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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071688 ID=TCONS_00071688|Name=TCONS_00071688|organism=Clytia hemisphaerica|type=transcript|length=1197bp
AGGAGAAATTTCTgaattgaataaattttgatattgCATATTTATTTAAC
TCGTTTTTCAAAAGCTACTTGTGGAGCTCAATTTTCatataaatttgaaa
caaaaagaatgGAAATATAATATATGTAATAATTATATAAACAATTTACA
ACTTGAATACTAAATAATAATCAtaaaattcgaacaaaaaatataaatca
taaaaaataatgTCTTTCGTCCAATCAGCAACTGTTTCCCACAAAACATC
CGGTAAATATCTAGTTTGATCACACTATTGAAATAAATTTCcgaaaattt
ataaaaagaattCTCAGACTGGAATTTAATTGATAGTTGATTACTCCAAT
ATTGATATTTCCCAGACTCAAGAGTTAGGCTGGTTTAGGAAATACGTCTT
TCTTGGGATCTCGGTGCCAAATTCTTCGTCAATCAAAGCTAAAGCACATC
GGCAAGCATTTCATGATATCTTAATGGTAATAAATTTCTctacaaaattt
tctttaatctttaattttattttttcttatcagCAACAAGCATAAGAAGT
GTCTTCTAATTTTAATATATctttaaaagtgtttttgttttgagattttt
cactTATGATACTGTTTCCTCAACATTTCGTTTGTTTCTTCAAAAGTTTC
CTCTTTGagcttctttttcaaaatcaatgCTTGTTGTCGTATTAACATTT
CATGTCACTTTTACAGAATTTTGCGAAACAACCGTAGATGTTGAACGTCG
ATTTAGACAGCGGCATAGCCCGATAAATTCGCCTCCAAATCTCAAACAAA
ACTACCGATGACGTCCATCCGATGTATTTTTGACGAACAAATCTCTCCGT
CAataattttcctcatttttattttttgttcttgtaaataacaaaaaaaa
gaatcttCACGGTTCCCAACATCACGTAAATGCTCTTCACACTTGAGCTG
TCCTTAAATTACGTTGCGGAGTACCGTACTGATCGACGCCGTTATAACCG
GCCCCGTTGGGTCCACCTTGGTTAACAAAACCACCGTTTTCTTGAGAAAT
TAAGCCCTCTTGTGCACCAGGAACGGCAGCTCTCCAATAAGCCTCTAAGA
ATTCTCCTAAATGCTCACACGCATCTTCCAATTGGTTCTCATCCAACACA
ACATCAAACATTTCCTGCAGAATAGAAAGATTTAAATTAActctttt Run BLAST on NCBI transcript from alignment at scaffold_63:814420..815699+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071688 ID=TCONS_00071688|Name=TCONS_00071688|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at scaffold_63:814420..815699+ (Clytia hemisphaerica)
AGGAGAAATTTCTgaattgaataaattttgatattgCATATTTATTTAAC
TCGTTTTTCAAAAGCTACTTGTGGAGCTCAATTTTCatataaatttgaaa
caaaaagaatgGAAATATAATATATGTAATAATTATATAAACAATTTACA
ACTTGAATACTAAATAATAATCAtaaaattcgaacaaaaaatataaatca
taaaaaataatgTCTTTCGTCCAATCAGCAACTGTTTCCCACAAAACATC
CGGTAAATATCTAGTTTGATCACACTATTGAAATAAATTTCcgaaaattt
ataaaaagaattCTCAGACTGGAATTTAATTGATAGTTGATTACTCCAAT
ATTGATATTTCCCAGACTCAAGAGTTAGGCTGGTTTAGGAAATACGTCTT
TCTTGGGATCTCGGTGCCAAATTCTTCGTCAATCAAAGCTAAAGCACATC
GGCAAGCATTTCATGATATCTTAATGGTAATAAATTTCTctacaaaattt
tctttaatctttaattttattttttcttatcagCAACAAGCATAAGAAGT
GTCTTCTAATTTTAATATATctttaaaagtgtttttgttttgagattttt
cactTATGATACTGTTTCCTCAACATTTCGTTTGTTTCTTCAAAAGTTTC
CTCTTTGagcttctttttcaaaatcaatgCTTGTTGTCGTATTAACATTA
CATGTCACTTTTACAGAATTTTGCGAAACAACAGTAGNGAagcttctttt
tcaaaatcaatgtTCATTGTCGTATTAACATTTCATGTCACTTTTACAGA
ATTTTGCGAAACAACCGTAGATGTTGAACGTCGATTTAGACAGCGGCATA
GCCCGATAAATTCGCCTCCAAATCTCAAACAAAACTACCGATGACGTCCA
TCCGATGTATTTTTGACGAACAAATCTCTCCGTCAataattttcctcatt
tttattttttgttcttgtaaataacaaaaaaaagaatcttCACGGTTCCC
AACATCACGTAAATGCTCTTCACACTTGAGCTGTCCTTAAATTACGTTGC
GGAGTACCGTACTGATCGACGCCGTTATAACCGGCCCCGTTGGGTCCACC
TTGGTTAACAAAACCACCGTTTTCTTGAGAAATTAAGCCCTCTTGTGCAC
CAGGAACGGCAGCTCTCCAATAAGCCTCTAAGAATTCTCCTAAATGCTCA
CACGCATCTTCCAATTGGTTCTCATCCAACACAACATCAAACATTTCCTG
CAGAATAGAAAGATTTAAATTAActctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071688-exon-scaffold_63-1491911889:814420..815115 | TCONS_00071688-exon-scaffold_63-1491911889:814420..815115 | Clytia hemisphaerica | exon |
| TCONS_00071688-exon-scaffold_63-1510915933:814420..815115 | TCONS_00071688-exon-scaffold_63-1510915933:814420..815115 | Clytia hemisphaerica | exon |
| TCONS_00071688-exon-scaffold_63-1575043694:814420..815115 | TCONS_00071688-exon-scaffold_63-1575043694:814420..815115 | Clytia hemisphaerica | exon |
| TCONS_00071688-exon-scaffold_63-1491911889:815199..815699 | TCONS_00071688-exon-scaffold_63-1491911889:815199..815699 | Clytia hemisphaerica | exon |
| TCONS_00071688-exon-scaffold_63-1510915933:815199..815699 | TCONS_00071688-exon-scaffold_63-1510915933:815199..815699 | Clytia hemisphaerica | exon |
| TCONS_00071688-exon-scaffold_63-1575043694:815199..815699 | TCONS_00071688-exon-scaffold_63-1575043694:815199..815699 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:814420..815699 + |
Blast
The following BLAST results are available for this feature:
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