TCONS_00072634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072634
Unique NameTCONS_00072634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072634 ID=TCONS_00072634|Name=TCONS_00072634|organism=Clytia hemisphaerica|type=transcript|length=751bp
GTCTAAAAAATGTACAGAATCAAACCTCAATGATTGGCGAAACAcagtca
aataaaaaagatggaaTTCCTAGCAATATGGTGTTTGTCGATGATAGTCT
GTTTCTTTGGATGTGAGGCCGCTGATAATCAAGGGAAACAATATGCAAGT
CTATCTTTCACTGAACAGCCCTCTGACCTAACTTTTCTCAACACCATTGA
TGCCTCGATTACCTGTAAAAGTTCTGGTGAACTTTCACCTAAAATCACCT
GGTTAACAGAGTCAGGTTCCGCTGTCACAGATATCCCGGAACTCCGTACA
GTGTCTAATGACCGGCTTATTTTTCACCATTTCCGAGCGGAAAGATATGA
TGCCCGGATTCATGTCACAAAGTATAGATGTAAGGTGACTAGCCTGGCTG
GTGAAATCATTAGCAGACTAGCTTCTGTCCGTGCAGaattagACATCAGG
TATTCACCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCAGCTAT
TTTCAAATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACATCAAT
GGCAAATCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTGGTTTA
AGCGATGTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTATTGAT
CTTGAATGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGTCAGCA
TAAATGTGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGTTGTAC
A
Run BLAST on NCBI

protein sequence of TCONS_00072634-protein

>TCONS_00072634-protein ID=TCONS_00072634-protein|Name=TCONS_00072634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MEFLAIWCLSMIVCFFGCEAADNQGKQYASLSFTEQPSDLTFLNTIDASI
TCKSSGELSPKITWLTESGSAVTDIPELRTVSNDRLIFHHFRAERYDARI
HVTKYRCKVTSLAGEIISRLASVRAELDIRYSPIVHHQPTNQNAPAIFKC
HLPPYKSFLKVHQWQIISPHNSNNAKILGLSDVSNGFKVLSTGELLILNV
AKSHGDYKFACVSINVLSNATMRSSPAMLY
Run BLAST on NCBI

transcript from alignment at scaffold_80:162023..165119-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072634 ID=TCONS_00072634|Name=TCONS_00072634|organism=Clytia hemisphaerica|type=transcript|length=3097bp|location=Sequence derived from alignment at scaffold_80:162023..165119- (Clytia hemisphaerica)
GTCTAAAAAATGTACAGAATCAAACCTCAATGATTGGCGAAACACAGTCA
AATAAAAAAGATGGAATTCCTAGCAATATGGTGTTTGTCGATGATAGTCT
GTTTCTTTGGATGTGAGGCCGCTGATAATCAAGGTATGTTATTGTTAAGT
TTTCTTCAGGCAGAGAAATCTATTCTCTATTTGTCCACTCATAGGCTGTG
TTTTTTGTAGCGTAATTACTCTAATCTGCCATGCAATCATTGGAATGGTT
TTTGTCGGATAAAGAAATTAAATATAGATCGCGTGTTACTGTACTAAATC
AAGTCATGCATAGATTTATAAAAGCCCAAAGGGCTAGATAGAATGCTTTT
GCTGAAAATTGTGCCGAGGTTAGGTAGGAAATCCTACCTAAGTCATGTGA
CACTACAATAGAATTTAAGCGCTTGACCAATCAGAAGCCTCGCGGGCTTT
CGAAAACAATAGCAGCAATATTTTTTGCGATATTCACTTTTTTTGCTTGG
AAGAGCTTAAAGCACGCCATCTAGCCCTTCGGGCTTTATAAATCTCAGCC
CAGCCAACCGACCATTTCGTTCTAAAAGTAATTCATCGCACGCAGCGCTT
CTGCTCATTTTCATCTTGCGTTACTGACTATCTAAGCTTCTTTCTGAACT
CCTGAGTATAAATTCGGCCATCCGGCATCACCGTCAAATATTTAACGCTA
TCCAGTTTTATTCTGACTCAGTTGAGATTTCCTCAACACGCTTCTGGGAT
TATATTCTTTTAACTTCTTAACTGAATGATCCACAGAACTAATTATTTAG
AACCATACCTTACCTAAGAAGTAAACTTTATTTCCGGTAATATTGATATG
GCTGAAACAACCAGGATTTCCGCCATTGATTATATTTCTCTCTCGTTTTA
TTATAGAATACCGGACTTATTTTTTATCCAGGTTTTTAGGTTTCAAAAAA
TTTTAAACTTGATATTCAGCAGTAGTTAGAGAAAGAAAGTTTATATCAAA
TTTATGGTAAAAAATAGCATGAAGGAAAATAGTAAGGCTAGATTTTTTTC
TAGTCCTTAACCCTTTGAGTGCCAGGGTCCTTTTTTCTAAGTTTTTTTTA
AAAAATCGCTAGTTCAAACTTTAAGGGCTTATATCTCCTGATCTAGAAGG
AATTAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTC
CTATATAGCCCATGTCGTATATATACGACATCGGCACTTAAAGGGTTAAC
AATTTTTGCCTTGGGAAATTATTATTAAACGTTTTACTACTTTCCCCAAC
GATTCTTGCTCTTTCAAGTTATATTTAACTATTTTCTGATGAAGTCAATG
TATTTTTTTAGGGAAACAATATGCAAGTCTATCTTTCACTGAACAGCCCT
CTGACCTAACTTTTCTCAACACCATTGATGCCTCGATTACCTGTAAAAGT
TCTGGTGAACTTTCACCTAAAATCACCTGGTTAACAGAGTCAGGTTCCGC
TGTCACAGATATCCCGGAACTCCGTACAGTGTCTAATGACCGGCTTATTT
TTCACCATTTCCGAGCGGAAAGATATGATGCCCGGATTCATGTCACAAAG
TATAGATGTAAGGTGACTAGCCTGGCTGGTGAAATCATTAGCAGACTAGC
TTCTGTCCGTGCAGGTACTTAGCATATTTTTTTTTGCAAAAGATTTGGAT
AAAAGTTTTCTCAATCTACATACCTCTTTTTTTGAGAGATTGCTCCTGTT
TCTTCAGGTTTTGATTCCTTCCCTTGCTGTGATATATTTTCACCATCCAT
ACATTATTCAAGTACATTTGCTTTATTAATACTATGTTATATAGTGCAGC
TACGGATCGCAAGGTTGTGGGTTCAACCCCCCAGCCGGGTCATACCAAAG
ATTCTTCTCTGCTTAATGCTCAGCAATTAAGAGAAGGATCAAGGGTAAAT
GGAGCAATCCAGGGAGAAAGAGTGGCGTCCTCCCCTACCTTCGGGTAGAT
AGCTATCGAAAGAGGAGCCTTTGGGTTGCCTCCGACTGCGTTCGCAGACT
CATTTACTATATATAGTCCGCCCATGTTCATTTGGATGCTCAAAGATAAC
GGAAATGAAAGTGATAGCTGACGGACACAACAAACATTCCTTAACCAGCT
TTTATAGTAATGAATTCTTTTTATTTTTTTAGAATTAGACATCAGGTATT
CACCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCAGCTATTTTC
AAATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACATCAATGGCA
AATCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTGGTTTAAGCG
ATGTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTATTGATCTTG
AATGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGTCAGCATAAA
TGTGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGTTGTACA

Coding sequence (CDS) from alignment at scaffold_80:162023..165119-

>TCONS_00072634 ID=TCONS_00072634|Name=TCONS_00072634|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_80:162023..165119- (Clytia hemisphaerica)
AATTAGACATCAGGTATTCACCGATCGTCCATCACCAACCGACCAATCAA
AATGCTCCAGCTATTTTCAAATGTCATCTCCCACCATACAAATCATTCCT
CAAAGTACATCAATGGCAAATCATCTCTCCACATAACTCCAACAATGCTA
AAATTCTTGGTTTAAGCGATGTATCCAATGGCTTCAAAGTTCTTTCGACT
GGAGAGTTATTGATCTTGAATGTCGCTAAAAGTCATGGTGATTATAAATT
TGCATGTGTCAGCATAAATGTGTTGAGTAATGCAACAATGAGAAGCTCCC
CAGCTATGTTGTACGGAAACAATATGCAAGTCTATCTTTCACTGAACAGC
CCTCTGACCTAACTTTTCTCAACACCATTGATGCCTCGATTACCTGTAAA
AGTTCTGGTGAACTTTCACCTAAAATCACCTGGTTAACAGAGTCAGGTTC
CGCTGTCACAGATATCCCGGAACTCCGTACAGTGTCTAATGACCGGCTTA
TTTTTCACCATTTCCGAGCGGAAAGATATGATGCCCGGATTCATGTCACA
AAGTATAGATGTAAGGTGACTAGCCTGGCTGGTGAAATCATTAGCAGACT
AGCTTCTGTCCGTGCAGATGGAATTCCTAGCAATATGGTGTTTGTCGATG
ATAGTCTGTTTCTTTGGATGTGAGGCCGCTGATAATCAAGAATTAGACAT
CAGGTATTCACCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCAG
CTATTTTCAAATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACAT
CAATGGCAAATCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTGG
TTTAAGCGATGTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTAT
TGATCTTGAATGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGTC
AGCATAAATGTGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGTT
GTACGGAAACAATATGCAAGTCTATCTTTCACTGAACAGCCCTCTGACCT
AACTTTTCTCAACACCATTGATGCCTCGATTACCTGTAAAAGTTCTGGTG
AACTTTCACCTAAAATCACCTGGTTAACAGAGTCAGGTTCCGCTGTCACA
GATATCCCGGAACTCCGTACAGTGTCTAATGACCGGCTTATTTTTCACCA
TTTCCGAGCGGAAAGATATGATGCCCGGATTCATGTCACAAAGTATAGAT
GTAAGGTGACTAGCCTGGCTGGTGAAATCATTAGCAGACTAGCTTCTGTC
CGTGCAGATGGAATTCCTAGCAATATGGTGTTTGTCGATGATAGTCTGTT
TCTTTGGATGTGAGGCCGCTGATAATCAAGAATTAGACATCAGGTATTCA
CCGATCGTCCATCACCAACCGACCAATCAAAATGCTCCAGCTATTTTCAA
ATGTCATCTCCCACCATACAAATCATTCCTCAAAGTACATCAATGGCAAA
TCATCTCTCCACATAACTCCAACAATGCTAAAATTCTTGGTTTAAGCGAT
GTATCCAATGGCTTCAAAGTTCTTTCGACTGGAGAGTTATTGATCTTGAA
TGTCGCTAAAAGTCATGGTGATTATAAATTTGCATGTGTCAGCATAAATG
TGTTGAGTAATGCAACAATGAGAAGCTCCCCAGCTATGTTGTACGGAAAC
AATATGCAAGTCTATCTTTCACTGAACAGCCCTCTGACCTAACTTTTCTC
AACACCATTGATGCCTCGATTACCTGTAAAAGTTCTGGTGAACTTTCACC
TAAAATCACCTGGTTAACAGAGTCAGGTTCCGCTGTCACAGATATCCCGG
AACTCCGTACAGTGTCTAATGACCGGCTTATTTTTCACCATTTCCGAGCG
GAAAGATATGATGCCCGGATTCATGTCACAAAGTATAGATGTAAGGTGAC
TAGCCTGGCTGGTGAAATCATTAGCAGACTAGCTTCTGTCCGTGCAGATG
GAATTCCTAGCAATATGGTGTTTGTCGATGATAGTCTGTTTCTTTGGATG
TGAGGCCGCTGATAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045084XLOC_045084Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072634-proteinTCONS_00072634-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072634-exon-scaffold_80-1575043694:164987..165119TCONS_00072634-exon-scaffold_80-1575043694:164987..165119Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1575043694:162856..163158TCONS_00072634-exon-scaffold_80-1575043694:162856..163158Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1575043694:162023..162337TCONS_00072634-exon-scaffold_80-1575043694:162023..162337Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1510915933:164987..165119TCONS_00072634-exon-scaffold_80-1510915933:164987..165119Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1510915933:162856..163158TCONS_00072634-exon-scaffold_80-1510915933:162856..163158Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1510915933:162023..162337TCONS_00072634-exon-scaffold_80-1510915933:162023..162337Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1491911889:164987..165119TCONS_00072634-exon-scaffold_80-1491911889:164987..165119Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1491911889:162856..163158TCONS_00072634-exon-scaffold_80-1491911889:162856..163158Clytia hemisphaericaexon
TCONS_00072634-exon-scaffold_80-1491911889:162023..162337TCONS_00072634-exon-scaffold_80-1491911889:162023..162337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:162023..165119 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0654571	0	0.148228	0.0725089	10.3499	8.33292	15.4846	14.8148	3.64052	5.7392	3.52102	4.75175	4.91928	4.80074	0.743374	1.19663	1.30447	1.6713	7.08093	10.1938	2.80015	3.2413	0.332066	0.603792	2.95399	4.26508	1.07706	0.862097	1.76797	1.63753
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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