TCONS_00072332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072332
Unique NameTCONS_00072332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072332 ID=TCONS_00072332|Name=TCONS_00072332|organism=Clytia hemisphaerica|type=transcript|length=844bp
AGAAGATTGATCTCGAGAAGGGGCAATGTGAGAGTTCTTCGTTCCGACCG
AGGTACGAATTTTGTCGGAGCCGACAACGAATTGCAAGCCTTATTCAGTC
AAATGGACCACGATCGAATTCAATCGTTTATGCAAATCAACGGAGGAGAT
TGGCTCGTCTGGAAATTTAACCCACCAAAATCAAGCCACATGGGTGGAGT
CTGGGAAAGACAAATCCGCAGCGTACGTTCCATCTTATGCAACCTCATGG
ATCATCATGGAGATTGTGTTGACGATGAATCGTTTAGGACCTTCCTCTGT
GAAGCTGAATGTACTGTCAACTCGAGACCGTTAACCTACGACAGCATTGG
AGATCCACAGAGTCCAATCCCAATCAGCCCAATCACTTTGTTGACTGGAA
AAAGCCAGCTCGTACTACCTCCTCCAGGGAATTTCACCTCGAGCACCACT
ATGTACTGCAGACAGAGATGGAGACGAGTTCAACATCTAGCGAACGAATT
CTGGACACGCTGGCGCAAAGAATATCTCAACACCCTCCAAGAACGACGCA
AATGGCCATCAACCAGACGAAATCTGAGTATCGGTGATGTAGTCTTGTTG
AAAGATGGCGATCTCTTCCGTAATAACTGGAACATGGGAATCGTTCGGTC
GACAAAACAAAGCGCTGACGGTCTTGTTCGTTCTTGTACGTTGAAAACGA
GATCAGGAATATTTGAGCGACCGATTCACAAATTAGTTCTATTACTTGAA
TCCGAGTAGAAAGGTCCGATCCCAGCCGTGGGAGCCTTACTGATTGAAAT
GTTCGGAAAAAGATTGTGTTTATCTTTTTGGAGAGCCATGTTAT
Run BLAST on NCBI

protein sequence of TCONS_00072332-protein

>TCONS_00072332-protein ID=TCONS_00072332-protein|Name=TCONS_00072332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
RRLISRRGNVRVLRSDRGTNFVGADNELQALFSQMDHDRIQSFMQINGGD
WLVWKFNPPKSSHMGGVWERQIRSVRSILCNLMDHHGDCVDDESFRTFLC
EAECTVNSRPLTYDSIGDPQSPIPISPITLLTGKSQLVLPPPGNFTSSTT
MYCRQRWRRVQHLANEFWTRWRKEYLNTLQERRKWPSTRRNLSIGDVVLL
KDGDLFRNNWNMGIVRSTKQSADGLVRSCTLKTRSGIFERPIHKLVLLLE
SE
Run BLAST on NCBI

transcript from alignment at scaffold_76:32672..33515

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072332 ID=TCONS_00072332|Name=TCONS_00072332|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_76:32672..33515 (Clytia hemisphaerica)
ATAACATGGCTCTCCAAAAAGATAAACACAATCTTTTTCCGAACATTTCA ATCAGTAAGGCTCCCACGGCTGGGATCGGACCTTTCTACTCGGATTCAAG TAATAGAACTAATTTGTGAATCGGTCGCTCAAATATTCCTGATCTCGTTT TCAACGTACAAGAACGAACAAGACCGTCAGCGCTTTGTTTTGTCGACCGA ACGATTCCCATGTTCCAGTTATTACGGAAGAGATCGCCATCTTTCAACAA GACTACATCACCGATACTCAGATTTCGTCTGGTTGATGGCCATTTGCGTC GTTCTTGGAGGGTGTTGAGATATTCTTTGCGCCAGCGTGTCCAGAATTCG TTCGCTAGATGTTGAACTCGTCTCCATCTCTGTCTGCAGTACATAGTGGT GCTCGAGGTGAAATTCCCTGGAGGAGGTAGTACGAGCTGGCTTTTTCCAG TCAACAAAGTGATTGGGCTGATTGGGATTGGACTCTGTGGATCTCCAATG CTGTCGTAGGTTAACGGTCTCGAGTTGACAGTACATTCAGCTTCACAGAG GAAGGTCCTAAACGATTCATCGTCAACACAATCTCCATGATGATCCATGA GGTTGCATAAGATGGAACGTACGCTGCGGATTTGTCTTTCCCAGACTCCA CCCATGTGGCTTGATTTTGGTGGGTTAAATTTCCAGACGAGCCAATCTCC TCCGTTGATTTGCATAAACGATTGAATTCGATCGTGGTCCATTTGACTGA ATAAGGCTTGCAATTCGTTGTCGGCTCCGACAAAATTCGTACCTCGGTCG GAACGAAGAACTCTCACATTGCCCCTTCTCGAGATCAATCTTCT

Coding sequence (CDS) from alignment at scaffold_76:32672..33515

>TCONS_00072332 ID=TCONS_00072332|Name=TCONS_00072332|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_76:32672..33515 (Clytia hemisphaerica)
CTACTCGGATTCAAGTAATAGAACTAATTTGTGAATCGGTCGCTCAAATA
TTCCTGATCTCGTTTTCAACGTACAAGAACGAACAAGACCGTCAGCGCTT
TGTTTTGTCGACCGAACGATTCCCATGTTCCAGTTATTACGGAAGAGATC
GCCATCTTTCAACAAGACTACATCACCGATACTCAGATTTCGTCTGGTTG
ATGGCCATTTGCGTCGTTCTTGGAGGGTGTTGAGATATTCTTTGCGCCAG
CGTGTCCAGAATTCGTTCGCTAGATGTTGAACTCGTCTCCATCTCTGTCT
GCAGTACATAGTGGTGCTCGAGGTGAAATTCCCTGGAGGAGGTAGTACGA
GCTGGCTTTTTCCAGTCAACAAAGTGATTGGGCTGATTGGGATTGGACTC
TGTGGATCTCCAATGCTGTCGTAGGTTAACGGTCTCGAGTTGACAGTACA
TTCAGCTTCACAGAGGAAGGTCCTAAACGATTCATCGTCAACACAATCTC
CATGATGATCCATGAGGTTGCATAAGATGGAACGTACGCTGCGGATTTGT
CTTTCCCAGACTCCACCCATGTGGCTTGATTTTGGTGGGTTAAATTTCCA
GACGAGCCAATCTCCTCCGTTGATTTGCATAAACGATTGAATTCGATCGT
GGTCCATTTGACTGAATAAGGCTTGCAATTCGTTGTCGGCTCCGACAAAA
TTCGTACCTCGGTCGGAACGAAGAACTCTCACATTGCCCCTTCTCGAGAT
CAATCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044912XLOC_044912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072332-exon-scaffold_76-1491911889:32672..33515TCONS_00072332-exon-scaffold_76-1491911889:32672..33515Clytia hemisphaericaexon
TCONS_00072332-exon-scaffold_76-1510915933:32672..33515TCONS_00072332-exon-scaffold_76-1510915933:32672..33515Clytia hemisphaericaexon
TCONS_00072332-exon-scaffold_76-1575043694:32672..33515TCONS_00072332-exon-scaffold_76-1575043694:32672..33515Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072332-proteinTCONS_00072332-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:32672..33515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167611 0.163448 0 0 0.452067 0.0595382 0.359151 0.268987 0.282486 1.39962 0 0.818607 0.148631 0.115766 0 0 0 0 0 0 0 0 0 0 0.179957 0.535358 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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