TCONS_00072288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072288
Unique NameTCONS_00072288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072288 ID=TCONS_00072288|Name=TCONS_00072288|organism=Clytia hemisphaerica|type=transcript|length=812bp
CATTTCTATCTAATATTTACACAGTATTGACGTGCTGTTAAGGCATAAAC
CTTAGTTTTAATCCATTTTTGGTCAATCAAACACTCTCACCTTTTTCAGT
GTGCAGCCATTTTGTTTGCTTTTGTTTGGTCTGCATTTTATTTCACTTTT
CCCACCATTTTNttttgtttgtttttgtttggtcTGCATTTTATTTCACT
TTTCCCACCATTTTGGTTATTCTGCATTTTTCTGTGTTTGATAAGCATTT
GGTCAGTATTTTATTCATTCAATTTATGTCAATTTGATATGCATTTCCTT
TTGTTATAATTTATTCCAATTTTTCTCATAatttattttggtctgtaaat
tagACTTTTTGATCTGCCTATAAATGCCACATCATCACTCAGACCTCACT
TCAACAGAGACTTCAAGGAGTGAAGACCTCCTCTGACATGATgtcaactc
aaatcaaatgagatCAATCAATAGTCTCTTTAGTTACTCACATATACAAG
cacattcaattttcattttcattttcacacaGTTGGTGTTAGTCTTGACA
CACCCTGTGTTCTGCTGCCTGCTTACAGCATTCCACCTCAGGCCAGCTGG
tgagttttttgtttcttttctctgTCTCTATTTGTGGCACCTAAGTTAAG
TTAAGTTAGATTTTCTTTCACATTATATTAGTACTTCAATCATTCATTTA
TACATTTGTTGTTTTCTACTTCTACTTTTGTTCTCATAGACTTACATCCT
TTTGTACCTAAGttagattattttattttcattcattagacttagtattt
ttcaatttttat
Run BLAST on NCBI

transcript from alignment at scaffold_74:13231..14156+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072288 ID=TCONS_00072288|Name=TCONS_00072288|organism=Clytia hemisphaerica|type=transcript|length=926bp|location=Sequence derived from alignment at scaffold_74:13231..14156+ (Clytia hemisphaerica)
CATTTCTATCTAATATTTACACAGTATTGACGTGCTGTTAAGGCATAAAC CTTAGTTTTAATCCATTTTTGGTCAATCAAACACTCTCACCTTTTTCAGT GTGCAGCCATTTTGTTTGCTTTTGTTTGGTCTGCATTTTATTTCACTTTT CCCACCATTTTNttttgtttgtttttgtttggtcTGCATTTTATTTCACT TTTCCCACCATTTTGGTTATTCTGCATTTTTCTGTGTTTGATAAGCATTT GGTCAGTATTTTATTCATTCAATTTATGTCAATTTGATATGCATTTCCTT TTGTTATAATTTATTCCAATTTTTCTCATAatttattttggtctgtaaat tagACTTTTTGATCTGCCTATAAATGCCACATCATCACTCAGACCTCACT TCAACAGAGACTTCAAGGAGTGAAGACCTCCTCTGACATGATgtcaactc aaatcaaatgagatCAATCAATAGTCTCTTTAGTTACTCACATATACAAG CACattcaatcttcattttcacaCAGTTGGTGTTAGTCTTGACACACCCT GTGTTCTGCTGCCTGCTTACAGCATTCTACCTCAGGCCAGCNTTTAGTTA CTCACATATACAAGcacattcaattttcattttcattttcacacaGTTGG TGTTAGTCTTGACACACCCTGTGTTCTGCTGCCTGCTTACAGCATTCCAC CTCAGGCCAGCTGGtgagttttttgtttcttttctctgTCTCTATTTGTG GCACCTAAGTTAAGTTAAGTTAGATTTTCTTTCACATTATATTAGTACTT CAATCATTCATTTATACATTTGTTGTTTTCTACTTCTACTTTTGTTCTCA TAGACTTACATCCTTTTGTACCTAAGttagattattttattttcattcat tagacttagtatttttcaatttttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044887XLOC_044887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072288-exon-scaffold_74-1491911889:13231..13721TCONS_00072288-exon-scaffold_74-1491911889:13231..13721Clytia hemisphaericaexon
TCONS_00072288-exon-scaffold_74-1510915933:13231..13721TCONS_00072288-exon-scaffold_74-1510915933:13231..13721Clytia hemisphaericaexon
TCONS_00072288-exon-scaffold_74-1575043694:13231..13721TCONS_00072288-exon-scaffold_74-1575043694:13231..13721Clytia hemisphaericaexon
TCONS_00072288-exon-scaffold_74-1491911889:13836..14156TCONS_00072288-exon-scaffold_74-1491911889:13836..14156Clytia hemisphaericaexon
TCONS_00072288-exon-scaffold_74-1510915933:13836..14156TCONS_00072288-exon-scaffold_74-1510915933:13836..14156Clytia hemisphaericaexon
TCONS_00072288-exon-scaffold_74-1575043694:13836..14156TCONS_00072288-exon-scaffold_74-1575043694:13836..14156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_74supercontigscaffold_74:13231..14156 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.99819 0.371427 0.613975 0 0.199442 0 0 0.224979 0.613041 0 1.20962 0.690801 0.550666 0.0678992 0.942839 0.370782 0 0.255527 0.285923 0.326153 0.494698 2.05077 0.484391 0.939741 0 1.19722 0 1.36599 1.16054 2.42011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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