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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072284 ID=TCONS_00072284|Name=TCONS_00072284|organism=Clytia hemisphaerica|type=transcript|length=2836bpRun BLAST on NCBI transcript from alignment at scaffold_73:15672..24937- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072284 ID=TCONS_00072284|Name=TCONS_00072284|organism=Clytia hemisphaerica|type=transcript|length=9266bp|location=Sequence derived from alignment at scaffold_73:15672..24937- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072284 vs. Swiss-Prot (Human)
Match: ARHGA (Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10 PE=1 SV=4) HSP 1 Score: 243.047 bits (619), Expect = 3.229e-75 Identity = 146/400 (36.50%), Postives = 238/400 (59.50%), Query Frame = 1
Query: 979 NLDLEKDMYVEVNIDDEMMFPAVLPPLEDDADEFQLKRYQIVKCILENEKVYVTSLNRLINEYEMPLRKR--NIISDDRIKVIFRHVHEIIQCHQLFSMALTDRTKEWSTNDVIGDVIYASFSKSMALKAYTSFVHNFSYAMESIKETCKLVPAFLSFLKTRSSNISTYYQVFKESAKNHLNRNSTKQSLYDLMRQPLERIPQLVTLTQELTKITPLLHPDHFPLQMALTHLECFSETLAEKKRDSMYKHKVRQL-----DNYCIGLEKPLSSKNRYYVRHDDMILCIV-DEGKIVKTKLRRLFILNDLLICAGIXXXXXX-XXXXXXXXFQIKWCVPINDVQILDVGSGISFQSHKQTLTT----KYSHMSSPRP-----GVGDAPKVLEDLQHDIEVI 2124
+L+ E++++++V+ A+L P+ + + Q+ R I+ ++++EK YV +L R++ +YE PL + ++S+ ++K +F V EI+QCH LF +AL R EW + ++IGDV ASFSKSM L AY+ +V+NFS A+ +K+TC PAFL FLK +E++ + + +LY LM +P++R PQ + L Q++ K T HPD PLQMALT LE +E L E+KRD+ + +V+Q+ + Y L K LSS +RY +R DDMI + D G+IVKTK RR+F+LND+L+CA + ++P + ++S+++ +KW VP+ V ++ GS H + L + +++ +P G G + L++L HD+ VI
Sbjct: 388 SLEEEQNLFIDVDCKHPE---AILTPMPEGLSQQQVVRRYILGSVVDSEKNYVDALKRILEQYEKPLSEMEPKVLSERKLKTVFYRVKEILQCHSLFQIALASRVSEWDSVEMIGDVFVASFSKSMVLDAYSEYVNNFSTAVAVLKKTCATKPAFLEFLKQE-----------QEASPD-------RTTLYSLMMKPIQRFPQFILLLQDMLKNTSKGHPDRLPLQMALTELETLAEKLNERKRDADQRCEVKQIAKAINERY---LNKLLSSGSRYLIRSDDMIETVYNDRGEIVKTKERRVFMLNDVLMCATVSSRPSHDSRVMSSQRYLLKWSVPLGHVDAIEYGSSAGTGEHSRHLAVHPPESLAVVANAKPNKVYMGPGQLYQDLQNLLHDLNVI 763 HSP 2 Score: 59.3066 bits (142), Expect = 3.229e-75 Identity = 65/285 (22.81%), Postives = 110/285 (38.60%), Query Frame = 2
Query: 2135 IKKVTQWYNDVKSFYERERELVNMNW----------------------IEIAIPSKDPKNENIRY---LFNVHSADKRMEWLAEFENVKLRLTHNNNPGWYLQEDNIYDGEAAVLRRTLPLLSNLMPMFIIENKH-KVTCSL-----------EVSMTTTMKPILWLFSGSDHLGMITLMEMDMTSVPKVMESFVACETRICC-----------AERVPEDGFYSLVPYIQNVSVWVGTMAGRILLFDPNIEERYPSLH---TTLKDAVISLKYCRNRMFAGLAN 2836
I ++TQ ++K Y+ + V +W I++ +P K K+ + +FN + + W+ + KL L N+ GW+ ED DG + + PLL MP+ + + + K+ C+ + +T LW+ S + +G I ++ S PKV+E F E+RI C P D V ++ VGT G I ++ + + L T K V+SL ++AGL N
Sbjct: 763 IGQITQLIGNLKGNYQNLNQSVAHDWTSGLQRLILKKEDEIRAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTPAIKESWVNSLQMAKLALEEENHMGWFCVED---DGN-HIKKEKHPLLVGHMPVMVAKQQEFKIECAAYNPEPYLNNESQPDSFSTAHGFLWIGSCTHQMGQIAIVSF-QNSTPKVIECF-NVESRILCMLYVPVEEKRREPGAPPDPETPAVRASDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVN 1041 The following BLAST results are available for this feature:
BLAST of TCONS_00072284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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