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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071682 ID=TCONS_00071682|Name=TCONS_00071682|organism=Clytia hemisphaerica|type=transcript|length=3616bpRun BLAST on NCBI protein sequence of TCONS_00071682-protein >TCONS_00071682-protein ID=TCONS_00071682-protein|Name=TCONS_00071682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp MAQIGHRALKNVLRTVKPNLLSRTYSSGAPTAKLLINGEFIDSKTDNWIPRun BLAST on NCBI transcript from alignment at scaffold_63:751548..786412+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071682 ID=TCONS_00071682|Name=TCONS_00071682|organism=Clytia hemisphaerica|type=transcript|length=34865bp|location=Sequence derived from alignment at scaffold_63:751548..786412+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:751548..786412+ >TCONS_00071682 ID=TCONS_00071682|Name=TCONS_00071682|organism=Clytia hemisphaerica|type=CDS|length=23715bp|location=Sequence derived from alignment at scaffold_63:751548..786412+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071682 vs. Swiss-Prot (Human)
Match: MMSA (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2) HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0 Identity = 329/497 (66.20%), Postives = 398/497 (80.08%), Query Frame = 1
Query: 277 PTAKLLINGEFIDSKTDNWIPVTNPATNEVVSMCPETTPQEMKAAADSASLAFETWKDSSILARQSIMFKYQQKIKDNMDILAKSITLENGKTFSDAEGELLRGLQVVEHACSITSLQLGETMPGISKDMDTHSYRVPLGVCSGITPFNFPAMIPLWMFPMALVCGNTFIMKPSEQDPGAAMLLCEMAMDCGIPPGVLNVIHGTKPAVDFLCTDPSIRAISFVGSDHAGQYIYETGSEHGKRVQSNMGAKNHGIVLSDANKESSLNQLVGAAFGAAGQRCMALSTAIFVGEAQKWIPDLVERANKLVVNAGHEPNTDVGPMITPAAKERCERLIQSGIDRGANCILDGRGHVVPGYENGNFVGPTILTNVTPDMECYTEEIFGPVLIILNADNLDDAIEIINNNKYGNGTAIFTNSGSAARKFTQEVDVGQIGVNVPIPVPLPMFSFTGSRGSFRGDLNFYGKAGVQFYSQWKTVTSLWREDDATDKKAQVSFPRMG 1767
PT KL I G+F++SK+D WI + NPATNEV+ P+ T EM AA S AF W D+S+L+RQ ++ +YQQ IK+N+ +AK ITLE GKT +DAEG++ RGLQVVEHACS+TSL +GETMP I+KDMD +SYR+PLGVC+GI PFNFPAMIPLWMFPMA+VCGNTF+MKPSE+ PGA MLL ++ D G P G LN+IHG AV+F+C P I+AISFVGS+ AG+YI+E GS HGKRVQ+NMGAKNHG+V+ DANKE++LNQLVGAAFGAAGQRCMALSTA+ VGEA+KW+P+LVE A L VNAG +P D+GP+ITP AKER LI SG GA+ +LDGR V GYENGNFVGPTI++NV P+M CY EEIFGPVL++L + LD+AI+I+NNN YGNGTAIFT +G+ ARK+ VDVGQ+GVNVPIPVPLPMFSFTGSR SFRGD NFYGK G+QFY+Q KT+TS W+E+DAT V P MG
Sbjct: 38 PTVKLFIGGKFVESKSDKWIDIHNPATNEVIGRVPQATKAEMDAAIASCKRAFPAWADTSVLSRQQVLLRYQQLIKENLKEIAKLITLEQGKTLADAEGDVFRGLQVVEHACSVTSLMMGETMPSITKDMDLYSYRLPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKPSERVPGATMLLAKLLQDSGAPDGTLNIIHGQHEAVNFICDHPDIKAISFVGSNKAGEYIFERGSRHGKRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVEHAKNLRVNAGDQPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRKIKVKGYENGNFVGPTIISNVKPNMTCYKEEIFGPVLVVLETETLDEAIQIVNNNPYGNGTAIFTTNGATARKYAHLVDVGQVGVNVPIPVPLPMFSFTGSRSSFRGDTNFYGKQGIQFYTQLKTITSQWKEEDATLSSPAVVMPTMG 534 The following BLAST results are available for this feature:
BLAST of TCONS_00071682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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