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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072853 ID=TCONS_00072853|Name=TCONS_00072853|organism=Clytia hemisphaerica|type=transcript|length=918bp cCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcatgtttt ttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgTCGAGC ATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAAGGTTT TTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAATGTCTG TATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAGAGGAG AATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAAGATAC CAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATTCACCA CTTTAGTGACATCTCTATCAACATTCACAAGAGATCTGTAGCGGTGATAA CATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAAAATCAA TtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTACAATGT GATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAAATTTAG GTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGAAAAACC CCGCAACCGAATACACATTTGATCTTGAGTTAAATAACAATAAATACCTC CCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTATAAAAGAACTGA ATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGGACTGGAGAGGT TGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGTTAGGAAAATTc gcttttttagatttttaactACTTTTCATCTTATTTTGTGCAAAAGTAAA AGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGCCATTTTATAAA GGTTGGTATTGAATTTTT Run BLAST on NCBI transcript from alignment at scaffold_86:299831..301354+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072853 ID=TCONS_00072853|Name=TCONS_00072853|organism=Clytia hemisphaerica|type=transcript|length=1524bp|location=Sequence derived from alignment at scaffold_86:299831..301354+ (Clytia hemisphaerica) cCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcatgtttt
ttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgTCGAGC
ATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAAGGTTT
TTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAATGTCTG
TATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAGAGGAG
AATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAAGATAC
CAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATTCACCA
CTTTAGTGACATCTCTATCAACGTAAGCAACTTttgattctttgattttt
tatatttatgtttGTTAAGTTACgcaatttccgccattatggaagcagaC
GCTCGAATCTGTATAGATTCGTAATAGTAATTTAACCAAACTTGAATAAC
CTCCATTTCCAGTTCAAATTTTAATTGGTAAGGTCCCTTTGTTCATGATA
TGAAAATCCTGGGAAATCCAAAATCAGTTGAAAGTTTGGGACCGCTTTTG
ATTCATTGCTCCGTTTTATTGAAGTTTGCTGAAACTTTTGAACAATTCTT
AAGGTAGGCACgataaaagaaattgaaatctGATAGCATTAGATAAATTT
TTCAGGAAAGTTTTTAGCCATTTTAGGGTACTCACTAAGTGGTCAAAGGG
AACAATCTGGTAAGCCCTTCCCATTTAGTATCTTGAAAGATTGCTCACTG
GTTTTATAATCAATTTATCTATTTTAGATTGTACGATGTTAGGTCAATAT
CAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTGTC
GAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATGGG
ACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGCGG
TGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAA
AATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTA
CAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAA
ATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGA
AAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATAACAATAAA
TACCTCCCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTATAAAAG
AACTGAATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGGACTGG
AGAGGTTGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGTTAGGA
AAATTcgcttttttagatttttaactACTTTTCATCTTATTTTGTGCAAA
AGTAAAAGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGCCATTT
TATAAAGGTTGGTATTGAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072853-exon-scaffold_86-1491911889:299831..300202 | TCONS_00072853-exon-scaffold_86-1491911889:299831..300202 | Clytia hemisphaerica | exon |
TCONS_00072853-exon-scaffold_86-1510915933:299831..300202 | TCONS_00072853-exon-scaffold_86-1510915933:299831..300202 | Clytia hemisphaerica | exon |
TCONS_00072853-exon-scaffold_86-1575043694:299831..300202 | TCONS_00072853-exon-scaffold_86-1575043694:299831..300202 | Clytia hemisphaerica | exon |
TCONS_00072853-exon-scaffold_86-1491911889:300809..301354 | TCONS_00072853-exon-scaffold_86-1491911889:300809..301354 | Clytia hemisphaerica | exon |
TCONS_00072853-exon-scaffold_86-1510915933:300809..301354 | TCONS_00072853-exon-scaffold_86-1510915933:300809..301354 | Clytia hemisphaerica | exon |
TCONS_00072853-exon-scaffold_86-1575043694:300809..301354 | TCONS_00072853-exon-scaffold_86-1575043694:300809..301354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:299831..301354 + |
Blast
BLAST of TCONS_00072853 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 4.715e-24 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 331 STTVIHHFSDISINIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPNDYNVIFSGDMNLRDYEVQNLGGLP 561
ST ++ + + +N+ + ++TSHLES + R NQLK L+KM ++P VIF+GD NLRD EV GGLP
Sbjct: 201 STKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLP 277 HSP 2 Score: 59.6918 bits (143), Expect = 4.715e-24 Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 3
Query: 561 SHITDAWEAMGKNPATEYTFDLELNNNKYLPDNPQKRFDRMYYK-RTESIAVQCVGFELVGLERLPCGMFTSDHFGM 788
++I D WE +GK +YT+D ++N+N + + RFDR++++ E + +L+GLE+L CG F SDH+G+
Sbjct: 278 NNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGL 354
The following BLAST results are available for this feature:
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