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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072296 ID=TCONS_00072296|Name=TCONS_00072296|organism=Clytia hemisphaerica|type=transcript|length=2384bp
NNTCAATCCCCAGTCGGGACATaaaaagattcccaaaatggtacttgatg
ccgcTCTGCTTGAttctcagcaattaagagaaagatcaagggtaagtgga
gcaatttAGGGAAAAAGGTGGCATCCTCCCCTACCTCCGACTGCAGTCCC
AGGATTACTTATACTTACATATAAGCATTATGCTTACCATCTTTTGGTAC
TACTGCCGTTTGGGGTAACTTTCATAAGGCTTGAGGTGATTATCATCATC
AGCATCATCATCAGACAAACAGAGTAATAAAACAATGATGTGCCCAAAAA
AGTTTTGTAGATAACGATTTTTCAATCCTTGGTCACCCATTTGTAACTAT
CATACTCCAATCAAAGAGATTAGAGTCCTCAAAATGCAATAAAGACATCA
TGTGGCCATTTTGTCTCTTGCGATGGACTATTTAAAGTTGATTATATTTA
AATAATGATCGCTAAATTTATTGTCTTTACAAATTCTATATATTGGCAGT
AAAACTGACGTGGACCTAAATCTAAAGAATCAAGAGTGTAAAATCAGTGG
TTAGCAGAGGTGTAATGCAAAGTATCAAGCAAAATGTGATGTTTTAATCT
ATGAAAGGTTTGCATATATAGTCCAACATGTCCCTGAGGAGCTTTATTTA
TATACAATCACGacttaaacaaaacaaaacaaaacattcacaGATAATGT
AATCtaattaagagaaggatttATTTCTTTGCCATCCCTCTCTATTCCCT
TTAAAAGGCTAAACCAAAGATACTTATGTAATGACCCGTTTTACTTTGAA
AACCTTCTCAAAGGTATTCTTTTCTAATTTAGCATTATGGTTTAACCAAA
TTTATCCGACAATCAATCCAAAAATGTTAGAAGCAAAGTATTTTACTTTT
GAACACTTTCAAAAGGTATTATAAAGTAATGAAGGAAGCAGAGTAGTATA
CCATACGTACGATATTCATAAAACTTGAACAACCTGAACAGTACCTCAAA
GACAtgcaatcttcttttttttttgaatttttaaagactCGGCCTcgaaa
aagattcaaatttacattaaaggaagaaacggCAATAGACACCAAAGGCA
GATGGATAAATTGAAAAGAATGAATGGAAAGCAAGCGAATGCAATAAATA
ATAGAACAGCTAGGTGAAAGACACTCTAATTTGACGGTAGACGCCTCACT
TTTTTCTATTACCTTTCATGCAGGTGATACCATATTGCAAGAATTCCTGG
TTTGTTTTGCATTGCCGAAAAAGTCACCCTCTTCAACGGAGAATCTGTTG
TACTGAAAACAAATAAGCCAGAGAGTTTTGGTCTTCATAGCTTAGCCGTC
CTCAGTCACGAACATCGTCTCCTAAAGTTAGATAGAAATCACGCAAATGT
GGTTTCGGCATTTAGTTTGGTCCCCACAAACGGGATATTTGCTCATGTTA
TGAAATTTGAGTATAGCACAAGTCTATTTGAAATGTCACTAAAAtctatt
ttcatattttctatttcaaatttcaagtcGATCATCGAGGGAGTTGCCGA
CGGActtaactttttgttaactttttcattcataaCCATCTTATTACAGA
CAACATTATTGTTATTAATAGTTCCCCTAGAATAGTTGGGTTTACGTTTC
CACCAAAAACAATATATACAAGATGTcttaaaaaagtttcaaggttcAAA
TCATTTGGCTACCGAATTATTCAACGGGTCTTGTGCTACATATTCGACCG
ATGTTTATGTATTTGGGGTACAGAGCATCTTAAAGATGAGATTCGGCTTT
TCAATGAACATAAACTTCAAGTCCAAAGTTGACTGTTATGCTGACAGCTT
ACGGCAGACCTAAGGCTATCGCGCAAGTTTCtggattaaaaaacaaaacg
cATGCTATATTACAAGATATGATTTTTAGATTAGATAATATTTAACATTA
TGCATTTTCTGTTTCCTCTTAAGGCTAAGTATTTAATCCATCATTCATGC
ATAACTCAAAAAATTCCTtgaattcaaataaattttttttttactttttc
aagcAGTTTCAAGAACCCTGCTGTTTTATCGATTGAACTGGTATTATTAT
TAGAAACAATGCCAatttatataaaagaaacaattaaTATATTTCAAATA
GTAATAGTTATCGTTACATACGTGCATTGGAAAAAAGTTATTAGGAAACA
ATCCGAATCGTCAGCCGGAACAAGTTGGAGTTTTGCAAATTTCTGTGATA
ACGTCATATGGACGAGACGAGTCGAGAGAGTTACTAGTTATCCTTAGTCA
AATAAAGAGGTGATTGCTTATTCAGTGAACAGAAATAATTGCTTCCTTGG
CACTCGATGAATATGGCTATACCTGAGTATCCNN Run BLAST on NCBI transcript from alignment at scaffold_75:2159..5292- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072296 ID=TCONS_00072296|Name=TCONS_00072296|organism=Clytia hemisphaerica|type=transcript|length=3134bp|location=Sequence derived from alignment at scaffold_75:2159..5292- (Clytia hemisphaerica)
NNTCAATCCCCAGTCGGGACATAAAAAGATTCCCAAAATGGTACTTGATG
CCGCTCTGCTTGATTCTCAGCAATTAAGAGAAAGATCAAGGGTAAGTGGA
GCAATTTAGGGAAAAAGGTGGCATCCTCCCCTACCTCCGACTGCAGTCCC
AGGATTACTTATACTTACATATAAGCATTATGCTTACCATCTTTTGGTAC
TACTGCCGTTTGGGGTAACTTTCATAAGGCTTGAGGTGATTATCATCATC
AGCATCATCATCAGACAAACAGAGTAATAAAACAATGATGTGCCCAAAAA
AGTTTTGTAGATAACGATTTTTCAATCCTTGGTCACCCATTTGTAACTAT
CATACTCCAATCAAAGAGATTAGAGTCCTCAAAATGCAATAAAGACATCA
TGTGGCCATTTTGTCTCTTGCGATGGACTATTTAAAGTTGATTATATTTA
AATAATGATCGCTAAATTTATTGTCTTTACAAATTCTATATATTGGCAGT
AAAACTGACGTGGACCTAAATCTAAAGAATCAAGAGTGTAAAATCAGTGG
TTAGCAGAGGTGTAATGCAAAGTATCAAGCAAAATGTGATGTTTTAATCT
ATGAAAGGTTTGCATATATAGTCCAACATGTCCCTGAGGAGCTTTATTTA
TATACAATCACGACTTAAACAAAACAAAACAAAACATTCACAGATAATGT
AATCTAATTAAGAGAAGGATTTATTTCTTTGCCATCCCTCTCTATTCCCT
TTAAAAGGCTAAACCAAAGATACTTATGTAATGACCCGTTTTACTTTGAA
AACCTTCTCAAAGGTATTCTTTTCTAATTTAGCATTATGGTTTAACCAAA
TTTATCCGACAATCAATCCAAAAATGTTAGAAGCAAAGTATTTTACTTTT
GAACACTTTCAAAAGGTATTATAAAGTAATGAAGGAAGCAGAGTAGTATA
CCATACGTACGATATTCATAAAACTTGAACAACCTGAACAGTACCTCAAA
GACATGCAATCTTCTTTTTTTTTTGAATTTTTAAAGACTCGGCCTCGAAA
AAGATTCAAATTTACATTAAAGGAAGAAACGGCAATAGACACCAAAGGCA
GATGGATAAATTGAAAAGAATGAATGGAAAGCAAGCGAATGCAATAAATA
ATAGAACAGCTAGGTGAAAGACACTCTAATTTGACGGTAGACGCCTCACT
TTTTTCTATTACCTTTCATGCAGGTGATACCATATTGCAAGAATTCCTGG
TTTGTTTTGCATTGCCGAAAAAGTCACCCTCTTCAACGGAGAATCTGTTG
TACTGAAAACAAATAAGCCAGAGAGTTTTGGTCTTCATAGCTTAGCCGTC
CTCAGTCACGAACATCGTCTCCTAAAGTTAGATAGAAATCACGCAAATGT
GGTTTCGGCATTTAGTTTGGTCCCCACAAACGGGATATTTGCTCATGTTA
TGAAATTTGAGTATAGCACAAGTCTATTTGAAATGTCACTAAAATCTATT
TTCATATTTTCTATTTCAAATTTCAAGTCGATCATCGAGGGAGTTGCCGA
CGGACTTAACTTTTTGTTAACTTTTTCATTCATAACCATCTTATTACAGA
CAACATTATTGTTATTAATAGTTCCCCTAGAATAGTTGGGTTTACGTTTC
CACCAAAAACAATATATACAAGATGTCTTAAAAAAGTTTCAAGGTTCAAA
TCATTTGGCTACCGAATTATTCAACGGGTCTTGTGCTACATATTCGACCG
ATGTTTATGTATTTGGGGTACAGAGCATCTTAAAGATGAGATTCGGCTTT
TCAATGAACATAAACTTCAAGTCCAAAGTTGACTGTTATGCTGACAGCTT
ACGGCAGACCTAAGGCTATCGCGCAAGTTTCTGGATTAAAAAACAAAACG
CATGCTATATTACAAGATATGATTTTTAGATTAGATAATATTTAACATTA
TGCATTTTCTGTTTCCTCTTAAGGCTAAGTATTTAATCCATCATTCATGC
ATAACTCAAAAAATTCCTTGAATTCAAATAAATTTTTTTTTTACTTTTTC
AAGCAGTTTCAAGAACCCTGCTGTTTTATCGATTGAACTGGTATTATTAT
TAGAAACAATGCCAATTTATATAAAAGAAACAATTAATATATTTCAAATA
GTAATAGTTATCGTTACATACGGTACATTGTTTTTTAAATATATTTTTCG
AGTTTGGACGTTCGTCTTATTCTCCGAGTCTTTAGGAGAGATTTAGGCCT
TCTTTTTGCCAATCAAATTGCTAACTTTTTTTCATGTTTGCAATAAATTC
AGGTAGTTAGTCTGATTCAGTTCATAGAGAACAATAGTTTCTCATTTTTC
GAAATGGCCTAAATGTTGCTTTATTTAATTCATGTGAATTTTCTTATTAT
GAACATTATAAAATCCAAGCCGATTTTTAGGCTTTGAGGAAATTTAACCA
TTGTGTAACCATTTGGATTTGGGCCATTTGAAGTAAACTTTTCGTTATCA
AAGGATTTGGAAAAGATTTTCTCAAAAATTTAAGTGTCTGTAAAATCTGT
GAAATTTTTTCGATTTTTAATTCTCTCTCTTTAGTGCATTGGAAAAAAGT
TATTAGGAAACAATCCGAATCGTCAGCCGGAACAAGTTGGAGTTTTGCAA
ATTTCTGTGATAACGTCATATGGACGAGACGAGTCGAGAGAGTTACTAGT
TATCCTTAGTCAAATAAAGAGGTGTGTATTTCATAATCTTGGATTAATTA
CCACAAGCATTTCATGTGTTATCGTGTTATTCTGTACATTTCCAATCCGA
TCGGGACAAGTTGAAGGCAAAAGGCATACCCTCAATTTGAAGAGCTTATA
TATCAACATTTGAAAAACACAATTATGTTTAATAAAAAAATAATTGAAAA
TGATCGATCTATATAGCTCTTATCAAAAATTGTGTAGTTAAGTAATTTGG
CACTCTATCGGTATTATGTCATATATTAATATCCTAATTTTAGAGAAATC
ATCCTAAACAATATAGTTCGGCAATAAAAAAAATTAATCATGACATTTTC
TTTCTACAGGTGATTGCTTATTCAGTGAACAGAAATAATTGCTTCCTTGG
CACTCGATGAATATGGCTATACCTGAGTATCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072296-exon-scaffold_75-1575043694:3121..5292 | TCONS_00072296-exon-scaffold_75-1575043694:3121..5292 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1575043694:2572..2708 | TCONS_00072296-exon-scaffold_75-1575043694:2572..2708 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1575043694:2159..2233 | TCONS_00072296-exon-scaffold_75-1575043694:2159..2233 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1510915933:3121..5292 | TCONS_00072296-exon-scaffold_75-1510915933:3121..5292 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1510915933:2572..2708 | TCONS_00072296-exon-scaffold_75-1510915933:2572..2708 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1510915933:2159..2233 | TCONS_00072296-exon-scaffold_75-1510915933:2159..2233 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1491911889:3121..5292 | TCONS_00072296-exon-scaffold_75-1491911889:3121..5292 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1491911889:2572..2708 | TCONS_00072296-exon-scaffold_75-1491911889:2572..2708 | Clytia hemisphaerica | exon |
| TCONS_00072296-exon-scaffold_75-1491911889:2159..2233 | TCONS_00072296-exon-scaffold_75-1491911889:2159..2233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_75 | supercontig | scaffold_75:2159..5292 - |
Blast
The following BLAST results are available for this feature:
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