|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072882 ID=TCONS_00072882|Name=TCONS_00072882|organism=Clytia hemisphaerica|type=transcript|length=180bp
TACCTTTCATAATTTTGGTGATGGGATACTTTTCATTAATAATTTTTGTG
ATTTCATTTTTCACAGAACCTTCATCTCGGCAAGTCGTTTCAAGTTTTCG
TCAATCTTCTTTCCCATAGCAACAAGACGGTTGATCTCCTCCTCGACTTT
TTTATCATGTATCTTCAGTACACCTTTTTC Run BLAST on NCBI transcript from alignment at scaffold_86:491322..500310+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072882 ID=TCONS_00072882|Name=TCONS_00072882|organism=Clytia hemisphaerica|type=transcript|length=8989bp|location=Sequence derived from alignment at scaffold_86:491322..500310+ (Clytia hemisphaerica)
TACCTTTCATAATTTTGGTGATGGGATACTTTTCATTAATAATTTTTGTG
ATTTCATTTTTCACAGAACGCTTCATCTCGGCAAGTCGTTTCAAGTTCTC
GTCAATCTTCTTTCCCATAGCAACAAGACGGTTGATCTCCTCCTCGACTT
TTTTATCGTGTATCTTCAGTCGGCCTTAAAGCATGATATATTAGAAAGGT
TTTAAGTTAGATTTTTATGATTTACATTTGCGTTTAAAGCTTACATAATT
TTATATAAGGCCAGACCGATTTAATTTgctgttctacgggcccgaccgac
cctatttttgctaaaatcaaaaaaataataatgagtTTCCACTActagga
gttgccataaagccattatggtaataacagggagggcacattgctttACA
TTGTATATTGGCTCACTGCTTTTgtagtttgagcactcttggattgggtg
gagagtcttcatttaagacgctcactatttgcattatgcattgctcgctg
ctcgcagtttgagcactcttgtgactccacaatgcaatccacaaaaagta
accgtacatcctgtgcccaagttcaggagttgccataaagccattatggt
aataactgggagggcacattgctatacatcgagtttccactacaatatat
ttcacacactagttatttgtaagaattaaatttgataaagctgaaaatga
attcaagaaattgaaaaattgagaaaatcaagcattccatacactaaaat
tttattatgatcttcatcgaagataaaaatNcccgaccgaccctattttt
gctaaaatcaaaaaaaataataatattgaatttccaatagAATATATTTT
ATGCACTAGTTATTTATAAggattaaatttgaataaagctgaaaattaat
tcaagaaattgaaaattttagaagatAAGCATTCCATAGActcaaatttt
attatgatcttcatcaaagataaaaaaaaatttttgatcaagatattttt
tggaaaatattttcggtaccttaccaaccctgataaatgaaaaatttatt
cttattttaccgaccgaccgacccatatttttctagcgatctgcccgtag
aacaacaaattaaattggtctcgcctaacttATAAaaattgattagtttg
attcgCAAACTTTGTCTTattgaatttctaaatttggtgAATATTTTGAC
GAATAATTATAATACGTTTAAATTTCGCAAGAAGCAATTTTGAAGCATTA
CGTTCACACCAAATTCCCCagcagaaaaaataattttctaacgAGGATGA
AATATCggaaatgataaaaattttaccttctttttcttcaacttttccaT
GTTCTGCATTGACAAACGAAACCATCAAGAAGACGGCAAATGCAAATTTT
AAATCCATGATATGATTTGGTACCAAAGATGCTAAAAAAGTAGCATTCAG
ATTTTATAATCAGATAGTTACTTCGCCGAATACAAAAAGATCCACCCTTT
TATTATTGCAATTTAATTGCCGCAAATTAAAGCGATATTTGATATAAAAA
TCCCTCAAGAACTGACATTCATAAGATCAAAACATTAACCCTAAATTCGG
TAGAGCTTCATTCAAGACAAATTATAGTACATTCATAAAAAAGATCcact
cttttatttttattactgCAAATGAATCGCCACATATTAACCGTGCAATC
AAAAGTAATCGAttgccaaaaattaagaattaacTAGTTAGGTCACTGAT
GGAGGTAACATCACTCACTCCAATgttgatttgaaatttgaaattttaat
tgttACGAGATAATTTGATGCCTCTTCCGGCCTCCTCAAAATTAACTTCT
AACGCACTTTAAGCTTAATTTCTGTGGAGAACTACTGAAAACCTTGATCG
ACTCCCCCCCCCCATAAGTCAAAGATAAAATATCAGATTTAGATTCCCTG
gtttaattcaaattttgtcAAGGTTTGAAGAAATTATGTTACAGTACATT
ATGTACGAGATTTTTGGTGTCcaaattaagggctctgactatAGTGAATC
TTTtatatttgccacttacaaaattCAAAGTTCTACTTaatgtagcccac
aaaactgtggcatgttatacattttctgttaggccaattatccttgaTAT
ATATcgcaatgaaataatttgatgaagaagaaaatgaagacttttgcgaa
gaagagtatttcaactttgaagagcttagtttcggcggagaaaaaacatt
ttgaaagaatttttgcggtagatggtgaatcttttatcaaactaaaattt
ttttaaacaacttttgatgcattaatttagaaaatttttccgaaaaattt
gaaacagTTTAATTCTTTGCGgatagtttgaaaaaacttcgaaacaaaaa
gtttaaaactttttataaaagaaggtggtacaacatattattaacatatt
tttaaagttcataacgtcatttttgtaattaaattcttaattagtcttaa
gggatttgattaaaaagcaatttataaaggcaattctttgttaaaagtgt
taaagaacctaaaacataacttttatgttcaaaaatactaaaatcgATTT
TCCGACCTTGGTCAGACCCCTTAAAAAACATATAATTGAAGTCTagtcac
gataagtgtgcactagtaaattttgctttgcttgttatttctcaaccaat
gcttcaatcttaaaaagtttggtatcgttggGAAGGTGGGAAGGAGCTTA
TTAATTTACTGTTAGTTTTTTCCGTGAAATTTGAAAGGaacatgaagaaa
aatgaagaagaaaatttaactttttataGATAGGTCGTATATAAACGTTA
TTTTTACATCTTTGAAAAGCTTATTAAAGCTTGGAgatttcaaaattata
tttttactgtagcaaaatttagtgcacacttatcgtgaataacTTTAAAC
CtttatctttttgaaattttgatcgtTCTTTGAACAAAATTTTACCAAAG
AAAGAGTCGAAATTCTGTCCCAATGAAGACGCCAAAAACACCTCATCTAA
TTTAGTATTAGGTAATCATTTCAACCATTTCAATTTTAGATCCTATACTT
ATTAggacgaattttttttttctttaaaactttaaagaaaataacaaaaa
tgaaagattCAGAATAATGTTAGAGATGAATAGGTAATATAGCCTTACAG
AGTTGTCGAAGTAAAGTTGTACGATGGAAGGAGGTTGCCTCTGCCCCCAA
AATTTACGATGGCAAGAACAAATGtttcaagaaaaacacttttcacCTCT
CTGATGTTGTCTTGTTGTGTGTGatcgcaaaaaaataaaatttaaggagC
TCCCGAATTCCTGAGAGACTTTAAAATGATAAAGTTACACACTATATTCC
CTCAAGAGTGTAAACAcccatttttttatttattgaattttcaaattcca
GAAGACAAAAATTCCCAGGAGACGATGGTTTGACACAGGcggtaattttt
caaatttctgtcCAGAAAACAGGTAGAAAATCACTTCACAAAATTAAGTG
AAGCTTATAATATATCTTTCTTTTGTAGGATGAATCATCATTAATTGTAA
AGCCCCGAAGGAgctagagatgaatcttcaaTCCTTCTCAAGAGGAAAAA
GTGAAGCATTACAATTTGCGCTGCATTTAGAATGACGGATTAAATTCAGC
AATCTAGCCTTTTCTTTATTTCCAAGCAGCATTGATTTTCAAATCTGGCG
ATGGATTTTACTAAACCACGTGGGTTGCACGTTTTGGATGGAAAATAATT
AGGTTTCATTTTCCATTCAGGAGTTTCAGATCTATGCCCCTTCGTGGCTT
TGAAATCAATTGGATTAACCTCAACCGGCTGGATTTACTTCCAAGAGCCC
CTCCCAGTCGACCCTTAATTCGCGCACAtaattttgccaattcacgtctt
cacgcgcgaaaaaaaaacaccttcacgttcacgcgccaattttgctttta
catctttggttaaaacgattgtgaccttattgggctaaatatgACCTTTT
TATGGTTTCTTTAAGCagtttgacctattcttatgccaaacattttcgcc
aatatgAAGTATTCTGCAGTTTTGTGACCTTGTTCTCGATAGCGTCGACC
TTTTAAGgcatcttttacagctatttgagctttaataaagcaatatttta
ggtctgcagcgccaaagttacaaagaacTACCCCTCTGGCGAAGGGTGGG
CTTTTGGTGTGGGATTTTCTTCCTCGCAGAACCGTAAGaagtctttttaa
ttttaagtcGAGCTTGGGCCAATCATGGGttgagaagccgtagactttAA
CACAAGCTTCAAAGAGGTGAAATGGTAGCAAAATCAGAGGAcgaaaattg
caacttttgacCCCTATCTCATTTCGACAATTTCCGCCTTTTTATTATGa
ctgaaaaacggccttaatacactattgttagccaagtataccttgtttgg
tcacacaattcTTATGAAAATCTTTGTTTTATTCAACACTGATGATTCGT
TGGCAAAAATCTGGTACGACGGGATTCAAAACTTGACCTACATTTAATGG
GGCATATACTACAAGCCTTAAGCCTACTTTTATTTCAGTTTCATGGTATA
TTCTACTTCTAAGAATTTTGGAGCTTTTCGCTTGCCGCCGAGAATAGATT
CTGggaaattttgttgattttcattctacagggtgtccaataaaagtatc
gagttcgaacatgattctgagtagaaggttgcGGCGTGtgaattagataa
aaattgcatataactcactctagctccttggatattgaaaataagttatg
aaaaaggggtataggaaactttctacacctaatgccgttcagaaaatgta
aatatatctgtgactttagaggctgggtaaaagatatagcatcttcaAGG
ACAACCAGTATTTTTGaaccctagaatcagcattgacaaaaccaaaaatt
ctaaatgtgagaaaaagcaaaaaatcttggaattcNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAaaaac
ttccaggaaataaagtagagatgttaaaggttttcatgcagcaaaaattt
ttgtaaaatctcttttcctctagatttgagagaaatttcaaattggatCG
CCGTTTTGGAGGCCACATACTGTATAGAAGTGGTACAGGCTTGaagacac
gagaagtttttttcgcgttggtgcaatgcaatatGCTCCATcacaccaac
ctgaaacgctttctcgtgtctccaccccattctTCTTTTTACCAATAAat
gtgaaatctcacttttgtacCTGGGAAATAATCAGCGTATCTTTTacgta
tttccctcactttttgtcccatgaaataaaataagaaaccatgggacaca
ctttttcttgtgttggtggggtGGAGCATGTCGAGGAGCATGTTGTATTG
CACCAACCCCCAAAGGTGCCGTGGTAagataaaaaattctattttagcTC
ACGTTACAttgcaatagaatttcagcgcttgaccaatcagaactTTTGTT
GATTCGGGATGTACAGTGTGATCTAGCCTCTACTTAGCAGACACCATTGA
GAAAtctcataatatttgagaaaaaagggaaattcaccgggaagttttga
aaccacaatcgatttgtaagtgctttaAAGCAGGTTCGAAGGATAGAGTT
TTAATGCTAGACTTTAGAGAGATAGCCCAattcgactttctcgccggaac
tttaaatcttgaaaaacgttaaaataattggaatttgcaatatatttcaa
ccataaTTATAAACCTATCAGACTCTTGGAGGATGTCGAAAGGACACCAT
CGATTATTCAAACACAACATAGTAAAGGGCCTCCCCTTAGGATCCGTAGC
GTCTTTCGTTGAACGCAATACGAcatgtgattggttcgaaaaaaaaaata
ggaTTTCAGACTTTTTATGAGAGGGGGGTCACGGCTAAAGTTTTTATGGC
TAAAAAAATTACGTTTTAggcaaaactccaaaaaagaagaataatttacg
attttttttcaacgaaaatgattgatacTATCAGATAGAGCATGAAGTTC
TGAGCAAAGGATATATTACAACAAGGTTTGTACTGAAACATATCAAgtgg
agtggtcagaaagtgtTTACTAcgggggagtggaggatatttcgaaaaat
caaaaaaaaattttgcaccCCCACCCCACCAGGGGCGACGTGTCACATAT
AAATCGGGTCTAACTACAGTAAATTTCCAGATTGTGAGTGCAATCCTATA
ACCCTCAATATCAAAATGTTGTGCACTCATGTGGGGAGCATTGACTACAT
TATATAGAAGGCGACAAGTGGCTTGATTTCAAACATGCAGGGGCAAAGAA
tttagtgactaaggaggcgcaaccaggAGAAAATTCTGACTTTGGACTCC
TGATTTCCTTCAAACATAGCTCTTTTTGGACTGATTTAGCCCAGAAATGA
GGCTTTCAATGTCTGAATCATATGGAATTTTAAAAGTGAAGTCTTTCTTT
GCATATACAATATCTCCGTTAAGACCTGTAGGAACCTAAATGGTGACCCC
tccctaaaccctcaaaaacatttttggaccTCCCCTCCCTGAAATCCTAA
ACCCCCCATAGTAGATGTATTTTACAGGATTTCTAAGTTTAAATGGGTAC
atcgaaatttttgtttttgagtatAATCTCACTAAAGGTTTGCCCTTACT
AACAAACTTCTTTTTATGAATCGATAAAATCCAaatttacacccctgtgt
cacagacccggtggaccccccgccccactggaaaaattggccaaaaaatt
gtccccggtggaaaaaaatccctaaaattccatccccactgggaaatcga
TCTATGATTTTGTCCCCATTGGAAGTTGAATAAAagaaattgcacttcaa
aaccatccccgcTGGAATTTTTTAGtttagctggaaacaatagattttct
atcccaattggaatttcgatagaaattttcatccccactgagggaaaaag
ttccaccgggggactgagacaggggtgtaaatttGCTAACAGGGTGAACA
GAAGATGTGTTTaatattttcaggttttcaaCTTGACAAATAAAcacttc
aaatttgtaaatcagatttgcaaaaaaatacttaaaatagATGATTTCAA
AACACTCATTTCTTTCGTATTGTTTATATCTGAAAGAAGCTTTACCCTCA
ATGCCCGCTAATGGGGTATTTTCACCATTGTAGATGGGATCactatatat
tttttcattcgGGATGGgagtcccaccgggtctgtggtACGTGTGATATG
AATGAAAAGGATGAGTTTGTTTCAATAATTAACATTCTAATGTTTTGTAT
ACAAAAAATGACTGCAGTAAAAGAAATTACAATATTTTGTCTGAGCATCA
TTTGATTGAATTATctacaaaaatagaaaagctaCAAAACGAAGTAACGA
AAGTCAAGCCTAGATTTTTGACATTACCATCAGGGAGCCAAAAGTTTAGC
CGATGCAACACCAAATAACCCATGGACAACAACCACCGTTTTCAGATCTC
TTGTTGTAATAATCTGATTGTTGACCTGtagtaataaaacaattgtGGGT
ATGATAAAAAATGCACATTGAACATGCAAACTATTTATACTTACACTCTT
ATAGAAGAACAACCTTGATAAAACAAGGCTTGATTTTGGCAAAAAGGCTG
AGGACAAGTAAGGAACAGCCGCAACCTCAGATTAAAAATCGCATAGGAAT
AAGATTTCAAGCCAAATTAGTCAATAAGTGAAAAGTAAAgataataagaa
caatttaagaatatcttagtcttaaaattgcaaaaaattaagaacagttg
aACCACAACCAGAATTTACTAGTCCACATATAAAAAATCtcgaatttaaa
tttttcgccTCTAACCTGACTACTTCGGTTCAGAAATATTCCCCTTTTCA
GAAGGACTTTTGGACAAAATGTTTGTGTATCTTATAGATAGTGTGTAACC
AATTAAGTACAAGCTCGAATTACCTTGGTAGGATCGGAAGCCGCCGGTCT
GCCTGGTTTTTActcaaatgacagattgaaactaaaatttactcctaaat
ttcgaaaagatgtatcactcgaaaacaaaggaatctgTTTCAATTCGTCG
TCACAAATACGGCATATATtttaaggtttcactttttttttgcccGAGAA
AGGCAAAAGATtcaattctagcccttcgggtttaaATGCTTCATTGAGTG
TATAAACATACCTTTCATAAATTTGGTGATGGGATACTTTTCATTAATAA
TTTTTGTGATTTCGTTTTTCACAGAAAGCTTCATCTCGGCAAGTCGTTTC
AAGTTTTCGTCAATCTTCTTTCCCATAGCAACAAGACGGTTGATCTCCTC
CTCGACTTTTTTATCATGTATCTTCAGTACACCTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072882-exon-scaffold_86-1491911889:491322..491390 | TCONS_00072882-exon-scaffold_86-1491911889:491322..491390 | Clytia hemisphaerica | exon |
| TCONS_00072882-exon-scaffold_86-1510915933:491322..491390 | TCONS_00072882-exon-scaffold_86-1510915933:491322..491390 | Clytia hemisphaerica | exon |
| TCONS_00072882-exon-scaffold_86-1575043694:491322..491390 | TCONS_00072882-exon-scaffold_86-1575043694:491322..491390 | Clytia hemisphaerica | exon |
| TCONS_00072882-exon-scaffold_86-1491911889:500200..500310 | TCONS_00072882-exon-scaffold_86-1491911889:500200..500310 | Clytia hemisphaerica | exon |
| TCONS_00072882-exon-scaffold_86-1510915933:500200..500310 | TCONS_00072882-exon-scaffold_86-1510915933:500200..500310 | Clytia hemisphaerica | exon |
| TCONS_00072882-exon-scaffold_86-1575043694:500200..500310 | TCONS_00072882-exon-scaffold_86-1575043694:500200..500310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:491322..500310 + |
Blast
The following BLAST results are available for this feature:
|
