TCONS_00007172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007172
Unique NameTCONS_00007172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007172 ID=TCONS_00007172|Name=TCONS_00007172|organism=Clytia hemisphaerica|type=transcript|length=697bp
GTGGCTACGGTGGAGGAGGTAGTTATGGAGGGGGAGAAGGAGGTCATGGC
GGAGGTGGCTACGGAGACGGAGGTGGACATCATGGTGGTCACATGGGGCA
TCATGGTGGTGTTATGATGGGACATCACGGACATGGTCATCTGATTAGAC
CTATGCATCATTTACATGATTTCCACACACATGGTGGTCATGAAGGAGGT
GGTTATGGGGGAGGAGGATATGGTGGATATGGAGGTGGTGAAGGAGGTCA
CCATGGAGGATATGGAGGAGGCGAAGGAGGGTATGGTGACGGTGGAGGTG
GACATCATGGAGGTGGTGAAGGAGGAGGCGGCCATGGCGAAGGACATGGA
GAAGACGGTGAAGGTAGAGGTGGACATCATGGAGGTGGTGAAGGAGGAGG
TGGCCATGGCGAAGGACATGGAGAAGGTGGTCATGGTCACGGTCATCACg
atcttgaacattttcttcacGGATTGAGTCATCATGGATCACATCATCTT
GGTCGAATACATGATAGATACCCCAGTCTACACGGCTTCCATCATGGAGG
CGGCTGGGGAGGTGGACATGGTGGACATGGAGGCTATGGAGGAGGAGAAG
GTGGCTATGGAGGAGGTCACGATATAGGTGGTTACGGTGGTCATGACATA
GGAGGAGGATATGGTGGGCATGAAGGAGGGCATGGAGGACACGGAGG
Run BLAST on NCBI

transcript from alignment at sc0000074:77782..79133-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007172 ID=TCONS_00007172|Name=TCONS_00007172|organism=Clytia hemisphaerica|type=transcript|length=1352bp|location=Sequence derived from alignment at sc0000074:77782..79133- (Clytia hemisphaerica)
GTGGCTACGGTGGAGGAGGTAGTTATGGAGGGGGAGAAGGAGGTCATGGC
GGAGGTGGCTACGGAGACGGAGGTGGACATCATGGTGGTCACATGGGGCA
TCATGGTGGTGTTATGATGGGACATCACGGACATGGTCATCTGATTAGAC
CTATGCATCATTTACATGATTTCCACACACATGGTGGTCATGAAGGAGGT
GGTTATGGGGGAGGAGGATATGGTGGATATGGAGGTGGTGAAGGAGGTCA
CCATGGAGGATATGGAGGAGGCGAAGGAGGGTATGGTGACGGTGGAGGTG
GACATCATGGAGGTGGTGAAGGAGGAGGCGGCCATGGCGAAGGACATGGA
GAAGGTACGTACACATTTCTAATGTTTTCTGTTTTATATCGGATCATTAT
TTGATAGGTAACATTTAAAAGGGAGATTCTGCTTTGTAATTTTAACATAC
ATAGAGCTCTTCTCCGTGTGCTTTGAGCTATTCATTTATGAAAATTTCAT
GGCTTTTAGAATTCATTAGAGATAAGTGATGTAAAACTTTGCCGGAAAAT
GTATTTTACTCTCCACGAGATAATTTTTCAATCATTTCAGACGGTGAAGG
TAGAGGTGGACATCATGGAGGTGGTGAAGGAGGAGGTGGCCATGGCGAAG
GACATGGAGAAGGTACGTACACATTTCCAATGTTTTCTGTTTTATATCGG
ATCATTATTTGATAGTTAACATTTAAAAGGGAGATTCTGCTTTGTAATTT
TAACATACATAGAGCTCTTCTCCGTGCACTTTGAGCTATTCATTTGTGAA
AATTTCATGGCTTTTAGAATTCATTAGAGATAAGTGATGTGAAACTTTGC
CGGAAAATGTATTTCACTCTCCACGAAATAATTTTTCAACCATTTCAGAT
TTATTTGAATCGAAATTAATATTCCTCTAAAAGCAATTTTTGTCAGAAAA
TTTCTAACTAATTCGGAAGTCTTATTTTTCCTGGCTTTTAAAATCAACAT
TTTTTGTCTCGTTAGGTGGTCATGGTCACGGTCATCACGATCTTGAACAT
TTTCTTCACGGATTGAGTCATCATGGATCACATCATCTTGGTCGAATACA
TGATAGATACCCCAGTCTACACGGCTTCCATCATGGAGGCGGCTGGGGAG
GTGGACATGGTGGACATGGAGGCTATGGAGGAGGAGAAGGTGGCTATGGA
GGAGGTCACGATATAGGTGGATACGGTGGTCACGAAGGGGGTGGGTATGG
AGGTGATGGCGGCTACGGAGGCTATGGAGGAGGTGGTTACGGTGGTCATG
ACATAGGAGGAGGATATGGTGGGCATGAAGGAGGGCATGGAGGACACGGA
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004023XLOC_004023Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007172-exon-sc0000074-1575043694:78780..79133TCONS_00007172-exon-sc0000074-1575043694:78780..79133Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1575043694:78472..78543TCONS_00007172-exon-sc0000074-1575043694:78472..78543Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1575043694:77918..78118TCONS_00007172-exon-sc0000074-1575043694:77918..78118Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1575043694:77782..77851TCONS_00007172-exon-sc0000074-1575043694:77782..77851Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1510915933:78780..79133TCONS_00007172-exon-sc0000074-1510915933:78780..79133Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1510915933:78472..78543TCONS_00007172-exon-sc0000074-1510915933:78472..78543Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1510915933:77918..78118TCONS_00007172-exon-sc0000074-1510915933:77918..78118Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1510915933:77782..77851TCONS_00007172-exon-sc0000074-1510915933:77782..77851Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1491911889:78780..79133TCONS_00007172-exon-sc0000074-1491911889:78780..79133Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1491911889:78472..78543TCONS_00007172-exon-sc0000074-1491911889:78472..78543Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1491911889:77918..78118TCONS_00007172-exon-sc0000074-1491911889:77918..78118Clytia hemisphaericaexon
TCONS_00007172-exon-sc0000074-1491911889:77782..77851TCONS_00007172-exon-sc0000074-1491911889:77782..77851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:77782..79133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.111302	0	0	0	0	0	0.0860671	0	0.134936	0	0	0.654054	0.431168	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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