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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072235 ID=TCONS_00072235|Name=TCONS_00072235|organism=Clytia hemisphaerica|type=transcript|length=1523bp
tgtgtgatagatcatttggtctaaatttcagcaaaatccaagagggtgag
gtatcacaccctgaagactcttaaaaaaaatggctcttaatccAACCTGA
TTCGCGGAAATTAGCTCTCAGAAAACAAATCAATATTCCTGCTGTGAATT
ATCAACTGTAGTCCTAATCATAAATTAGCTAGTCtgtgtatttgcacttt
tgaggacggtaaagtgaacgaagcgatttggaataacccgcagttctgac
cagcaaaatcgaggacgtggtaaaagtgctgatttaccgtcgtcctcagc
tggtcagtatctagtcaaattaaaaccttaccgtctccgtcagagaaaaa
cacacatacataaactcagtATAATCAACTTTAGGGGAacataaattttc
tttcaaaattgttAAGCCGTTCTTCAATCTAAGGTTAAGTATCTTCCTCC
TTTCCACGATGTATACATTTTTTCTTGGATTGTGTTTGTGATTTTAactc
cttttcttttttttctgaaaagagcTTGCAACGGTTTCAACATCTCAGGT
GTAATAAGTTTAGGACAATCAaggtcaaaattcactttttccaAATATAT
CATTTTCTTCAAAGTTCTTTTCATTTCCTTAAAGTTTTCCTTTAAATTCC
TCAATGCGTTTGTTGATATTTCAACAATCTTGACGTCTTTCTTGACCAGA
GCTTTTAAATCTTCAACAGTAAAATCATATACATTGACATAAAATGTCTT
TTTGCTATCTGGTGATTGAAATTGTCTGTTGTGCAAAACAAGACGACATT
AAAACTCTTCAGTGATTGCCTTTCCATTATTAAAACTTTGAGTATTTGGA
TGNGTTTCAACGTTGCAACTAACTGAATAAATCTCTGTACATTTTCTTTG
GTGATTTTAAAACAATATGTTCGAATCTCTGTTATTTTTACAAATCCAGC
AATTTTTCGTAGCCAGTCGATATCCCATTGTTTCGGGCGTTCGTTCCTAA
ACTCCACACAATCATGGTCGATAATTAGCTCCTTTATTAAATTGGAAGAT
TCAACACATTTTAGGAGAATATTAAAATCATCTTCGGTCATTGCTTTAAA
TGCTCGAGTATGCAATATAGCAGATACTTTGATCTCTTCCATCATCTTTA
CATCAAAGGTTTTTTTACATGCATAGTGATCGATGTATACCAGCCGTAGA
TGAGGTAATAATTCATTAGAAATGACCTCAGCAGATAAATCTATTGAGTA
GGAAAGGTCAACAGTGTGAATCTCTCGAATTGGCAAATGAGATAGTTGCT
GCAAACTGTACAAACCATGGCATTCTTTTGGAAGTCTTGGTTTATTCCAT
ATTATTGGCAAACACGACGAATACATTCTTTTTGAACATCGATTGAGCTT
TTTGACGTCTTCAAAAGATAACATATTGATTATCGTAGACAAGATTTCAT
TTGGTAATATATCCATCTTTTGTAAtattaaatttatcaatttgttATCA
ATTTGTGCTACTttaatctgaaa Run BLAST on NCBI protein sequence of TCONS_00072235-protein >TCONS_00072235-protein ID=TCONS_00072235-protein|Name=TCONS_00072235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
FQIKVAQIDNKLINLILQKMDILPNEILSTIINMLSFEDVKKLNRCSKRM
YSSCLPIIWNKPRLPKECHGLYSLQQLSHLPIREIHTVDLSYSIDLSAEV
ISNELLPHLRLVYIDHYACKKTFDVKMMEEIKVSAILHTRAFKAMTEDDF
NILLKCVESSNLIKELIIDHDCVEFRNERPKQWDIDWLRKIAGFVKITEI
RTYCFKITKENVQRFIQLVATLKXIQILKVLIMERQSLKSFNVVLFCTTD
NFNHQIAKRHFMSMYMILLLKI Run BLAST on NCBI transcript from alignment at scaffold_71:276947..278469 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072235 ID=TCONS_00072235|Name=TCONS_00072235|organism=Clytia hemisphaerica|type=transcript|length=1523bp|location=Sequence derived from alignment at scaffold_71:276947..278469 (Clytia hemisphaerica)
tttcagattaaAGTAGCACAAATTGATaacaaattgataaatttaataTT
ACAAAAGATGGATATATTACCAAATGAAATCTTGTCTACGATAATCAATA
TGTTATCTTTTGAAGACGTCAAAAAGCTCAATCGATGTTCAAAAAGAATG
TATTCGTCGTGTTTGCCAATAATATGGAATAAACCAAGACTTCCAAAAGA
ATGCCATGGTTTGTACAGTTTGCAGCAACTATCTCATTTGCCAATTCGAG
AGATTCACACTGTTGACCTTTCCTACTCAATAGATTTATCTGCTGAGGTC
ATTTCTAATGAATTATTACCTCATCTACGGCTGGTATACATCGATCACTA
TGCATGTAAAAAAACCTTTGATGTAAAGATGATGGAAGAGATCAAAGTAT
CTGCTATATTGCATACTCGAGCATTTAAAGCAATGACCGAAGATGATTTT
AATATTCTCCTAAAATGTGTTGAATCTTCCAATTTAATAAAGGAGCTAAT
TATCGACCATGATTGTGTGGAGTTTAGGAACGAACGCCCGAAACAATGGG
ATATCGACTGGCTACGAAAAATTGCTGGATTTGTAAAAATAACAGAGATT
CGAACATATTGTTTTAAAATCACCAAAGAAAATGTACAGAGATTTATTCA
GTTAGTTGCAACGTTGAAACNCATCCAAATACTCAAAGTTTTAATAATGG
AAAGGCAATCACTGAAGAGTTTTAATGTCGTCTTGTTTTGCACAACAGAC
AATTTCAATCACCAGATAGCAAAAAGACATTTTATGTCAATGTATATGAT
TTTACTGTTGAAGATTTAAAAGCTCTGGTCAAGAAAGACGTCAAGATTGT
TGAAATATCAACAAACGCATTGAGGAATTTAAAGGAAAACTTTAAGGAAA
TGAAAAGAACTTTGAAGAAAATGATATATTtggaaaaagtgaattttgac
ctTGATTGTCCTAAACTTATTACACCTGAGATGTTGAAACCGTTGCAAgc
tcttttcagaaaaaaaagaaaaggagtTAAAATCACAAACACAATCCAAG
AAAAAATGTATACATCGTGGAAAGGAGGAAGATACTTAACCTTAGATTGA
AGAACGGCTTaacaattttgaaagaaaatttatgtTCCCCTAAAGTTGAT
TATactgagtttatgtatgtgtgtttttctctgacggagacggtaaggtt
ttaatttgactagatactgaccagctgaggacgacggtaaatcagcactt
ttaccacgtcctcgattttgctggtcagaactgcgggttattccaaatcg
cttcgttcactttaccgtcctcaaaagtgcaaatacacaGACTAGCTAAT
TTATGATTAGGACTACAGTTGATAATTCACAGCAGGAATATTGATTTGTT
TTCTGAGAGCTAATTTCCGCGAATCAGGTTggattaagagccattttttt
taagagtcttcagggtgtgatacctcaccctcttggattttgctgaaatt
tagaccaaatgatctatcacaca Coding sequence (CDS) from alignment at scaffold_71:276947..278469 >TCONS_00072235 ID=TCONS_00072235|Name=TCONS_00072235|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_71:276947..278469 (Clytia hemisphaerica)
tttcagattaaAGTAGCACAAATTGATaacaaattgataaatttaataTT
ACAAAAGATGGATATATTACCAAATGAAATCTTGTCTACGATAATCAATA
TGTTATCTTTTGAAGACGTCAAAAAGCTCAATCGATGTTCAAAAAGAATG
TATTCGTCGTGTTTGCCAATAATATGGAATAAACCAAGACTTCCAAAAGA
ATGCCATGGTTTGTACAGTTTGCAGCAACTATCTCATTTGCCAATTCGAG
AGATTCACACTGTTGACCTTTCCTACTCAATAGATTTATCTGCTGAGGTC
ATTTCTAATGAATTATTACCTCATCTACGGCTGGTATACATCGATCACTA
TGCATGTAAAAAAACCTTTGATGTAAAGATGATGGAAGAGATCAAAGTAT
CTGCTATATTGCATACTCGAGCATTTAAAGCAATGACCGAAGATGATTTT
AATATTCTCCTAAAATGTGTTGAATCTTCCAATTTAATAAAGGAGCTAAT
TATCGACCATGATTGTGTGGAGTTTAGGAACGAACGCCCGAAACAATGGG
ATATCGACTGGCTACGAAAAATTGCTGGATTTGTAAAAATAACAGAGATT
CGAACATATTGTTTTAAAATCACCAAAGAAAATGTACAGAGATTTATTCA
GTTAGTTGCAACGTTGAAACNCATCCAAATACTCAAAGTTTTAATAATGG
AAAGGCAATCACTGAAGAGTTTTAATGTCGTCTTGTTTTGCACAACAGAC
AATTTCAATCACCAGATAGCAAAAAGACATTTTATGTCAATGTATATGAT
TTTACTGTTGAAGATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072235-exon-scaffold_71-1491911889:276947..278469 | TCONS_00072235-exon-scaffold_71-1491911889:276947..278469 | Clytia hemisphaerica | exon |
| TCONS_00072235-exon-scaffold_71-1510915933:276947..278469 | TCONS_00072235-exon-scaffold_71-1510915933:276947..278469 | Clytia hemisphaerica | exon |
| TCONS_00072235-exon-scaffold_71-1575043694:276947..278469 | TCONS_00072235-exon-scaffold_71-1575043694:276947..278469 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:276947..278469 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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