TCONS_00007222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007222
Unique NameTCONS_00007222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007222 ID=TCONS_00007222|Name=TCONS_00007222|organism=Clytia hemisphaerica|type=transcript|length=500bp
CCCTCAAAAAGTATTAAAAGAGCAAAACCGAAAGTTCAATTTGGGGAAtg
gtcaattttttaatgatcCGATCCAAGCCGCTGACCAACTTCTTGCACGG
GAATACAGTGATTCAGCACTCTTCGATTCTACTCTCCACGAACCGGTTTT
TATACCACCAGTCTTTCAATCAATCCAATACACGAAAACGGATTCATCGG
TGCACATTCTTGATTATGAAGAGATCAAAAAAACCTCAATAAAGAAATCG
CTGGACAATCTACAAACGAACGAGCCTAACCATTGGTTTACCAAGGAAGT
ACAAGGTTTCTACGATCTCCAACTTGAAAACCATGGTGATGAAGTCAAAC
CAGTAGAATTTTGCCAATGGATTCTCAATAGCAAAATCATGTATTTATTG
ATCGAAGAAATAGGAACAGACCAAGTGAATCTTCCGCAAACGACTTCTGA
CAACCAGACGTTTAAAGAAGCATGTATGCAAGAGCTGTCAGATAATCAAA
Run BLAST on NCBI

protein sequence of TCONS_00007222-protein

>TCONS_00007222-protein ID=TCONS_00007222-protein|Name=TCONS_00007222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
PQKVLKEQNRKFNLGNGQFFNDPIQAADQLLAREYSDSALFDSTLHEPVF
IPPVFQSIQYTKTDSSVHILDYEEIKKTSIKKSLDNLQTNEPNHWFTKEV
QGFYDLQLENHGDEVKPVEFCQWILNSKIMYLLIEEIGTDQVNLPQTTSD
NQTFKEACMQELSDNQ
Run BLAST on NCBI

transcript from alignment at sc0000074:274174..274673

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007222 ID=TCONS_00007222|Name=TCONS_00007222|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at sc0000074:274174..274673 (Clytia hemisphaerica)
TTTGATTATCTGACAGCTCTTGCATACATGCTTCTTTAAACGTCTGGTTG
TCAGAAGTCGTTTGCGGAAGATTCACTTGGTCTGTTCCTATTTCTTCGAT
CAATAAATACATGATTTTGCTATTGAGAATCCATTGGCAAAATTCTACTG
GTTTGACTTCATCACCATGGTTTTCAAGTTGGAGATCGTAGAAACCTTGT
ACTTCCTTGGTAAACCAATGGTTAGGCTCGTTCGTTTGTAGATTGTCCAG
CGATTTCTTTATTGAGGTTTTTTTGATCTCTTCATAATCAAGAATGTGCA
CCGATGAATCCGTTTTCGTGTATTGGATTGATTGAAAGACTGGTGGTATA
AAAACCGGTTCGTGGAGAGTAGAATCGAAGAGTGCTGAATCACTGTATTC
CCGTGCAAGAAGTTGGTCAGCGGCTTGGATCGgatcattaaaaaattgac
caTTCCCCAAATTGAACTTTCGGTTTTGCTCTTTTAATACTTTTTGAGGG

Coding sequence (CDS) from alignment at sc0000074:274174..274673

>TCONS_00007222 ID=TCONS_00007222|Name=TCONS_00007222|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000074:274174..274673 (Clytia hemisphaerica)
TTGATTATCTGACAGCTCTTGCATACATGCTTCTTTAAACGTCTGGTTGT
CAGAAGTCGTTTGCGGAAGATTCACTTGGTCTGTTCCTATTTCTTCGATC
AATAAATACATGATTTTGCTATTGAGAATCCATTGGCAAAATTCTACTGG
TTTGACTTCATCACCATGGTTTTCAAGTTGGAGATCGTAGAAACCTTGTA
CTTCCTTGGTAAACCAATGGTTAGGCTCGTTCGTTTGTAGATTGTCCAGC
GATTTCTTTATTGAGGTTTTTTTGATCTCTTCATAATCAAGAATGTGCAC
CGATGAATCCGTTTTCGTGTATTGGATTGATTGAAAGACTGGTGGTATAA
AAACCGGTTCGTGGAGAGTAGAATCGAAGAGTGCTGAATCACTGTATTCC
CGTGCAAGAAGTTGGTCAGCGGCTTGGATCGgatcattaaaaaattgacc
aTTCCCCAAATTGAACTTTCGGTTTTGCTCTTTTAATACTTTTTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004053XLOC_004053Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007222-proteinTCONS_00007222-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007222-exon-sc0000074-1491911889:274174..274673TCONS_00007222-exon-sc0000074-1491911889:274174..274673Clytia hemisphaericaexon
TCONS_00007222-exon-sc0000074-1510915933:274174..274673TCONS_00007222-exon-sc0000074-1510915933:274174..274673Clytia hemisphaericaexon
TCONS_00007222-exon-sc0000074-1575043694:274174..274673TCONS_00007222-exon-sc0000074-1575043694:274174..274673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:274174..274673 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36575	0.118888	0.414121	0.675254	0	0	0.313486	0.440223	0.513684	0.636281	0.864625	0.0811958	1.54058	0.0842054	1.73071	3.86321	0.823701	1.12569	0.907201	0.813703	0.235752	0	0.279574	0	0.523586	0.350466	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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