCAG
GGGAACGAGTATTCCAAAGTTGGGAACTAGTCATGAATATTTTCAGTTAT
TTGCCATGGAGTGAAGTATGTAGATTACGTAACCTAAGTGCAGAAACTCG
TTATGCTTGTCAGTACAGTGTTCATGAAATAACTGATCCAGAAGATCATA
ACATCGAAGGTATACTCTTTTACTATATTATTGTTTACAATAGTACTACG
GGTATCAGTTACTTTAATTGTAGAAATTTTAGCGAGACTAATTTTAGCGT
TTTAGCGAGTTTTCCCTATTTTCGCTAAAATAAATCTCGCTAAAACACGC
CGAATCGACAGATCGCTAAAATTTATCCGCGCAAAATTTCTGTTAATATT
GGCTTGATACATTTTTATCAATAGGAAGGGTTTCAGTGCAAAGAAATGCT
AGAAAACGAGTTCAGTCAATTAATGTAATACGAGTGTTCGCTAAAATTTA
TCCACGCGAAATTTTTTGAAATCGTGATACGCTAAAATAAATCCAAAAAA
AATCAAGATTTTCCTGACTCACTAATATACGCTAAAATTAGTCTCGCTAA
AATTTGTACGATTAATAATGAAAAGGTAGTATGGGTCTCGATGAGAAGTA
ATACGGATAGTAATTAACGGCTAAAAAGTCCCACTTTCCTTCCGTCTTCC
TTGAGAGGAGATTCGAATAAGTAGTAGCCGGTCACCGAGAGCACTACTTA
TCTGGATTCAGTCATTCTTGATACGAGATCGTCTTTAAGAACCGTTTCTT
TTATAAATTGATACTTTTTATCCTTTTCATGTTTTTTATGAAAAATCTCT
TGATCATTGTTATACAATCTGACCCAATGAAGTTAGATCCAAAAAAATGA
TAAACTATCTTCACTAAAATAGTAACCTTTCACCATTGCAACTTTGTTCA
TTATTTCAGAGAACGATTTTTACGATTTCCTTCTTGCCCTTGGCTCAATA
GGATGTCACAAACTCAATAAAATCGATGTTTTATCCTCACCAAACCTCAG
CAATAACATTCTACCCATTCTTAAGTTTTGTGGCAACATCGAACACTTAG
CGTTGACAAAAAATCACGGAGGACAAGATATTTACATGAGCATGATCTAT
AACACTGATGTTCGTCATTTGGCAATTCAAGCAACCGAAGTGCATTATTT
TCAAGATGTCGACTTGATTGATATCTTGCTGATTTTACAGGTACAGTAGG
TTCTAGCCTCTTATTTGATAGTCAATTACCAGTATGCAAATTTTATTGCT
GTTAAAAGTTGAGATTTCATGAAATCTTTACACCCTAAAGGAAAATCATT
GTCTTTCATTACATGATCGGCCGCGAAAAGTTGATGCTCGTCAAAAGAAT
TTCTTCCTCAGAAGTTTATGTCGCAATTATCGTGATTTTCCAACCTCATG
AAAGTTTTTGTTTGTTAAAGCTTGAACAGTCACCGCCGAAATATATTGAC
AATTTTTGGTATTTTAACGTTTTACAGAATTTAAAGCTTGGGAGAGAATT
GCGATTTAGTACTTCCACATTGTTTCATTGGATTTTTCGATTTTGGAGAG
GTTAAGTGGCTTCCAGGCTTTATTACTCTCAGGAACAGTGGAACATTGAA
ACATTTTCGAGCTATTAGTTCCTGAAGTGTTAAGTCGTATGTTTAAACTC
TACTTTTCAAGCGTACTTTACTTTTTTTATTTTTTATTTTATTTTATTTA
TTTGATAAAGCAGGTTAAAAAACGCAGACTAAGCTGATGTGGACCTGCAA
CTAAGGACTATATTACAAATGAAAAATAGTTAAAATGTATTAAAATTATG
TATATGCTGTAAATAGAGATAAAAGAATTATTAGTGCAGAGATTTCTGAA
GGATAGTTAAACAGAGAAAAAAAGTAAAAACTTGATAAGCTTATGTGGCT
TAAGTGAGATTTAGTTTTGTTATAGGAGTTAATTAGAACTAGACTTCAGC
TAACCTAATGTAACCTATGAGTCATAAAAACCTACGCATGTGCAATATAA
AATTAAAAGCTATGTATCTAAAAAATAAATAAAATTTTAAAATCTAGGTC
ATCAAAGTGAGATAGGGAAATTAAGCAAACGAGTGTTTTGTTTACCAAGA
ATATAGCACTACAAGCACTCAAAAATCACTTGCAGTTTTAAAATTTTGAG
GGGATTCTCCTTTTGTGCAAATATTTTCTCGATGATTGTTATATTTGAAA
TAAACCACTGTCGTGCTAACTCGCATTTATGAGATGAAAGCTTTTAAACC
AACTGCATATCTCTCATAAAACAACACCAATCTTCTTACATTTGTCTATA
TAGAATATCACTGAACTCGAAATCACCAACGCTGGTATCACAGACATCGC
TTTAGCTGAAATCAGTGACGAAATCACCAATCTAACTCATCTCAATATAA
GCGGTTGTATTGATGTCACGGATGTCGGGTTACGCGAAATCCTTGATAAA
TGTAAAGAATTAAAACACTTGAACGTTCAAAATACACCAACAATGAGAGA
AGACTGCGTCCAAGCATTCATTTTCAACTATACTTTAGAGTATTTCAATG
CATTAGAGACAAACCTACTTCCTGATGATGCTCAAAGACTTAAGCGCCAT
TTCGATGCTTTTCATAGACCATATGAGTTTCTATGGAGTCGTACAAAGGT
TGTTAATCAGACTTACGAGTTAGAGACTGTCCGCGAGGTCAATCGGAGGC
CATTATTCACTGATTTCCCACCATGGACCAATGAAGAAATTTTCAATTCT
ATGCATATTGATGAACATCTGTGGAATAATGCTGAAACGATTACAAGACG
ACCGGTTGAATTTACAGCTCAACAATACTTGATTAATTTAAGGAACGCCT
GTAATCAACCAGTATTCAATCCTTCAACAATGGTCATTCATGATTGGTCA
GAACAAGCTTTTAAAGGTGGCCCGAAAGACTGGTGGAGTTCTGATCAAAA
GATCGACAGCCTAGCACGAAAATTAAAAATTAAACGAAGCGATCCTAAAC
TAAAAGAAACTGACGAATACAAAAAAATTATTGAAGATGAAAACTTCAGA
GTAGACAAAGTCGCATTCCCAGAAGAAAATAACTCTAAATTTGGCATAGA
TGGAATTTTAGGAAATCCAGATGATACAGATTTAGGCTGGAAACGCATTT
ATGAAGTACAGGACAATTTGAAATCGTTGAAAAAGGAATATGAGGTCTTG
ATGGAAGAATTTCAAACTTTCGAACAAAAATAATTAGCCCGGGAAATAAT
TATTGAAATTCAATAGAAAACATTTTAGTTAAAAATTGTATATATACCTT
AAATTTTAAATTATATTTATATAGCTTTAAATAAATTTTACTTATTTCTA
CAAAAAAGAACCTTTTTAAGAATATTTTAAAATAGTTTTTGAGGTACGCT
CAATATCTCCATTAGACGAAGAATGAACCAGAAAGCCCTGCTTTAACTAG
CTCATTCGTCTACTCATACACTCATTTTGTTTTATAAGCATACGGTTAAT
TTTAGCTGAAGCTCACTATGCTTAAGTAAAGCTCAATT Coding sequence (CDS) from alignment at scaffold_86:932896..936533- >TCONS_00073046 ID=TCONS_00073046|Name=TCONS_00073046|organism=Clytia hemisphaerica|type=CDS|length=4266bp|location=Sequence derived from alignment at scaffold_86:932896..936533- (Clytia hemisphaerica) AATATCACTGAACTCGAAATCACCAACGCTGGTATCACAGACATCGCTTT AGCTGAAATCAGTGACGAAATCACCAATCTAACTCATCTCAATATAAGCG GTTGTATTGATGTCACGGATGTCGGGTTACGCGAAATCCTTGATAAATGT AAAGAATTAAAACACTTGAACGTTCAAAATACACCAACAATGAGAGAAGA CTGCGTCCAAGCATTCATTTTCAACTATACTTTAGAGTATTTCAATGCAT TAGAGACAAACCTACTTCCTGATGATGCTCAAAGACTTAAGCGCCATTTC GATGCTTTTCATAGACCATATGAGTTTCTATGGAGTCGTACAAAGGTTGT TAATCAGACTTACGAGTTAGAGACTGTCCGCGAGGTCAATCGGAGGCCAT TATTCACTGATTTCCCACCATGGACCAATGAAGAAATTTTCAATTCTATG CATATTGATGAACATCTGTGGAATAATGCTGAAACGATTACAAGACGACC GGTTGAATTTACAGCTCAACAATACTTGATTAATTTAAGGAACGCCTGTA ATCAACCAGTATTCAATCCTTCAACAATGGTCATTCATGATTGGTCAGAA CAAGCTTTTAAAGGTGGCCCGAAAGACTGGTGGAGTTCTGATCAAAAGAT CGACAGCCTAGCACGAAAATTAAAAATTAAACGAAGCGATCCTAAACTAA AAGAAACTGACGAATACAAAAAAATTATTGAAGATGAAAACTTCAGAGTA GACAAAGTCGCATTCCCAGAAGAAAATAACTCTAAATTTGGCATAGATGG AATTTTAGGAAATCCAGATGATACAGATTTAGGCTGGAAACGCATTTATG AAGTACAGGACAATTTGAAATCGTTGAAAAAGGAATATGAGGTCTTGATG GAAGAATTTCAAACTTTCGAACAAAAATAAAGAACGATTTTTACGATTTC CTTCTTGCCCTTGGCTCAATAGGATGTCACAAACTCAATAAAATCGATGT TTTATCCTCACCAAACCTCAGCAATAACATTCTACCCATTCTTAAGTTTT GTGGCAACATCGAACACTTAGCGTTGACAAAAAATCACGGAGGACAAGAT ATTTACATGAGCATGATCTATAACACTGATGTTCGTCATTTGGCAATTCA AGCAACCGAAGTGCATTATTTTCAAGATGTCGACTTGATTGATATCTTGC TGATTTTACAGATGAATTCGGAAATGGAGCTCGATAAAAAAGACGAATCA TTCCCGTCTCCAGGGGAACGAGTATTCCAAAGTTGGGAACTAGTCATGAA TATTTTCAGTTATTTGCCATGGAGTGAAGTATGTAGATTACGTAACCTAA GTGCAGAAACTCGTTATGCTTGTCAGTACAGTGTTCATGAAATAACTGAT CCAGAAGATCATAACATCGAAGAATATCACTGAACTCGAAATCACCAACG CTGGTATCACAGACATCGCTTTAGCTGAAATCAGTGACGAAATCACCAAT CTAACTCATCTCAATATAAGCGGTTGTATTGATGTCACGGATGTCGGGTT ACGCGAAATCCTTGATAAATGTAAAGAATTAAAACACTTGAACGTTCAAA ATACACCAACAATGAGAGAAGACTGCGTCCAAGCATTCATTTTCAACTAT ACTTTAGAGTATTTCAATGCATTAGAGACAAACCTACTTCCTGATGATGC TCAAAGACTTAAGCGCCATTTCGATGCTTTTCATAGACCATATGAGTTTC TATGGAGTCGTACAAAGGTTGTTAATCAGACTTACGAGTTAGAGACTGTC CGCGAGGTCAATCGGAGGCCATTATTCACTGATTTCCCACCATGGACCAA TGAAGAAATTTTCAATTCTATGCATATTGATGAACATCTGTGGAATAATG CTGAAACGATTACAAGACGACCGGTTGAATTTACAGCTCAACAATACTTG ATTAATTTAAGGAACGCCTGTAATCAACCAGTATTCAATCCTTCAACAAT GGTCATTCATGATTGGTCAGAACAAGCTTTTAAAGGTGGCCCGAAAGACT GGTGGAGTTCTGATCAAAAGATCGACAGCCTAGCACGAAAATTAAAAATT AAACGAAGCGATCCTAAACTAAAAGAAACTGACGAATACAAAAAAATTAT TGAAGATGAAAACTTCAGAGTAGACAAAGTCGCATTCCCAGAAGAAAATA ACTCTAAATTTGGCATAGATGGAATTTTAGGAAATCCAGATGATACAGAT TTAGGCTGGAAACGCATTTATGAAGTACAGGACAATTTGAAATCGTTGAA AAAGGAATATGAGGTCTTGATGGAAGAATTTCAAACTTTCGAACAAAAAT AAAGAACGATTTTTACGATTTCCTTCTTGCCCTTGGCTCAATAGGATGTC ACAAACTCAATAAAATCGATGTTTTATCCTCACCAAACCTCAGCAATAAC ATTCTACCCATTCTTAAGTTTTGTGGCAACATCGAACACTTAGCGTTGAC AAAAAATCACGGAGGACAAGATATTTACATGAGCATGATCTATAACACTG ATGTTCGTCATTTGGCAATTCAAGCAACCGAAGTGCATTATTTTCAAGAT GTCGACTTGATTGATATCTTGCTGATTTTACAGATGAATTCGGAAATGGA GCTCGATAAAAAAGACGAATCATTCCCGTCTCCAGGGGAACGAGTATTCC AAAGTTGGGAACTAGTCATGAATATTTTCAGTTATTTGCCATGGAGTGAA GTATGTAGATTACGTAACCTAAGTGCAGAAACTCGTTATGCTTGTCAGTA CAGTGTTCATGAAATAACTGATCCAGAAGATCATAACATCGAAGAATATC ACTGAACTCGAAATCACCAACGCTGGTATCACAGACATCGCTTTAGCTGA AATCAGTGACGAAATCACCAATCTAACTCATCTCAATATAAGCGGTTGTA TTGATGTCACGGATGTCGGGTTACGCGAAATCCTTGATAAATGTAAAGAA TTAAAACACTTGAACGTTCAAAATACACCAACAATGAGAGAAGACTGCGT CCAAGCATTCATTTTCAACTATACTTTAGAGTATTTCAATGCATTAGAGA CAAACCTACTTCCTGATGATGCTCAAAGACTTAAGCGCCATTTCGATGCT TTTCATAGACCATATGAGTTTCTATGGAGTCGTACAAAGGTTGTTAATCA GACTTACGAGTTAGAGACTGTCCGCGAGGTCAATCGGAGGCCATTATTCA CTGATTTCCCACCATGGACCAATGAAGAAATTTTCAATTCTATGCATATT GATGAACATCTGTGGAATAATGCTGAAACGATTACAAGACGACCGGTTGA ATTTACAGCTCAACAATACTTGATTAATTTAAGGAACGCCTGTAATCAAC CAGTATTCAATCCTTCAACAATGGTCATTCATGATTGGTCAGAACAAGCT TTTAAAGGTGGCCCGAAAGACTGGTGGAGTTCTGATCAAAAGATCGACAG CCTAGCACGAAAATTAAAAATTAAACGAAGCGATCCTAAACTAAAAGAAA CTGACGAATACAAAAAAATTATTGAAGATGAAAACTTCAGAGTAGACAAA GTCGCATTCCCAGAAGAAAATAACTCTAAATTTGGCATAGATGGAATTTT AGGAAATCCAGATGATACAGATTTAGGCTGGAAACGCATTTATGAAGTAC AGGACAATTTGAAATCGTTGAAAAAGGAATATGAGGTCTTGATGGAAGAA TTTCAAACTTTCGAACAAAAATAAAGAACGATTTTTACGATTTCCTTCTT GCCCTTGGCTCAATAGGATGTCACAAACTCAATAAAATCGATGTTTTATC CTCACCAAACCTCAGCAATAACATTCTACCCATTCTTAAGTTTTGTGGCA ACATCGAACACTTAGCGTTGACAAAAAATCACGGAGGACAAGATATTTAC ATGAGCATGATCTATAACACTGATGTTCGTCATTTGGCAATTCAAGCAAC CGAAGTGCATTATTTTCAAGATGTCGACTTGATTGATATCTTGCTGATTT TACAGATGAATTCGGAAATGGAGCTCGATAAAAAAGACGAATCATTCCCG TCTCCAGGGGAACGAGTATTCCAAAGTTGGGAACTAGTCATGAATATTTT CAGTTATTTGCCATGGAGTGAAGTATGTAGATTACGTAACCTAAGTGCAG AAACTCGTTATGCTTGTCAGTACAGTGTTCATGAAATAACTGATCCAGAA GATCATAACATCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073046-exon-scaffold_86-1575043694:936275..936533 | TCONS_00073046-exon-scaffold_86-1575043694:936275..936533 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1575043694:935244..935524 | TCONS_00073046-exon-scaffold_86-1575043694:935244..935524 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1575043694:932896..934130 | TCONS_00073046-exon-scaffold_86-1575043694:932896..934130 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1510915933:936275..936533 | TCONS_00073046-exon-scaffold_86-1510915933:936275..936533 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1510915933:935244..935524 | TCONS_00073046-exon-scaffold_86-1510915933:935244..935524 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1510915933:932896..934130 | TCONS_00073046-exon-scaffold_86-1510915933:932896..934130 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1491911889:936275..936533 | TCONS_00073046-exon-scaffold_86-1491911889:936275..936533 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1491911889:935244..935524 | TCONS_00073046-exon-scaffold_86-1491911889:935244..935524 | Clytia hemisphaerica | exon |
TCONS_00073046-exon-scaffold_86-1491911889:932896..934130 | TCONS_00073046-exon-scaffold_86-1491911889:932896..934130 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:932896..936533 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR006553 | Leu-rich_rpt_Cys-con_subtyp |
IPR032675 | L_dom-like |
Blast
The following BLAST results are available for this feature:
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