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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007181 ID=TCONS_00007181|Name=TCONS_00007181|organism=Clytia hemisphaerica|type=transcript|length=2436bp
GCCGTCATTTAATTcgtatattttacagaccatgaAACTCAACATCAGCT
ACAACAAAGTTCGTTACATTATTGAAGTATCACCAAACGAAAATGTTtta
caaatcaaacaaaaggtTCTTCAGGCGTCACAACCGCCCATTCAGTGTAA
CGCCACACATGCAACAAAATCGGAAACCATGTTATCTTTTAATGGTACCA
TCTTGGATGATGATATTGTTGTTAGTGACGTTGGCTTGGTATCTGGAAAC
ACGTTGCTATATAAACACGTGGAACTTGCACAATGTAAACTAAAAGTTCA
TGTTGGTTTCTTGAAAACAGTTATCGAGCTTGGTGCGGAGATTGATTTTG
AACAAACTACGATAGGTGATGTTCGAATGATGATTCAGGACCATTTAGGA
ATTCCCATGAGTATCTTTTATTTGACGCAAATGAATGGTGATGCTCTAGA
GCTTTATGATATCCACACTCTAAGATATTACCAAATCAAGGAGCAAGATG
AGCTGATCCTCACTGTATGGAAGCACACGAAAGGCGTCATTGTCGGTGCT
TTAAACGCCGACATCTCAAAGACAATGTCAAGTTTACCAAGTTTCCATGA
CAACCCTGCGTTAAACAGATATTTACTGAGAACCATTTTGTTCATTGCGT
CACATTTCAATTTCACCAAACTGGCAGCTTTAGCTTTGCAACGAGGCATA
AGATGCGAAGAACCCGTAGGCGAACACTGTTCACGCCAATGGTGCTCCAC
CCAATCCCACCCTGGCATCTTCAAAACGCCCATCCATCAAGCCGCCCAAA
TGGGCAGTTTTCAATGTCTCAAAATGTTCGTACGTCACAGCCCGTCNCGC
CCAAATGGGCAGTTTTCAATGTCTCAAAATGTTCGTACGTCACAGTCCGT
CTTCTATGATCGCTCGAGATGCTTATAAAAGAACACCAAGCAATTACGCG
TCCAAATATAAGAATTTCGAATGCTGGAAGTTACTTATCGCTTCTCAATT
TGTACATTCGCGTATCAACGGTTTTAGCTTAGCTTCACATGCTCGGATAA
TGAAATGGTGCTCAGCAGCTAAAGAAAGAGTCAGTTATTTCAAAGGAGAA
GACACAAAGCACTCCTTACTGCTACATTCAACCATAGGGAAAGAAAACAA
TACCTACCTAGGGAATGAGATCACTGTAGCAGGATTTAACCATGGGAAAT
CAATCAAGAAATGCCCTTGCAACCATGAACCTTTAAAACCACTACCTAGG
AGAAACACCAACCACAAGTTTGAAGTTAAATTCCCTGACGAGGACATTGA
AATTCCCCATAGGGACTCGATTCTTTCACGAAGAAAATCAAAAGCCATAA
GACCtgattcaaaatcaaaacctaTTCTTAAAGACTCCCACACTAAATCG
TTCAAACCGACAAACATCCAAAACAATCGAAAAGAAAGAGGGAAAAGTCT
AGATTTGAATGACGCTAAACTTGATTTCCCCAAAACAGAACCGTCCACAA
GAAAAGACAGCCATAAAAAACTGCCTACGATACGAAAATATAAAACGTTA
CCCAATATAGTAACTGAAACTAATAACTCAAAACATAAGTCAATAATCCG
AgacaatgcagtcaaaacagaGACAGGAGCGAAAATTGACAATGATGTGG
AGCCAGATGAAAACGAATCAGTTCTCAACACTTCTCTACCGCAATTACAA
ATGGCACACATGAAAGAGAGGCTGAGCAATCGAAGGAGTTCATCTTTATC
GAATCTAGCTTTTTTACAACAAGAACAGCAAAATGTACATAATATCATTC
TTGAAACTACGGGAATGTCTTCTAAAGACTTGGCAAGCAAATGTTTACAA
CTTGGTGAAAGTTTCACTGGACGATCTTGGATGAGACAATTCAGAATCGC
CATGAATAGCAGCACCAACAGGATTAAGAGAGGTCGACCTAAGACTAGTG
TTTTACATTAAGCTAGTAAGCTAGTCTAATATCGACTATTCTTTTCTAAT
TTCGTCAACCCTtttcacacccccttctcacagacccacggtccccggtg
gaaaattacccttcaatttttgtccccaccgaaaaatatcaaataaacca
atcctcactgcaaaatgttTGCATTTTTTCCCATCCTCATCCCAGCcgta
aaaaaataatatcaatccccatcgagtttcagtccgttattctcattccc
actggctgaaaaaatcctactgggtctgtgagaagggggtatatTTTCAA
AGTTACTAATTAAAGTTACCTTTTCTCTACATAGCAGTGAgtgtgaaaaa
cttttttctatcgGTAACCCCGCATATCCTATCTTTAGGGTTGTTAAAAG
GATACAGATTGCGAAAGGCTGTAAATTTTTAACTGTATTTGGTAATATTT
CACTCTTAATATTTCAATCATTTCAACAAGCACAAG Run BLAST on NCBI protein sequence of TCONS_00007181-protein >TCONS_00007181-protein ID=TCONS_00007181-protein|Name=TCONS_00007181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MGSFQCLKMFVRHSPSSMIARDAYKRTPSNYASKYKNFECWKLLIASQFV
HSRINGFSLASHARIMKWCSAAKERVSYFKGEDTKHSLLLHSTIGKENNT
YLGNEITVAGFNHGKSIKKCPCNHEPLKPLPRRNTNHKFEVKFPDEDIEI
PHRDSILSRRKSKAIRPDSKSKPILKDSHTKSFKPTNIQNNRKERGKSLD
LNDAKLDFPKTEPSTRKDSHKKLPTIRKYKTLPNIVTETNNSKHKSIIRD
NAVKTETGAKIDNDVEPDENESVLNTSLPQLQMAHMKERLSNRRSSSLSN
LAFLQQEQQNVHNIILETTGMSSKDLASKCLQLGESFTGRSWMRQFRIAM
NSSTNRIKRGRPKTSVLH Run BLAST on NCBI transcript from alignment at sc0000074:149154..152195- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007181 ID=TCONS_00007181|Name=TCONS_00007181|organism=Clytia hemisphaerica|type=transcript|length=3042bp|location=Sequence derived from alignment at sc0000074:149154..152195- (Clytia hemisphaerica)
GCCGTCATTTAATTCGTATATTTTACAGACCATGAAACTCAACATCAGCT
ACAACAAAGTTCGTTACATTATTGAAGTATCACCAAACGAAAATGTTTTA
CAAATCAAACAAAAGGTTCTTCAGGCGTCACAACCGCCCATTCAGTGTAA
CGCCACACATGCAACAAAATCGGAAACCATGTTATCTTTTAATGGTACCA
TCTTGGATGATGATATTGTTGTTAGTGACGTTGGCTTGGTATCTGGAAAC
ACGTTGCTATATAAACACGTGGAACTTGCACAATGTAAACTAAAAGTTCA
TGTTGGTTTCTTGAAAACAGTTATCGAGCTTGGTGCGGAGATTGATTTTG
AACAAACTACGATAGGTAGAGACAAAATCTTTTCAAAGACTTTATCGGTA
TATTCGTCTGTTCATTCCTTACAGTGAATTTTGAACACATACAAAATGGG
TGATAGATATCTCATGTCAACATACCAACAACGTCTAAATGGTAAACACC
CAATAATTTTCATAAAACTCAAAAGTTGTTTTCTTTTCCTTTTAGGTGAT
GTTCGAATGATGATTCAGGACCATTTAGGAATTCCCATGAGTATCTTTTA
TTTGACGCAAATGAATGGTGATGCTCTAGAGCTTTATGATATCCACACTC
TAAGATATTACCAAATCAAGGTAGGTGCTGCGCTTGCCCATAATTTTAAA
AGAAAACGTCCATTTTACCTGTAAAAGCAACCCTGTCATCATAAGGAGTT
GGCCATATTTGCCCTGTTTTGAACTTTGGACTTTTCCAAGAATTTTGCTC
TTTTGATTGACAGATTGTTTTTCCTTCTTTCATAATCCAGGGATACTGAA
ATTAAAATTTATGGTTTTTGCTTTTGGTATTCGCTTTAAGTGTTCAATGT
AATCTTTTTGCAGGAGCAAGATGAGCTGATCCTCACTGTATGGAAGCACA
CGAAAGGCGTCATTGTCGGTGCTTTAAACGCCGACATCTCAAAGACAATG
TCAAGTTTACCAAGTTTCCATGACAACCCTGCGTTAAACAGATATTTACT
GAGAACCATTTTGTTCATTGCGTCACATTTCAATTTCACCAAACTGGCAG
CTTTAGCTTTGCAACGAGGCATAAGGTAAAGTGTTAACAAGTGTTTCTGG
GAATCTCGGTTCTTGTCGGTTAACAGTAGTGACTCGACCTTTTAACCGGA
AAGGTTTACGTATTATCAAACTTCGTCAAATTTAAAAACTATGCTTTTGC
TATCGAAAATACAGAAAGGCACCTTTGGGATCAGTAAAACTCGTTTCTTA
TCTTTTAGATGCGAAGAACCCGTAGGCGAACACTGTTCACGCCAATGGTG
CTCCACCCAATCCCACCCTGGCATCTTCAAAACGCCCATCCATCAAGCCG
CCCAAATGGGCAGTTTTCAATGTCTCAAAATGTTCGTACGTCACAGCCCG
TCNCGCCCAAATGGGCAGTTTTCAATGTCTCAAAATGTTCGTACGTCACA
GTCCGTCTTCTATGATCGCTCGAGATGCTTATAAAAGAACACCAAGCAAT
TACGCGTCCAAATATAAGAATTTCGAATGCTGGAAGTTACTTATCGCTTC
TCAATTTGTACATTCGCGTATCAACGGTTTTAGCTTAGCTTCACATGCTC
GGATAATGAAATGGTGCTCAGCAGCTAAAGAAAGAGTCAGTTATTTCAAA
GGAGAAGACACAAAGCACTCCTTACTGCTACATTCAACCATAGGGAAAGA
AAACAATACCTACCTAGGGAATGAGATCACTGTAGCAGGATTTAACCATG
GGAAATCAATCAAGAAATGCCCTTGCAACCATGAACCTTTAAAACCACTA
CCTAGGAGAAACACCAACCACAAGTTTGAAGTTAAATTCCCTGACGAGGA
CATTGAAATTCCCCATAGGGACTCGATTCTTTCACGAAGAAAATCAAAAG
CCATAAGACCTGATTCAAAATCAAAACCTATTCTTAAAGACTCCCACACT
AAATCGTTCAAACCGACAAACATCCAAAACAATCGAAAAGAAAGAGGGAA
AAGTCTAGATTTGAATGACGCTAAACTTGATTTCCCCAAAACAGAACCGT
CCACAAGAAAAGACAGCCATAAAAAACTGCCTACGATACGAAAATATAAA
ACGTTACCCAATATAGTAACTGAAACTAATAACTCAAAACATAAGTCAAT
AATCCGAGACAATGCAGTCAAAACAGAGACAGGAGCGAAAATTGACAATG
ATGTGGAGCCAGATGAAAACGAATCAGTTCTCAACACTTCTCTACCGCAA
TTACAAATGGCACACATGAAAGAGAGGCTGAGCAATCGAAGGAGTTCATC
TTTATCGAATCTAGCTTTTTTACAACAAGAACAGCAAAATGTACATAATA
TCATTCTTGAAACTACGGGAATGTCTTCTAAAGACTTGGCAAGCAAATGT
TTACAACTTGGTGAAAGTTTCACTGGACGATCTTGGATGAGACAATTCAG
AATCGCCATGAATAGCAGCACCAACAGGATTAAGAGAGGTCGACCTAAGA
CTAGTGTTTTACATTAAGCTAGTAAGCTAGTCTAATATCGACTATTCTTT
TCTAATTTCGTCAACCCTTTTCACACCCCCTTCTCACAGACCCACGGTCC
CCGGTGGAAAATTACCCTTCAATTTTTGTCCCCACCGAAAAATATCAAAT
AAACCAATCCTCACTGCAAAATGTTTGCATTTTTTCCCATCCTCATCCCA
GCCGTAAAAAAATAATATCAATCCCCATCGAGTTTCAGTCCGTTATTCTC
ATTCCCACTGGCTGAAAAAATCCTACTGGGTCTGTGAGAAGGGGGTATAT
TTTCAAAGTTACTAATTAAAGTTACCTTTTCTCTACATAGCAGTGAGTGT
GAAAAACTTTTTTCTATCGGTAACCCCGCATATCCTATCTTTAGGGTTGT
TAAAAGGATACAGATTGCGAAAGGCTGTAAATTTTTAACTGTATTTGGTA
ATATTTCACTCTTAATATTTCAATCATTTCAACAAGCACAAG Coding sequence (CDS) from alignment at sc0000074:149154..152195- >TCONS_00007181 ID=TCONS_00007181|Name=TCONS_00007181|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0000074:149154..152195- (Clytia hemisphaerica)
ATGGGCAGTTTTCAATGTCTCAAAATGTTCGTACGTCACAGTCCGTCTTC
TATGATCGCTCGAGATGCTTATAAAAGAACACCAAGCAATTACGCGTCCA
AATATAAGAATTTCGAATGCTGGAAGTTACTTATCGCTTCTCAATTTGTA
CATTCGCGTATCAACGGTTTTAGCTTAGCTTCACATGCTCGGATAATGAA
ATGGTGCTCAGCAGCTAAAGAAAGAGTCAGTTATTTCAAAGGAGAAGACA
CAAAGCACTCCTTACTGCTACATTCAACCATAGGGAAAGAAAACAATACC
TACCTAGGGAATGAGATCACTGTAGCAGGATTTAACCATGGGAAATCAAT
CAAGAAATGCCCTTGCAACCATGAACCTTTAAAACCACTACCTAGGAGAA
ACACCAACCACAAGTTTGAAGTTAAATTCCCTGACGAGGACATTGAAATT
CCCCATAGGGACTCGATTCTTTCACGAAGAAAATCAAAAGCCATAAGACC
TGATTCAAAATCAAAACCTATTCTTAAAGACTCCCACACTAAATCGTTCA
AACCGACAAACATCCAAAACAATCGAAAAGAAAGAGGGAAAAGTCTAGAT
TTGAATGACGCTAAACTTGATTTCCCCAAAACAGAACCGTCCACAAGAAA
AGACAGCCATAAAAAACTGCCTACGATACGAAAATATAAAACGTTACCCA
ATATAGTAACTGAAACTAATAACTCAAAACATAAGTCAATAATCCGAGAC
AATGCAGTCAAAACAGAGACAGGAGCGAAAATTGACAATGATGTGGAGCC
AGATGAAAACGAATCAGTTCTCAACACTTCTCTACCGCAATTACAAATGG
CACACATGAAAGAGAGGCTGAGCAATCGAAGGAGTTCATCTTTATCGAAT
CTAGCTTTTTTACAACAAGAACAGCAAAATGTACATAATATCATTCTTGA
AACTACGGGAATGTCTTCTAAAGACTTGGCAAGCAAATGTTTACAACTTG
GTGAAAGTTTCACTGGACGATCTTGGATGAGACAATTCAGAATCGCCATG
AATAGCAGCACCAACAGGATTAAGAGAGGTCGACCTAAGACTAGTGTTTT
ACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007181-exon-sc0000074-1575043694:151831..152195 | TCONS_00007181-exon-sc0000074-1575043694:151831..152195 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1575043694:151526..151650 | TCONS_00007181-exon-sc0000074-1575043694:151526..151650 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1575043694:151071..151282 | TCONS_00007181-exon-sc0000074-1575043694:151071..151282 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1575043694:149154..150887 | TCONS_00007181-exon-sc0000074-1575043694:149154..150887 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1510915933:151831..152195 | TCONS_00007181-exon-sc0000074-1510915933:151831..152195 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1510915933:151526..151650 | TCONS_00007181-exon-sc0000074-1510915933:151526..151650 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1510915933:151071..151282 | TCONS_00007181-exon-sc0000074-1510915933:151071..151282 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1510915933:149154..150887 | TCONS_00007181-exon-sc0000074-1510915933:149154..150887 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1491911889:151831..152195 | TCONS_00007181-exon-sc0000074-1491911889:151831..152195 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1491911889:151526..151650 | TCONS_00007181-exon-sc0000074-1491911889:151526..151650 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1491911889:151071..151282 | TCONS_00007181-exon-sc0000074-1491911889:151071..151282 | Clytia hemisphaerica | exon |
| TCONS_00007181-exon-sc0000074-1491911889:149154..150887 | TCONS_00007181-exon-sc0000074-1491911889:149154..150887 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:149154..152195 - |
Blast
BLAST of TCONS_00007181 vs. Swiss-Prot (Human)
Match: ANKUB (Protein ANKUB1 OS=Homo sapiens GN=ANKUB1 PE=2 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 2.102e-23 Identity = 79/270 (29.26%), Postives = 122/270 (45.19%), Query Frame = 2
Query: 32 MKLNISYNKVRYIIEVSPNENVLQIKQKVLQASQPPIQCNATHATKSETMLSFNGTILDDDIVVSDVGLVSGNTLLYKHVELAQCKLKVHVGFLKTVIELGAEIDFEQTTIGDVRMMIQDHLGIPMSIFYLTQMNGDALELYDIHTLRYYQIKEQDELILTVWKHTKGVIVGALNADISKTMSSLPSFHDNPALNRYLLRTILFIASHFNFTKLAALALQRGIRCEEPVGEHCSRQWCSTQSHPGIFKTPIHQAAQMGSFQCLKMFVRHS 841
M++ I++ +VS +E V +K + P+ + E M + G L D ++DVG+ +TL E + L V + + + I T+ D+R ++ G+P+S++ L G LE+YD +TL+ YQ L L VW K ++G L K L + P L +Y R L+IA+ + +L AL++G R E VG H R WC H + K PIH AA+ G LK FV +S
Sbjct: 1 MRIFIAFEGSFEPFDVSADETVEVVKLMIKDYFHIPLSEDKQGRRYLELM--YAGAALKDSWSLADVGISFCSTLKCFVKEEDKPTLYVFNAVTQDTMPVMESISLLDKTVSDLRTLVTLRCGLPVSVYCLRTPRG--LEMYDCNTLKDYQTDIGTTLRLDVWDGWKEFLMGCLLGQKLKVQRYLSK--EGPVL-KYQKRVALYIAAFCGYIELTEWALKQGARPHEAVGVHPYRAWCHEALHADVSKCPIHAAAEAGQLLILKAFVNYS 263
The following BLAST results are available for this feature:
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