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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073041 ID=TCONS_00073041|Name=TCONS_00073041|organism=Clytia hemisphaerica|type=transcript|length=568bp
GAATCGGGAAAACAATGGAAGATCCGAACGGAATACGATCGGAACCAGCA
GATTCAGAAGATGTTGCTCTCACTGATCCATCATCGACAAGTAaaccaaa
aagttttttgagatcaaaatttggaattGTTTGGATTGTAAATACGATTC
TAATGATCTTATCATGGTGTATTATTGCTGGTTGGAGAGCAAAAGTTCCA
TCagaaattgaagatgaaattgaaagccaatctTTCTTCTTAGCAGTAAC
CATATTGGAAACTCTTTTTAATACTGCAAATATCATCATCTTTATAATAA
ATGCTCatgaaagtttattgaaaatgatCAACTGGGAAATCTTTCTAATC
ATCAGTACAGCCATTGAAGCTATATTGACCTTAACAGTAGCATGTGTATT
ACTGAGCGAAGTTGAAAACTTGGACATTCTTTGCGAATTTGTCAAATGTA
AATACTTGAGCTGGGGTGAGTATACATTTTTCATTTCCTGTAATACTATT
TTCTTAAATCGAGTTAAAGAAAGTCTAACACGATAATACCTACCAAAATC
GTGAACTAATTGTTTATC Run BLAST on NCBI protein sequence of TCONS_00073041-protein >TCONS_00073041-protein ID=TCONS_00073041-protein|Name=TCONS_00073041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
IGKTMEDPNGIRSEPADSEDVALTDPSSTSKPKSFLRSKFGIVWIVNTIL
MILSWCIIAGWRAKVPSEIEDEIESQSFFLAVTILETLFNTANIIIFIIN
AHESLLKMINWEIFLIISTAIEAILTLTVACVLLSEVENLDILCEFVKCK
YLSWGEYTFFISCNTIFLNRVKESLTR Run BLAST on NCBI transcript from alignment at scaffold_86:871226..872949- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073041 ID=TCONS_00073041|Name=TCONS_00073041|organism=Clytia hemisphaerica|type=transcript|length=1724bp|location=Sequence derived from alignment at scaffold_86:871226..872949- (Clytia hemisphaerica)
GAATCGGGAAAACAATGGAAGATCCGAACGGAATACGATCGGAACCAGCA
GATTCAGAAGATGTTGCTCTCACTGATCCATCATCGACAAGTAAACCAAA
AAGTTTTTTGAGATCAAAATTTGGAATTGTTTGGATTGTAAATACGGTAT
GTTTTTGGTTATGGTTTTATTTCTTTTGAAATTCACCCCTTTTTCACAGA
CCTGGTAGGATTTTTTCGGCCAGTGGGGATGAAAATAATAGAATGAAACT
CGATGGAGATCGATATTTCCATATTTTTTATGGCTGGGGATTTATATTCC
ATTGTTTTCAAGTCGGAAAATTCAGTGGGGATGGGAAAAATAGCATTACA
TTTGGCAGTGAGGATTGGTTTATTTGATTATTTTCAGTTGGGACAAAAAT
TGGCGGATAATCTTCCACCGGCGACGATACTTTGGACAATTTCTCCAGTG
TGAAGGGGTCCTAGTGGGTCTGTGAGAAGAGGGTGTTGAAATATGAACTT
ACTGAGACTTTCCATTCACCCCTGTCTCACCTTGAAAAGGATTTTGAAGT
CATGTGTTTTTTTCTACAGAGACTATGAAGGTCTAAAGGAAAATTCAACC
AGTTTTTCTATCTGTTATGAGAAATGTTTTGTAATTTAAATTTTAAAGGA
ATTTCGAAAAATACTCTCTATTTCCATGCTTTAAGTCGACTGCTAAACCC
ATACAATACCAAGTACAGTACATCATATAATGTGTTAAAATCTTATGATG
TCTTTAGATTCTAATGATCTTATCATGGTGTATTATTGCTGGTTGGAGAG
CAAAAGTTCCATCAGAAATTGAAGATGAAATTGAAAGCCAATCTTTCTTC
TTAGCAGTAACCATATTGGAAACTCTTTTTAATACTGCAAATATCATCAT
CTTTATAATAAATGCTCATGAAAGTTTATTGAAAATGATCAACTGGGAAA
TCTTTGTGAGTGTTATATACCCTACTGTCACTCTAGACACACCCCTACGT
CTCAGACTCCTGGTGGAATCCAACTCAAAAAATCCTGCGGAGATGGTTTT
GTGGAGTGCAACTTTTCATATTGAATTTCGAATGGGAATGAAATCAAAGT
TAATTTCAAAAGTGTGGTCGTGTAGAAACTAGTCCACACTCTAATAGCCT
TATTGAATTTCGACTGGAAAATGGAGCACTTAGACTTAGGATAAAATCCG
TACAGATTTTCATAACATTCATAACTTTTTTTGAATTTCAAAGGCTCTCG
AATTTCTAATTCCTACTTTTTAACCCTTTAAGAATTGTGAAAATTGATAT
TTTTAACTTCGCATCAGAATACATAAAAAATCTAATTTATTTTAATTCCG
TGTTTTATTTAAGTGGAATCATTCAAAAGTTGTAAGTACGTGGTTTCAAG
GTTACAAGAATCATCATACTTTAAACCTAGAATTACAATGATTCAAACTC
ACCTTTATCCAAACAATTAGTCTAACTGACACTATGCTTTGCCATTTCAG
CTAATCATCAGTACAGCCATTGAAGCTATATTGACCTTAACAGTAGCATG
TGTATTACTGAGCGAAGTTGAAAACTTGGACATTCTTTGCGAATTTGTCA
AATGTAAATACTTGAGCTGGGGTGAGTATACATTTTTCATTTCCTGTAAT
ACTATTTTCTTAAATCGAGTTAAAGAAAGTCTAACACGATAATACCTACC
AAAATCGTGAACTAATTGTTTATC Coding sequence (CDS) from alignment at scaffold_86:871226..872949- >TCONS_00073041 ID=TCONS_00073041|Name=TCONS_00073041|organism=Clytia hemisphaerica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_86:871226..872949- (Clytia hemisphaerica)
CTAATCATCAGTACAGCCATTGAAGCTATATTGACCTTAACAGTAGCATG
TGTATTACTGAGCGAAGTTGAAAACTTGGACATTCTTTGCGAATTTGTCA
AATGTAAATACTTGAGCTGGGGTGAGTATACATTTTTCATTTCCTGTAAT
ACTATTTTCTTAAATCGAGTTAAAGAAAGTCTAACACGATAAATTCTAAT
GATCTTATCATGGTGTATTATTGCTGGTTGGAGAGCAAAAGTTCCATCAG
AAATTGAAGATGAAATTGAAAGCCAATCTTTCTTCTTAGCAGTAACCATA
TTGGAAACTCTTTTTAATACTGCAAATATCATCATCTTTATAATAAATGC
TCATGAAAGTTTATTGAAAATGATCAACTGGGAAATCTTTATCGGGAAAA
CAATGGAAGATCCGAACGGAATACGATCGGAACCAGCAGATTCAGAAGAT
GTTGCTCTCACTGATCCATCATCGACAAGTAAACCAAAAAGTTTTTTGAG
ATCAAAATTTGGAATTGTTTGGATTGTAAATACGCTAATCATCAGTACAG
CCATTGAAGCTATATTGACCTTAACAGTAGCATGTGTATTACTGAGCGAA
GTTGAAAACTTGGACATTCTTTGCGAATTTGTCAAATGTAAATACTTGAG
CTGGGGTGAGTATACATTTTTCATTTCCTGTAATACTATTTTCTTAAATC
GAGTTAAAGAAAGTCTAACACGATAAATTCTAATGATCTTATCATGGTGT
ATTATTGCTGGTTGGAGAGCAAAAGTTCCATCAGAAATTGAAGATGAAAT
TGAAAGCCAATCTTTCTTCTTAGCAGTAACCATATTGGAAACTCTTTTTA
ATACTGCAAATATCATCATCTTTATAATAAATGCTCATGAAAGTTTATTG
AAAATGATCAACTGGGAAATCTTTATCGGGAAAACAATGGAAGATCCGAA
CGGAATACGATCGGAACCAGCAGATTCAGAAGATGTTGCTCTCACTGATC
CATCATCGACAAGTAAACCAAAAAGTTTTTTGAGATCAAAATTTGGAATT
GTTTGGATTGTAAATACGCTAATCATCAGTACAGCCATTGAAGCTATATT
GACCTTAACAGTAGCATGTGTATTACTGAGCGAAGTTGAAAACTTGGACA
TTCTTTGCGAATTTGTCAAATGTAAATACTTGAGCTGGGGTGAGTATACA
TTTTTCATTTCCTGTAATACTATTTTCTTAAATCGAGTTAAAGAAAGTCT
AACACGATAAATTCTAATGATCTTATCATGGTGTATTATTGCTGGTTGGA
GAGCAAAAGTTCCATCAGAAATTGAAGATGAAATTGAAAGCCAATCTTTC
TTCTTAGCAGTAACCATATTGGAAACTCTTTTTAATACTGCAAATATCAT
CATCTTTATAATAAATGCTCATGAAAGTTTATTGAAAATGATCAACTGGG
AAATCTTTATCGGGAAAACAATGGAAGATCCGAACGGAATACGATCGGAA
CCAGCAGATTCAGAAGATGTTGCTCTCACTGATCCATCATCGACAAGTAA
ACCAAAAAGTTTTTTGAGATCAAAATTTGGAATTGTTTGGATTGTAAATA
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073041-exon-scaffold_86-1575043694:872804..872949 | TCONS_00073041-exon-scaffold_86-1575043694:872804..872949 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1575043694:871995..872192 | TCONS_00073041-exon-scaffold_86-1575043694:871995..872192 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1575043694:871226..871449 | TCONS_00073041-exon-scaffold_86-1575043694:871226..871449 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1510915933:872804..872949 | TCONS_00073041-exon-scaffold_86-1510915933:872804..872949 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1510915933:871995..872192 | TCONS_00073041-exon-scaffold_86-1510915933:871995..872192 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1510915933:871226..871449 | TCONS_00073041-exon-scaffold_86-1510915933:871226..871449 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1491911889:872804..872949 | TCONS_00073041-exon-scaffold_86-1491911889:872804..872949 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1491911889:871995..872192 | TCONS_00073041-exon-scaffold_86-1491911889:871995..872192 | Clytia hemisphaerica | exon |
| TCONS_00073041-exon-scaffold_86-1491911889:871226..871449 | TCONS_00073041-exon-scaffold_86-1491911889:871226..871449 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:871226..872949 - |
Blast
The following BLAST results are available for this feature:
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