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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072207 ID=TCONS_00072207|Name=TCONS_00072207|organism=Clytia hemisphaerica|type=transcript|length=1458bpRun BLAST on NCBI protein sequence of TCONS_00072207-protein >TCONS_00072207-protein ID=TCONS_00072207-protein|Name=TCONS_00072207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp MRSCKKLLDHYSLTGWTASRRSCACQRYQFIKMASTTSSPSEPLTISKAARun BLAST on NCBI transcript from alignment at scaffold_71:1046583..1065184- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072207 ID=TCONS_00072207|Name=TCONS_00072207|organism=Clytia hemisphaerica|type=transcript|length=18602bp|location=Sequence derived from alignment at scaffold_71:1046583..1065184- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:1046583..1065184- >TCONS_00072207 ID=TCONS_00072207|Name=TCONS_00072207|organism=Clytia hemisphaerica|type=CDS|length=19488bp|location=Sequence derived from alignment at scaffold_71:1046583..1065184- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072207 vs. Swiss-Prot (Human)
Match: KAT3 (Kynurenine--oxoglutarate transaminase 3 OS=Homo sapiens GN=KYAT3 PE=1 SV=1) HSP 1 Score: 365.925 bits (938), Expect = 5.198e-121 Identity = 203/449 (45.21%), Postives = 279/449 (62.14%), Query Frame = 2
Query: 86 ASRRSCACQ-RYQFIKMAS--------TTSSPSEPLTISKAAQSVPENVWVKSVKLVQEYKPVNLGQGFPDFPEIVPKRLRKNLCATQADDAPVHYNQYARGQGQNDLVRELALLYSPLMGKTIDPMSEILVTVGAYESLHCAVHAVTNPGDEVILIEPYFDSYGETVRVIGATARNVPXXXX---XXXXXXXDFVLDKEELRNAFNEKTKCIIVNTPHNPTGKMFDQEEIEFIADLCKKHNVLYISDEVYEWLHYE-NKHVRVASLPGMWERTITICSAGKTFNATGFKTGWALGPKYLISAAMGIHQGIIYTVPTPLQIALAETIKEERALIGTDESYWKFLNETMTKKREEMFQLATEAGLNPIKPDGGYFMVMDLSNLDFE-PPVESKDVYDQRFCEWLVKEKGIAAIPISAFFSKNHKEEFQRFVRFCFIKGDSTMQQAAEKLR 1390
A R C+ R +F+K S T++ S T +K + + NVW++ KL + VNLGQGFPD P +++ L A D+ NQY RG G LV+ L+ LY L K ID EILVTVGAY SL + A+ + GDEVILI P++D Y VR+ GAT +PL+ K SS D+ LD +EL + FN KTK II+NTPHNP GK++++EE++ IADLC K++ L ISDEVYEWL Y NKH+++A+ PGMWERTITI SAGKTF+ TG+K GW++GP +LI + Q IYT TPLQ ALA+ + + E Y+ L + + KR+ M +L GL PI PDGGYF++ D+S LD + +++ + YD +F +W+ K K ++AIP+SAF + K +F++FVRFCFIK DST+ A E ++
Sbjct: 4 AQRSLCSLSGRAKFLKTISSSKILGFSTSAKMSLKFTNAKRIEGLDSNVWIEFTKLAADPSVVNLGQGFPDISP--PTYVKEELSKIAAIDS---LNQYTRGFGHPSLVKALSYLYEKLYQKQIDSNKEILVTVGAYGSLFNTIQALIDEGDEVILIVPFYDCYEPMVRMAGATPVFIPLRSKPVYGKRWSSSDWTLDPQELESKFNSKTKAIILNTPHNPLGKVYNREELQVIADLCIKYDTLCISDEVYEWLVYSGNKHLKIATFPGMWERTITIGSAGKTFSVTGWKLGWSIGPNHLIKHLQTVQQNTIYTCATPLQEALAQAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLESVGLKPIVPDGGYFIIADVSLLDPDLSDMKNNEPYDYKFVKWMTKHKKLSAIPVSAFCNSETKSQFEKFVRFCFIKKDSTLDAAEEIIK 447 The following BLAST results are available for this feature:
BLAST of TCONS_00072207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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