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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072103 ID=TCONS_00072103|Name=TCONS_00072103|organism=Clytia hemisphaerica|type=transcript|length=900bp ATGTCTTTCACTATAAAAAGGCTTGGAGATTCTTCAATCAACCATCTTCA CTCATCAGTCCACTCAACAACGTAGAAGACCACCACAAAAATAACACCCA CAAAAATGAAGTTAATCATCGCTTGTGCCTTGGTTGCTGTTGCCGCAGCT ATTACCAACCCACCAATCACTGGAACCACACCACCAGCTATTCCATGCCC AAACTCATTATGCCAAGGAAAATATGACGGAAACTTTGCCCTCAAATCAC ACAGAAACTATTTCCTCCAATGTGTCGGTGGAAACGCTTATTGTCAAGCC TGCTTCCCACTTTCTTTGGAATTCAGTCAAAGATGTAACCAATGTTTGTA CAACCGCAAAGACGAATGTGTCACCACACAAAAATGGGAGCCAGCCACCA CCTTTGCTTGCCCAGACAAATGCCCAGCCCGTGGACCAGATTTCACTGGC AACATTAAAGATGACCATGAACCACGACAATACGTTGCTTGCTGGAAGGG AGTTACTGTTGGATGTATCGCCTGCCCAGGAAACTTGAAATTCAACGAGA AAGAAAATGCTTGCTTGTACGAAGGCAAATACCTTACCGCACCATACTAA ACACAATCGAACGAAGTCGTAAAACGAAAATCTCAAAACAGAAAACTCTG TTTTTACATCTTCACTTCACTTTCATTCTTTAGAATCCAACCTTTCTTGC AAGCCTCTATCTTGTTGTTCACTTTCCTGTCTAACCCTGTAACTGAAAAT CTTACTCTTCTATGAATTTCCTTCCTTctctatttttgaaattttctata atTCTATAATATGATAATTTATCTTATTGTAATATTTAtctaaatgtttc aaaaatattttttcatctgAAAGAAACTACACCTAAAAATTATAAAACCG Run BLAST on NCBI transcript from alignment at scaffold_71:138569..144342+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072103 ID=TCONS_00072103|Name=TCONS_00072103|organism=Clytia hemisphaerica|type=transcript|length=5774bp|location=Sequence derived from alignment at scaffold_71:138569..144342+ (Clytia hemisphaerica) ATGTCTTTCACTATAAAAAGGCTTGGAGATTCTTCAATCAACCATCTTCA
CTCATCAGTCCACTCAACAACGTAGAAGACCACCACAAAAATAACACCCA
CAAAAATGAAGTTAATCATCGCTTGTGCCTTGGTTGCTGGTAAGGCTTTC
attgtcatttttattttttggaatatttttcgtCTGATCAACTTAATTTT
TGGTCGAACCGAATTATTGAATATCTAAAGTTTGATTTCTTAGGCCAAAA
TTCTAATTCAAATTACTCAATATGTTTTAATCTATTTCCTTGTAAATTGG
CTATTGGAAAAACCTTCGTATATACAAGAGTAGACTTTATGAATAATCCc
tgtttttgtatcttttttgcAGTTGCCGCAGCTATTACCAACCCACCAAT
CACTGGAACCACACCACCAGCTATTCCATGCCCAAACTCATTATGCCAAG
GAAAATATGACGGAAACTTTGCCCTCAAATCACACAGAAACTATTTCCTC
CAATGTGTCGGTGGAAACGCTTATTGTCAAGCCTGCTTCCCACTTTCTTT
GGAATTCAGTCAAAGATGTAACCAATGTTTGTACAACCGCAAAGACGAAT
GTGTCACCACACAAAAATGGGAGCCAGCCACCACCTTTGCTTGCCCAGAC
AAATGCCCAGCCCGTGGACCAGACTTCACTGGCAACATTAAAGATGATCA
TGAACCACGACAATACGTTGCTTGCTGGAAGGGAGTTACTGTTGGATGTA
TCGCCTGCCCAGGAAACTTGAAATTCAACGAAAAAGAAAACGCCTGCTTG
TACGAAGGCAAATACCTTACCGCTCCATACTAAATTAAAAGNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGGATCGCCAACT
TTATCTATACTGTGATCAACGACTCGTCCATAGAAGGTTTACTTAAAGta
attgtttgtttgcttgattCAAGAGAGCTCAAAATTAGGATTTTCGATTC
CAACCTTGAATGTAAAAGCAATCATGATATTGACAACAGACTCATTAAGA
TTAATTACGATTCCTCAGACAGATTTTAACAGGAAACATCGGAACAACTG
TATCTTAGGAAAATCATCGCAATTCATAATTACTGGTATCTAAATAAGTA
TACAAGTTATGTAtgtatttatcaaaaatcctGTTGAGTAACAGGATGTG
CAGCCAATATTTCTATAGCTCGtttgtttttcaaatgaaattctCCATGA
TTGGCAGTAATTGAATGATCAGGCAGGACTTGTCAACTGGATGATAGATT
GTTGATGAACATGAAGAAGAACACATTCGTATCTATTCTTCTCCTGGTTT
GTGGTAAGTAAAATCGACCAGACAtttctgttaaaattttataataattt
tttttgtctctTCCAAAGTCGCTCTAAGggttaaagaaatcaaaacattt
caaagtagtccctctaagggtcggaaaattcacatCTTTTAGGAagtatt
tttgatttccagaaaagaaattgtaaaaatgtCTTTAACTAAGGGTAaga
tatttttcagaaatcgaagaaaatctttcaatgaAAGCAGATCCTTTTTA
TAGAGTTTTAGAGGGTTCTAGTGTGCTTCTGTGGACAACCCCTTTGATGA
AGATagattagcctggatatccagaccattaaacttttattttcactttt
aagtTTCAGTACtttaagaaacatttttaaattttataccAAGACAGCAA
GAAAGCCAAGGCTAACTTTAACTTGCCTGTTGATTTTAGTTGAGTGTATA
AGGTTATTACACCACGGAAAACTTGCCATACAGTTTAGAATACATAAAGT
GAACTGTCTTTAACGCGAATggctccttaactcgaacagatTTTATGgac
ccttcagttaacaatgcttcATTACTTTACTACACCCCGGGGGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAATGA
AGTTAATCATCGCTTGTGCCTTGGTTGCTGGTAAGGCTTTCattgtcatt
tttattttttggaatatttttcgtCTGATCAACTTAATTTTTGGTCGAAC
CGAATTATTGAATATCTAAAGTTTGATTTCTTAGGCCAAAATTCTAATTC
AAATTACTCAATATGTTTTAATCTATTTCCTTGTAAATTGGCTATTGGAA
AAACCTTCGTATATACAAGAGTAGACTTTATGAATAATCCctgtttttgt
atcttttttgcAGTTGCCGCAGCTATTACCAACCCACCAATCACTGGAAC
CACACCACCAGCTATTCCATGCCCAAACTCATTATGCCAAGGAAAATATG
ACGGAAACTTTGCCCTCAAATCACACAGAAACTATTTCCTCCAATGTGTC
GGTGGAAACGCTTATTGTCAAGCCTGCTTCCCACTTTCTTTGGAATTCAG
TCAAAGATGTAACCAATGTTTGTACAACCGCAAAGACGAATGTGTCACCA
CACAAAAATGGGAGCCAGCCACCACCTTTGCTTGCCCAGACAAATGCCCA
GCCCGTGGACCAGATTTCACTGGCAACATTAAAGATGACCATGAACCACG
ACAATACGTTGCTTGCTGGAAGGGAGTTACTGTTGGATGTATCGCCTGCC
CAGGAAACTTGAAATTCAACGAGAAAGAAAATGCTTGCTTGTACGAAGGC
AAATACCTTACCGCACCATACTAAACACAATCGAACGAAGTCGTAAAACG
AAAATCTCAAAACAGAAAACTCTGTTTTTACATCTTCACTTCACTTTCAT
TCTTTAGAATCCAACCTTTCTTGCAAGCCTCTATCTTGTTGTTCACTTTC
CTGTCTAACCCTGTAACTGAAAATCTTACTCTTCTATGAATTTCCTTCCT
TctctatttttgaaattttctataatTCTATAATATGATAATTTATCTTA
TTGTAATATTTAtctaaatgtttcaaaaatattttttcatctgAAAGAAA
CTACACCTAAAAATTATAAAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072103-exon-scaffold_71-1491911889:138569..138707 | TCONS_00072103-exon-scaffold_71-1491911889:138569..138707 | Clytia hemisphaerica | exon |
TCONS_00072103-exon-scaffold_71-1510915933:138569..138707 | TCONS_00072103-exon-scaffold_71-1510915933:138569..138707 | Clytia hemisphaerica | exon |
TCONS_00072103-exon-scaffold_71-1575043694:138569..138707 | TCONS_00072103-exon-scaffold_71-1575043694:138569..138707 | Clytia hemisphaerica | exon |
TCONS_00072103-exon-scaffold_71-1491911889:143582..144342 | TCONS_00072103-exon-scaffold_71-1491911889:143582..144342 | Clytia hemisphaerica | exon |
TCONS_00072103-exon-scaffold_71-1510915933:143582..144342 | TCONS_00072103-exon-scaffold_71-1510915933:143582..144342 | Clytia hemisphaerica | exon |
TCONS_00072103-exon-scaffold_71-1575043694:143582..144342 | TCONS_00072103-exon-scaffold_71-1575043694:143582..144342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_71 | supercontig | scaffold_71:138569..144342 + |
Blast
The following BLAST results are available for this feature:
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