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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071839 ID=TCONS_00071839|Name=TCONS_00071839|organism=Clytia hemisphaerica|type=transcript|length=784bp
ccgatttCTCCATAAAGCTTCAGAAAAACGCATCAAGCGAATGAGTGTTT
CTAATTCAACCAAAAGTCGTAGCACGTATCATAAACGAGTTGCAAAAACA
TTGGCTCTTATGTCTATAGTTGTGTCTGTTTGTTACACTCCTATGGCTGT
GTCTTTTGTCGTGTCAGGTCTTTTCTTATTATATCGCTACCCTCACATGG
AAGTCATACAAATCATCATACCATGGTCACAAATGGTTATGACTTTAAAC
TCTGCATTGAACTCTTTCATTTATATCGTCCgaacaaagaaaatgttgaa
TCTGTATAAAAGGGTgttgaaaagattttgttgTCGTGTTTTTGGCAGAG
AGAATAAAGTCAATCGTACTGTTGTCATGAGTTTCGAAATGTCAACAACA
GCTAGGCGTAATCAGAGGACAGAATCCACGAACCATGGCAGTGATCGATT
TTGAATGACTCTACTCGAAATTATCCTTCCAACGATGAACGATATCATTC
AATCACTGGAATCATATTTTGAACTTAGAttgcttttgatttttggtcAG
CCGATTCCATGTGCCAGTCACCTCCAGtagtagtaagtaagtttgcgacc
gcagtcgagggcgaccagAAGGCTCCCTTTTTgtatagctatctacccga
aggtagggccACTCCTTTCCCTAGAAACGCATGGAGTCACCTCCAAGCCC
ATGGGAATGTTCTTCAGCCAGTAGGGATAGAAAAGGAGGACATTGTCAGA
TGAGAGTATTGGATGGAGATCTCGAACTGAGGAG Run BLAST on NCBI transcript from alignment at scaffold_64:42600..45649+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071839 ID=TCONS_00071839|Name=TCONS_00071839|organism=Clytia hemisphaerica|type=transcript|length=3050bp|location=Sequence derived from alignment at scaffold_64:42600..45649+ (Clytia hemisphaerica)
ccgatttCTCCATAAAGCTTCAGAAAAACGTAAGTAAAGTTCAGCTCCTA
CCTTATAAGAAGAAAtggcggaatttattttggcgatttaatgAGActtc
taaatttggcgagaattaattttggcaaacgacccattttttgttgaata
tttaagggctctgaccatagtgaatttttaatatttgccacttacaaaat
gTAAAGTTCTACTTGCAgtagcccacaaaactgtggcatgttatacatat
tctgttaggccaattatccgtgagtctgaaaatttaagaatcgcaatgaa
aaactttgatgaaaaagaatatgaagacttttgcgaagaagagtatttca
actttgaagagcttatctatcttcgatgaagaaaaaacattttgaaaatc
tttttgcggtagatggtatcttttatcgaactaaaattattttttcggaa
aatttttctgaaagcttatttgcttcaaaatcttaaaaatagtgcttttt
gaccaattttccatcccaatttttcatagaaaaacagccataacttttga
tgcatttatttagaaaattttttttataaaaaaaggtgatgcaacatatt
attaccgtctttttaaagttcataacgtcatttttgctattaaattctta
attactcttaagggattgaTTAAAAaccaatttataaaggcaattctttg
ttgaaagtgtaaaagaacctaaaacataacttttatgctcaaatactaaa
atcaattttccgactatggtcagagcccttaagggctctgaccatagtga
atttttcataattgccgtgtttaaaatgtgttttctgactgatgtaacca
acaaaactatggcatgttatacattttctgttagacaaactattcctgaa
attgaaaattcaaaaattgcattgaaaaaaatcgatgaagaagaaaatga
agacttttacgaggaagagtatttcaactttgaagagcttagtttcggcg
aagaaaaaacatttcgaaaaaattttcgcagtagatggtgtatcttttac
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNtaaaggcaattctttgttaaaagtgt
taaagaatttaaaacataacttttatgttcagatactaaaatcaattttc
tgactatggtcagagcccttaagcttAAAAAGGATGAAAAAGGGGATTTT
CGCCGagatttctttccgccaaaatttattctcTTAAGGTATTTCCCGCC
ATTAACCCTCATGTATTTAAATTCAATCATTAGTAGtaatttgtattaaa
aattaACTAAAATCTCACAGAGCTGTAATCCTATATTGTGAAGAATAACT
AAAAACTAATACAGTCAACTCGCTCTTATTCGAACTCTTTTATTCGAACC
TTTCTGTAATTTGATTGGTCCTCTCAGCTGAAAATTAATCAAATTCTCTC
AGAAATTATCTACTcattctataattcgaaaaaaattcttgaactcttga
aaatcgaatcagAGCAATGAGTCAACTGTATCTACCGTACATTAGGGCCA
GCgcaaaccagtccaacatttcattcaacatgatttttcaatgttgggta
aaaaatgtttgatggaaaaacttgcgttgGATGAAGCGAAAATCAAGGCC
GAGGCAAActgatccaacatttcatccgacATGACTTGCGGAAAAAAAAt
gatggcgatcaaacttcatccaacaccgtccaacacgatttttttcttct
ttatttgaattttcatttttttccaaaaatttaaattgacGCAAAttgat
ccaacatttcatccaactgaagtctaatttgttcgaattacagaaaggtt
TGAATCATATAAAGCATCTGACGAGGGTTTCAATTTGACAGAtactgaga
attagttcgaattatagcgaCATTCGGATAATAGAAGCTCGAATTAGTGA
ATGTCCACTGAGTAGATCGGAACAGAAATTTTACCCTGGCTCCTGTACGA
TTTACATTTCACTAATtagtaatattttattttctatcatTTTAGGCATC
AAGCGAATGAGTGTTTCTAATTCAACCAAAAGTCGTAGCACGTATCATAA
ACGAGTTGCAAAAACATTGGCTCTTATGTCTATAGTTGTGTCTGTTTGTT
ACACTCCTATGGCTGTGTCTTTTGTCGTGTCAGGTCTTTTCTTATTATAT
CGCTACCCTCACATGGAAGTCATACAAATCATCATACCATGGTCACAAAT
GGTTATGACTTTAAACTCTGCATTGAACTCTTTCATTTATATCGTCCgaa
caaagaaaatgttgaaTCTGTATAAAAGGGTgttgaaaagattttgttgT
CGTGTTTTTGGCAGAGAGAATAAAGTCAATCGTACTGTTGTCATGAGTTT
CGAAATGTCAACAACAGCTAGGCGTAATCAGAGGACAGAATCCACGAACC
ATGGCAGTGATCGATTTTGAATGACTCTACTCGAAATTATCCTTCCAACG
ATGAACGATATCATTCAATCACTGGAATCATATTTTGAACTTAGAttgct
tttgatttttggtcAGCCGATTCCATGTGCCAGTCACCTCCAGtagtagt
aagtaagtttgcgaccgcagtcgagggcgaccagAAGGCTCCCTTTTTgt
atagctatctacccgaaggtagggccACTCCTTTCCCTAGAAACGCATGG
AGTCACCTCCAAGCCCATGGGAATGTTCTTCAGCCAGTAGGGATAGAAAA
GGAGGACATTGTCAGATGAGAGTATTGGATGGAGATCTCGAACTGAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071839-exon-scaffold_64-1491911889:42600..42628 | TCONS_00071839-exon-scaffold_64-1491911889:42600..42628 | Clytia hemisphaerica | exon |
| TCONS_00071839-exon-scaffold_64-1510915933:42600..42628 | TCONS_00071839-exon-scaffold_64-1510915933:42600..42628 | Clytia hemisphaerica | exon |
| TCONS_00071839-exon-scaffold_64-1575043694:42600..42628 | TCONS_00071839-exon-scaffold_64-1575043694:42600..42628 | Clytia hemisphaerica | exon |
| TCONS_00071839-exon-scaffold_64-1491911889:44895..45649 | TCONS_00071839-exon-scaffold_64-1491911889:44895..45649 | Clytia hemisphaerica | exon |
| TCONS_00071839-exon-scaffold_64-1510915933:44895..45649 | TCONS_00071839-exon-scaffold_64-1510915933:44895..45649 | Clytia hemisphaerica | exon |
| TCONS_00071839-exon-scaffold_64-1575043694:44895..45649 | TCONS_00071839-exon-scaffold_64-1575043694:44895..45649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:42600..45649 + |
Blast
The following BLAST results are available for this feature:
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