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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072120 ID=TCONS_00072120|Name=TCONS_00072120|organism=Clytia hemisphaerica|type=transcript|length=375bp
CAATGGACAAGAAGATAAGAACGATGGACAAGAAGATATGGAGATATGCG
AGGAGGAAGTTCAacacaatcaaaacaaaatgGCACAAAAACAAGTTGAT
AACCATCAAACTTCATTTGGTAGCAATGCCAATGACAGTTCCAATGCTCA
ATATGCTTTGAGCTTTCCAAACGCAAACACCCAAGGTATCAGTGAAAACA
CTAAAGTTGATAATCAGCACATTGATAACGATACAGAAATGGCTGAAGAG
AAGCCTAGTGAGGAAGGACAAAACAGCAAAATTGTTGGCAAGGAAGAAAA
CAAATCAGAGAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAATCTG
AACTATCAAAACTTAAAGAAGAACG Run BLAST on NCBI transcript from alignment at scaffold_71:634544..637128+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072120 ID=TCONS_00072120|Name=TCONS_00072120|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at scaffold_71:634544..637128+ (Clytia hemisphaerica)
CAATGGACAAGAAGATAAGAACGATGGACAAGAAGATATGGAGATATGCG
AGGAGGAAGTTCAacacaatcaaaacaaaatggtgaaattagttttattt
tttttcagtgattaaTACAATACTTGCAAACTTTTAAAGTAGTAGATATA
AACAGTCTAGCCCCACAGTATCAGGTTTAACATCATATAGtcaataaaat
ataaaacacTGCATAGTActgcaaatagggaaatttcagtTGGTCGTTAA
ATTTTTGAGTGTAACGAACAGAGGGTGTGGCGGAACCATCTTAGAAAATT
TTGTAGGTCATTCctttagattggctaaacacctattttaATTTAAGTTA
ACTGTTCCTCTTTTAATTAGAAGCGCTATTAAGTATTTATCTAAGCctct
aatcttcaaattttaactgGACAAAATTAAAAACTGAGCCTCAGAATGAC
AGgtagaaactacaaaatgaTCTGTAATTACTGGTCACTGGctgttattt
gcagcactgacaTGCTATATCCACTGTAATCTCTTACTACTTGACTGGAT
CTGGCTTCCTATAAAAAAGGAAGTTGTTATGACAGACTAGTCAACTTTAA
AGCTGAACATACTTCCATGACAAATCTGTGAGTATCTAGCCTATCTAGTG
TGTAAATGAATATGATATCTTGCTTAGATGCTCAGACCTTAACAGACAGG
AAAAAATGAATACAAGACCTAAACATTCAATATTTAATTGCTTTACATTG
CTGTCGTTTAAAATTTTTATGTACTATTTTTATATTACaataatatgatt
tttttactaTTTAAATTCTTTATTTAAGGCACAAAAACAAGTTGATAACC
ATCAAACTTCATTTGGTAGCAATGCCAATGACAGTTCCAATGCTCAATAT
GCTTTGAGCTTTCCAAACGCAAAGTAAGTCTTAGTAAAAGTACATGtgta
attttttagtttttgaaataaaataaaaactacaATAAGATAATAAATTT
GGTAATaacttatatattttttaacctATGCATTTACACTTTACATCTAT
CTCACTTGTTAGGTCTTTTTGGGACGTACAACTTTTATTGCATATAAATT
TATATCATTCAATCTTAGCACCCAAGGTATCAGTGAAAACACTAAATGTA
AGAATCAGCACATTGATAACGATACAGAAATTGCTGAAGAGAAGCCTAGT
GAGGAAGGACAAAACAGCAAAATTGTTGGCAAggaagaaaataaatcaga
gAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAATCTGAACTATCAA
AGTAAGAActacattttttgtttacttataCCGATTTTATGAATATTGCA
CCAATAACACCATCAGCAGTTGCAGTATGGTTATTCAGAAATTATTGCTA
ATTCTGAATGAAAATTGTGTCATCACAAGCgacttcaaattcaaaatgga
aCGCTCCAATGAAACGTTCATTGAATCTAGTTTAAGAACCTATGCATTTA
CACTTTTATATATCTATCTCAGTTATTAGTTCGTtgagcctcaagttcct
tataaacgtgttctttataaaaaaacgtgtattacacTAATAACACCATC
AGTAGTTGCAGTAGGGTTATTCAGAAATTATTGCTAATTCTGAATGAAAA
TTGTGTCATCACAAGCgacttcaaattcaaaatggaaTGCTCCAATGAAT
CGTTCATTGAATCTAGCTTTAAAGAACCTATGCATTTCCACTTTTAAGTA
TATATCTATCTCAGTTATAAATTAGTTTGTTGTGGGATATACCAATTTTA
TTGCATATAGATTTATATCATTCAATCTTAGCACCCAAGGTATCAGTGAA
AACACTAAAGTTGATAATCAGCACATTGATAACGATACAGAAATGGCTGA
AGAGAAGCCTAGTGAGGAAGGACAAAACAGCAAAATTGTTGGCAAGGAAG
AAAACAAATCAGAGAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAA
TCTGAACTATCAAAGTAAGAActacattttttgtttactcagtTAATACT
ATAAAACATTCTAGAACGTTCTCATTTACGTTCTCATCagtatacatttt
ttatttactaaTACTAATTTTATGAGTATTACACCAATAACACCATCAGT
AGTTACAATATGGTTATTCAGAAATTATTGctaatttttgaatgaaaatt
gtgtCATCACAAGCAACCTTCAATACAAAACGGAACGTTCCAATGAATTG
GTCATTAAATTATTCaatcattctattttatttactAGTTTAAGAACGTT
ACTGAacattcaaaatgtttttcagACGTTCTTATCAAGTTGAATTCAAC
CTTTGAACGCTAAGGATTGTTCTGGAGTGGAATGTTTGAGAACAACTGAA
AACGTTCTGGAACATCCAGGAaagctatgggatgggtttgcAAACTTTCA
GAATGTTCCATTTCATTTGTACTTTAAATCTTTTGTGATGACACAATTGT
CCTTAACTCGATGAATATAGCTGTGATATACCATTGTTTCTAGCCTCTTA
TTTATGTACTTTATTGGTAGACTTAAAGAAGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072120-exon-scaffold_71-1491911889:634544..634625 | TCONS_00072120-exon-scaffold_71-1491911889:634544..634625 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1510915933:634544..634625 | TCONS_00072120-exon-scaffold_71-1510915933:634544..634625 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1575043694:634544..634625 | TCONS_00072120-exon-scaffold_71-1575043694:634544..634625 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1491911889:635372..635466 | TCONS_00072120-exon-scaffold_71-1491911889:635372..635466 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1510915933:635372..635466 | TCONS_00072120-exon-scaffold_71-1510915933:635372..635466 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1575043694:635372..635466 | TCONS_00072120-exon-scaffold_71-1575043694:635372..635466 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1491911889:636375..636557 | TCONS_00072120-exon-scaffold_71-1491911889:636375..636557 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1510915933:636375..636557 | TCONS_00072120-exon-scaffold_71-1510915933:636375..636557 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1575043694:636375..636557 | TCONS_00072120-exon-scaffold_71-1575043694:636375..636557 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1491911889:637114..637128 | TCONS_00072120-exon-scaffold_71-1491911889:637114..637128 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1510915933:637114..637128 | TCONS_00072120-exon-scaffold_71-1510915933:637114..637128 | Clytia hemisphaerica | exon |
| TCONS_00072120-exon-scaffold_71-1575043694:637114..637128 | TCONS_00072120-exon-scaffold_71-1575043694:637114..637128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:634544..637128 + |
Blast
The following BLAST results are available for this feature:
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