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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072990 ID=TCONS_00072990|Name=TCONS_00072990|organism=Clytia hemisphaerica|type=transcript|length=1142bp
cacgtgtcgttaaagagaacaattaaaatcacgtgtccaaaacaaacttg
taaaacaattgaacaatcaaaattagccatatttggtttgattttttatt
ttgacatgtgacatttgttttgattttgtatccgctgcatacagtttgtt
tacaaatttcgcaagtactgtgaTGTCCCTTTAAATGATTATTTcattaa
aagaaaatagttctaataaaatccactgggtgttaatcaccatggcaata
atttcaaaacgaggcaagtgatgttcgtaacgtaatttatgaaaaagtct
attgtattactttttagaaaatagatatttagaaattcaaaatggtggaG
AATGAGATGATTCCACAAAACACTGGTGGTGGACCATCCttaaaatttct
cagaaatccTTCTGGTGTTTTATTACTTGTCAATTTTtTAATGGTGATGA
TTTGTTGGTGTATATTAGCAGCATGGCGTGGCAATGTTTCCGATATAGTA
GCCGATCAATTATTTAATCAAACTGGTTTCTTTTTGTTCTGTACAGTTCT
TCCCTGGTTGTTCTACTTCGTCTTCTTCGTTATTCTTTTGTTAGGATGCA
ATGAACaatatcaaaatatcaattACGCTAGATGGTTTTTCATCAACAGT
GTATTGTGGGCGTTCTTATTATTCATCGCATCCTGTGTGCTGGCTGGTCA
GTCGAATAAAGATCCATGTGATGCCTACCAATGCGAACGACTCAAAGCTG
CAACGGCATTTGGATTTTTGACCGTCATCACGTTAGCTTTACACGCGTAT
TTCTATTACCGCGAATGGAGAAGTAGCAATGAACCTTACGAACGTGCTGG
TGCTATTTAGAAAGAGGATTGGGAACGAATTCCTTCATCATACAACAAAC
ACATTTTCTATTGTAAATCTTCACACGTTGTAAATTTGTGTATCTTAACT
TTTGGATTTGGATTTGCCGAAACATCttggttggaaagataatcATGTGA
AACAATATACTTGCTGTGAAGTTACTTCACGATTGAATGTATCAGACTTT
TACAAATAAGTAATTTCGGTTAAAGAAGTAatcgagtttgaaaaaaaaac
aatttgaaataaatatacatACGTTGTTTTCAAAACTGCGGT Run BLAST on NCBI protein sequence of TCONS_00072990-protein >TCONS_00072990-protein ID=TCONS_00072990-protein|Name=TCONS_00072990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MVENEMIPQNTGGGPSLKFLRNPSGVLLLVNFLMVMICWCILAAWRGNVS
DIVADQLFNQTGFFLFCTVLPWLFYFVFFVILLLGCNEQYQNINYARWFF
INSVLWAFLLFIASCVLAGQSNKDPCDAYQCERLKAATAFGFLTVITLAL
HAYFYYREWRSSNEPYERAGAI Run BLAST on NCBI transcript from alignment at scaffold_86:381596..386919- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072990 ID=TCONS_00072990|Name=TCONS_00072990|organism=Clytia hemisphaerica|type=transcript|length=5324bp|location=Sequence derived from alignment at scaffold_86:381596..386919- (Clytia hemisphaerica)
CACGTGTCGTTAAAGAGAACAATTAAAATCACGTGTCCAAAACAAACTTG
TAAAACAATTGAACAATCAAAATTAGCCATATTTGGTTTGATTTTTTATT
TTGACATGTGACATTTGTTTTGATTTTGTATCCGCTGCATACAGTTTGTT
TACAAATTTCGCAAGTACTGTGATGTCCCTTTAAATGATTATTTCATTAA
AAGAAAATAGTTCTAATAAAATCCACTGGGTGTTAATCACCATGGCAATA
ATTTCAAAACGAGGCAAGTGATGTTCGTAACGTAATTTATGAAAAAGTCT
ATTGTATTACTTTTTAGAAAATAGATATTTAGAAATTCAAAATGGTGGAG
AATGAGATGATTCCACAAAACACTGGTGGTGGACCATCCTTAAAATTTCT
CAGAAATCCTTCTGGTGTTTTATTACTTGTCAATTTTGTAAGTATGCTAC
CTTTTTCTAAATCTATGTTTTGGAGACTTTTAGGGAAAAGTTCTGGATGA
ATGACCGTGAATTTTAGCTGTTTAGTCTCTATTTTATGTTCCGTACACAG
TAGCGCAGACAGAATAAGGGGCGCAAAATTTGTGTAGGAGAGCAGATTTT
TATAGCATTGTAATTTTCTTTATCTATACCATGATGAATAGATAATTAGT
GTCATAAAGATCTGCCCCCTGCTCTCCCACACAAATTTTGCGCCCCTTTT
GGCTACGCTACTACCTACACTTTTTGCAAATATATGCATAAACGATACAA
ATTCTCGAAAAGTCAAGTGACATAGTTCCGAGAAATTGAAAAATATGAAA
AATTGTGAAACAGGCTTTCTTATTCCTTTTATGATACATAGTCTCCTTCG
GATGCCATGTCGGATGCGTCCGGCAGTTAAAACTTAGACTAACATTTATC
TCTGCAGTTTTACCTCCCTAATGTTTCTCGAGTGAACCTTTCGCTATTTA
GAGGCTTTTATTTTGATAATCCGAAAACCTTTCTAATACCGCCTGACCCA
TATCGGCCCGCCTGAGTGACTTAGAAACATCCTTTTTGACCTCTTCCGCC
CTAGCAAATCGGGATTATATTATTACCGAGCTCAACTTCTCTACAAATTC
ACGTGTAATGACCTTCAATGACTGCTTATATTTCTGGCCGCCTTTCATTT
AGAGATAATATGAAGCTGAGAGACATAGCTAGAAATGGCTGAAACGACCT
AGCAAAATTTCTGAAAAAATCGGGGTAATAGCTATGAGGCTACGTACAGC
TTCTCTGTCGAGTTTATAAAAAAACAATACTGAATTCACATTTCCTAGAG
CTTATCTCTTTCACAGTTTTTATTGAGAGAAGCTCAGTTTACAGAGCTGA
AATTGGCTGAAGCGACCCAGTTAACTTTTGAGTTTGATCTGAAATTTTGT
GAAAGTCAAAGTGACTTTCACGTCTTAACTGATCTTATAGCTTTAAATCT
TGTGGATTGATTGCTAAGAATTGATCGTCAGGGTATTAAGCATCAGCACC
AGTTGTCACGGCTTTAAGTTGAACTAATAATGGTTATTTTTTAGCAAAAA
TGAAGCATTTTTCAAAGTCTTTCAAAACTTTGTTTTTACCTGCTTTTTGG
TTGTTGTTGTGAGCGAAAATGAATATCTGAAATGATTTGACACCATTTAA
TTATTTGCTATTCAATTCAAAACATAAAAAATAATCTTAGGGATATATAA
GGCCTATAAACTCGACTATAACTCCACATCAGTATCTATTTTTTTACCAC
AAGCGGTTAATTAGCGTAAAAAGCTAGTCAAAACGTGAGACAGGGGTATT
GGTAGCAAAAATTTCTCATAATTTGCAAAGTACGAGTGCGATACAAGGAA
CCACTCGGCTTCAAATTTTTGACCTACTTGGCAAAATTCCTAAATACGCC
ACTGAAAAGATCCCATACAAATGATGTCATTTGCATGCCTACTCCGGCAG
CCATTTTCATATTAACATACTTTTCAGCCTAGGGAATTTGAATAAAACAT
ATATAAACGGTTTCATATGAGGAAAGACCTTTATTTCATTCCAATGAATG
ATCTATATTAAAATATTATAGTTAAAGTCTATTCACGATAAGTGTGCACT
CTTTTTTCATTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAA
TTTGGTATCATTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTCGCTGATTGACGTCTAAAAACGCTGTTTTCTGCAGTTTTTTGCTGT
TTTTTGGGGTCAATCACTTATTAACTTTGTATCATAACTTTATATCGAAT
AAATATTTTAATGAAATTTTTTCACAGTGATGATCTCCTAAGATCAAAAA
ATCTCTCCAGTGAAAATGAAAGTTATAGCACTTTTCTACAAGATCTTCAT
TTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAATTCTTTTAAAGATTT
TTTTATTTCAAATTGTTCCACTCACTAATATCTTTCCAATGATACCAAAT
TTATAAAGATTGAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGA
GTGCACACTTATCGTGAATAGACTTTAGTAACTGTGATAATATTCCACTC
ACGAATATCCATTCAACGAACACAAAACAAAAGTTTCATGATATGCACCA
TATTGCAATGTCTTCTGACATTACATCACGGACCCAACAGCTGATTGGTT
GATTGGTGACGTAAAATCAGTCAATACGTCACTTTTAACCAATCAGTTGT
TGGGTCCGTGGAAGACATTGCAGTGGTGCTATCATGAATAGTAAGACTTA
TTCCATTGTTACTGGAAATGAAAATAGATATATTTTTTTTTCGTTTTTCA
GTTAATGGTGATGATTTGTTGGTGTATATTAGCAGCATGGCGTGGCAATG
TTTCCGATATAGTAGCCGATCAATTATTTAATCAAACTGGTTTCTTTTTG
TTCTGTACAGTTCTTCCCTGGTTGTTCTACTTCGTCTTCTTCGTTATTCT
TTTGTTAGGATGCAATGAACAATATCAAAATATCAATTACGCTAGATGGG
TTGGTAGTAATTTTGTTTGAGCTGGAGTTTTTTTAAGATTTTATAAGATA
CTTTACAAATTGTCATTTGAAGTAATAGAGGTGACGCGTTCTTCAGAAAA
AGGAACAAAATTGCTTTTATTACATGTTGACGACCAACCAAAGCAAAAAT
AACAGTTTATAAACGTTCCAGTTTGTCCCCTTTTTTGAAAAATTGTACGT
CCTGTGATCTCAAATAGCTATGATTCTGTTATGCATAGTTTGAGTCTCAA
GAGAAGATGAAACCTTCTCTTAGACTTAGAAAGGGGAATAATACCTTTAT
CCCACTTTTTTCCTCAGTGGGGATAAAAATTCCTATTGAAATCCCAACGG
GGATAGAATTTCTATTATTCAAAGGCTAAAAAATCTAGTGGGGATGGTTT
TGGAGAACAATTTTTAAACATTTAATTTCTTGTGGGGATGAAATATAAGT
CAATTTCCCAATGGGGCTAAAATTCCAGGGTATTTTCCTACCGGGGACGA
AGTTTTTGCCAGATTTTCTAGTGGGGCTAGGATCCCAACGGGTCTGTAAC
ACAGGGGTGCGAAATACAAGATATGGGGTACCAAAAGGAGAAAGGGTCGA
TCTACAAAAAACCTTTTTGGAAATGATTTGTGCATTGAACTCCTTAGGAG
GCTCAAATACAGAGCTTACTGGTTATTGAAGATTGCTGTTTTACGGGCTT
AAATAGTCAAATGAAGCTCCTATTATTGTAACCAAAGATATATGAATGAG
TTTGAATCGTTTTTCATTTCAGTTTTTCATCAACAGTGTATTGTGGGCGT
TCTTATTATTCATCGCATCCTGTGTGCTGGCTGGTCAGTCGAATAAAGAT
CCATGTGATGCCTACCAATGCGAACGACTCAAAGCTGCAACGGTGAGGTT
TCACCTCATAGATTTTCGTTGTTTTCTGTTATACTTAAGCTAAGAAATTT
CTACAAGGAAAAAAATGTTCATCATCAGCGATGCCAGCCTTCTTTGAGAA
TTTATGGAATTTTGGAAAACCATTTTGTGGGTTTTTATAGTAGAGGGTAT
TTTGTAAAATCGCTCGACTGTTTTGTTAGAAGCACTTGTTATACATTTTT
GGAAAGCTAAGGGGTAGGGGAATCGAAATTACTATGTTTCCAATTTTTTT
TCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTAGCTCGAGAAAACGGAGACCTGTTGTATATTTTTGGAAAGCTCTCAA
AAAATTAGGATTAGAGATATATTGCAAGTATAGGTGATTTCAGTACCTAA
CTAATAGAAGCTATTTCTATTTATGCTTTACCATTTACAGTTAACTTCAT
GGATTTACCTGCAGTTTTTAGTATCGCTAAAATTATTGGAATACCAATAA
AAATGAAGATCCAATCAATGTTTTCTTTTCATTATAGGCATTTGGATTTT
TGACCGTCATCACGTTAGCTTTACACGCGTATTTCTATTACCGCGAATGG
AGAAGTAGCAATGAACCTTACGAACGTGCTGGTGCTATTTAGAAAGAGGA
TTGGGAACGAATTCCTTCATCATACAACAAACACATTTTCTATTGTAAAT
CTTCACACGTTGTAAATTTGTGTATCTTAACTTTTGGATTTGGATTTGCC
GAAACATCTTGGTTGGAAAGATAATCATGTGAAACAATATACTTGCTGTG
AAGTTACTTCACGATTGAATGTATCAGACTTTTACAAATAAGTAATTTCG
GTTAAAGAAGTAATCGAGTTTGAAAAAAAAACAATTTGAAATAAATATAC
ATACGTTGTTTTCAAAACTGCGGT Coding sequence (CDS) from alignment at scaffold_86:381596..386919- >TCONS_00072990 ID=TCONS_00072990|Name=TCONS_00072990|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at scaffold_86:381596..386919- (Clytia hemisphaerica)
GCATTTGGATTTTTGACCGTCATCACGTTAGCTTTACACGCGTATTTCTA
TTACCGCGAATGGAGAAGTAGCAATGAACCTTACGAACGTGCTGGTGCTA
TTTAGTTTTTCATCAACAGTGTATTGTGGGCGTTCTTATTATTCATCGCA
TCCTGTGTGCTGGCTGGTCAGTCGAATAAAGATCCATGTGATGCCTACCA
ATGCGAACGACTCAAAGCTGCAACGTTAATGGTGATGATTTGTTGGTGTA
TATTAGCAGCATGGCGTGGCAATGTTTCCGATATAGTAGCCGATCAATTA
TTTAATCAAACTGGTTTCTTTTTGTTCTGTACAGTTCTTCCCTGGTTGTT
CTACTTCGTCTTCTTCGTTATTCTTTTGTTAGGATGCAATGAACAATATC
AAAATATCAATTACGCTAGATGGATGGTGGAGAATGAGATGATTCCACAA
AACACTGGTGGTGGACCATCCTTAAAATTTCTCAGAAATCCTTCTGGTGT
TTTATTACTTGTCAATTTTGCATTTGGATTTTTGACCGTCATCACGTTAG
CTTTACACGCGTATTTCTATTACCGCGAATGGAGAAGTAGCAATGAACCT
TACGAACGTGCTGGTGCTATTTAGTTTTTCATCAACAGTGTATTGTGGGC
GTTCTTATTATTCATCGCATCCTGTGTGCTGGCTGGTCAGTCGAATAAAG
ATCCATGTGATGCCTACCAATGCGAACGACTCAAAGCTGCAACGTTAATG
GTGATGATTTGTTGGTGTATATTAGCAGCATGGCGTGGCAATGTTTCCGA
TATAGTAGCCGATCAATTATTTAATCAAACTGGTTTCTTTTTGTTCTGTA
CAGTTCTTCCCTGGTTGTTCTACTTCGTCTTCTTCGTTATTCTTTTGTTA
GGATGCAATGAACAATATCAAAATATCAATTACGCTAGATGGATGGTGGA
GAATGAGATGATTCCACAAAACACTGGTGGTGGACCATCCTTAAAATTTC
TCAGAAATCCTTCTGGTGTTTTATTACTTGTCAATTTTGCATTTGGATTT
TTGACCGTCATCACGTTAGCTTTACACGCGTATTTCTATTACCGCGAATG
GAGAAGTAGCAATGAACCTTACGAACGTGCTGGTGCTATTTAGTTTTTCA
TCAACAGTGTATTGTGGGCGTTCTTATTATTCATCGCATCCTGTGTGCTG
GCTGGTCAGTCGAATAAAGATCCATGTGATGCCTACCAATGCGAACGACT
CAAAGCTGCAACGTTAATGGTGATGATTTGTTGGTGTATATTAGCAGCAT
GGCGTGGCAATGTTTCCGATATAGTAGCCGATCAATTATTTAATCAAACT
GGTTTCTTTTTGTTCTGTACAGTTCTTCCCTGGTTGTTCTACTTCGTCTT
CTTCGTTATTCTTTTGTTAGGATGCAATGAACAATATCAAAATATCAATT
ACGCTAGATGGATGGTGGAGAATGAGATGATTCCACAAAACACTGGTGGT
GGACCATCCTTAAAATTTCTCAGAAATCCTTCTGGTGTTTTATTACTTGT
CAATTTTGCATTTGGATTTTTGACCGTCATCACGTTAGCTTTACACGCGT
ATTTCTATTACCGCGAATGGAGAAGTAGCAATGAACCTTACGAACGTGCT
GGTGCTATTTAGTTTTTCATCAACAGTGTATTGTGGGCGTTCTTATTATT
CATCGCATCCTGTGTGCTGGCTGGTCAGTCGAATAAAGATCCATGTGATG
CCTACCAATGCGAACGACTCAAAGCTGCAACGTTAATGGTGATGATTTGT
TGGTGTATATTAGCAGCATGGCGTGGCAATGTTTCCGATATAGTAGCCGA
TCAATTATTTAATCAAACTGGTTTCTTTTTGTTCTGTACAGTTCTTCCCT
GGTTGTTCTACTTCGTCTTCTTCGTTATTCTTTTGTTAGGATGCAATGAA
CAATATCAAAATATCAATTACGCTAGATGGATGGTGGAGAATGAGATGAT
TCCACAAAACACTGGTGGTGGACCATCCTTAAAATTTCTCAGAAATCCTT
CTGGTGTTTTATTACTTGTCAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072990-exon-scaffold_86-1575043694:386483..386919 | TCONS_00072990-exon-scaffold_86-1575043694:386483..386919 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1575043694:383571..383768 | TCONS_00072990-exon-scaffold_86-1575043694:383571..383768 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1575043694:382678..382797 | TCONS_00072990-exon-scaffold_86-1575043694:382678..382797 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1575043694:381596..381982 | TCONS_00072990-exon-scaffold_86-1575043694:381596..381982 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1510915933:386483..386919 | TCONS_00072990-exon-scaffold_86-1510915933:386483..386919 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1510915933:383571..383768 | TCONS_00072990-exon-scaffold_86-1510915933:383571..383768 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1510915933:382678..382797 | TCONS_00072990-exon-scaffold_86-1510915933:382678..382797 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1510915933:381596..381982 | TCONS_00072990-exon-scaffold_86-1510915933:381596..381982 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1491911889:386483..386919 | TCONS_00072990-exon-scaffold_86-1491911889:386483..386919 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1491911889:383571..383768 | TCONS_00072990-exon-scaffold_86-1491911889:383571..383768 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1491911889:382678..382797 | TCONS_00072990-exon-scaffold_86-1491911889:382678..382797 | Clytia hemisphaerica | exon |
| TCONS_00072990-exon-scaffold_86-1491911889:381596..381982 | TCONS_00072990-exon-scaffold_86-1491911889:381596..381982 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:381596..386919 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008253 | Marvel |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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