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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007207 ID=TCONS_00007207|Name=TCONS_00007207|organism=Clytia hemisphaerica|type=transcript|length=1448bpRun BLAST on NCBI transcript from alignment at sc0000074:634006..643508- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007207 ID=TCONS_00007207|Name=TCONS_00007207|organism=Clytia hemisphaerica|type=transcript|length=9503bp|location=Sequence derived from alignment at sc0000074:634006..643508- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007207 vs. Swiss-Prot (Human)
Match: CC112 (Coiled-coil domain-containing protein 112 OS=Homo sapiens GN=CCDC112 PE=1 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 2.325e-42 Identity = 148/436 (33.94%), Postives = 252/436 (57.80%), Query Frame = 2
Query: 14 LEEMENKYNSQRKIERETLKDNLSKTGIKLERFKRDKLPAQKSPANXXXXXXXXXXXXADIMQMKEKQKLIYEDLMMEEKSLSIEIESCNKKFDNWS--NKTLPIPQSAIKKKNEEGK--DERLPEEVILFEKFVQVTNGHQGGWDDIDHQLFVKLQKQYKKPSQFMEKALESIPTHTENEIKQHVEWYQQYTVLNEKKREAIRKWKKNKTNRKDDML---SNSDTTLGXXXXXXXXXXXXXXXXXXXQERILQLQKWKAXXXXXXXXXXXXXXILKDERENLKIQKLMEEKRRLETKIQIQEYKLKRREEEDIM---QQIREDEERQKRKQLSTLXXXXXXXXXXXXMDQKKTKQLSAQVAXXXXXXXXXXXXGRINIHVERDPNRLLKPTEGWKRRQNDTENNRTKADHMIGTRG------LPHRAVPSWRQGI 1273
LEE+ENK RK ER ++ L+K +++ + + +P +EKL+ +MEEIE I KE+Q+LIYE+L+ EEK+ + E+ + ++K D W+ N AI K K LPEEV+ FEKF+Q T G QG WDD DHQ FVK++ ++K FME+ LE +P T++E++QH +WYQ++ L E+K+E+I+ WK K +++++ +D T ++ ++ + +R++Q+ L ++ WK K+ E MK ++ E E + + E +R+ + K+ ++ Y +++E+E+ + ++IRE E+ ++++ + E R +ER+ ++ K + + + + +K+ RL KLK ++ +V RDP+RL KPT+GW+ RTK IG G +PHRA+P+WRQGI
Sbjct: 23 LEELENKLIHSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEKAFRAISSKVPVDKVTPSTLPEEVLDFEKFLQQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLPGKTQDEVQQHEKWYQKFLALEERKKESIQIWKTKKQQKREEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQK--LAVEAWKKQKSIEMSMKCASQL---KEEEEKEKKHQKERQRQFKLKLLLESYTQQKKEQEEFLRLEKEIREKAEKAEKRKNAADEISRFQERDLHKLELKILDRQAKEDEKSQKQRRLAKLKEKVENNVSRDPSRLYKPTKGWE--------ERTKK---IGPTGSGPLLHIPHRAIPTWRQGI 442 The following BLAST results are available for this feature:
BLAST of TCONS_00007207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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