|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071281 ID=TCONS_00071281|Name=TCONS_00071281|organism=Clytia hemisphaerica|type=transcript|length=1570bp
ttgagaaaaaaacttaaaTGTCATCATAAAAATGTGATTAAACACAGTAT
CTAGAACAATTTTGTATACATTTGTTATAAAATGAATTGATTGAAAGAGG
GAGGAAAATCGAAATATTTTATTCACCTGAACATTCGATTGAATATCAAG
GAATTTTTGGACCCACATTATATATGGTAATGTCAAAGAATACATGTGTA
GTTTTAATTTTGACCGTATTATTTGTTATCCTGAACTTTGTGTATAGTAT
TTTGATCATCGAGAAAGTAATTGATCAGCATTTATGGTGGATTATGATCA
CGTTGACTTTGTTCGTCAGTACACCTTGGATTACAATGCAATGCTATTGG
GTTTACTTTAAGGACAAAAATAAGGATGTTATCCTCAGTCACGAAGAACC
ACTGCTAAACGTTTTGTATAATTGAGAGAGGACAAACCATGGCGAAGGAT
TAGGCTAAATCTATAGAATTACGTCAAAAATGATCAGAGATGCATTTACA
TTTTTAGCATGACACGAAGGGAAATCGAGCTGACCTCGATGCTAGCCTTT
ATGGACAATACGAAGTAATTGTCTGGTAATGCGTTTTAAGAGATGTCTGG
ACTTGTCTAGTGAAAATAGAGAAGAAAAACTGGTGAATGAAACTGGTGAA
TGATATTGCTACTTGTCTCATTTAAAGCACGTGAATTCAAAACACAGCTT
TTATTTCAATACGATACCAACGTCATTATCTCTAATACAAACATCACGGA
TTAACCACCTCAAATGTCAGATGTGACAATAAAATAACATTGAATTTGGA
ATTGGTACTGGAAAATAAGAGTTAtttcatctaatgtttccagttcaccc
aaatagagacttatacgcATGCGCAATTTATCGTTCTTGTCACTGACCAA
GGTCAGGGTTTGGGATGGCCAAATATATAtggttctttgatagttagggt
ttgtcgttctttttagatggtctggaaaTGGTAGATGAACAGTCTCATAA
TGGCAATAATTGTACGAgaaaagaataactttttaataGAACAATACATG
ATGCAATTTACGTAGTGGTCGAAACATTTATTGGTATTGGTGTTTAATCA
ACCCTCTGGAGGAAAATCATATCTTATCAGTATAAGTCGAACCACAGTAc
taatatttgaaaatgaaaaattggtcaacaTCATACAATACGCATAAAAC
CTTTCAAGGATATAACTCAAATGGATTTGCAGGTGaccctgaaaatattt
ctcTAACCATCCCATTCCCAGACTTTTACAATTTACAGATTGTCAAACAA
ATaatataaagatttttttaccattcatatattttataatttgacaaaaa
aaatataataaaacaaaaaattatgtataTAAACGTAAAGATTCCATCAA
AAAATAATACATATAAATACCTGTGTTGTAACTAAATTAACCCTTCCTTC
TAGCAAAATTGGTCCCAATTCCAAAGGAACTAAAACTTAAGGGGATAAAG
GACTGACCATGCTATAAAACATCTTATAGCATGTTGACATCCTCTGGCTG
TTTGTAGAGGTGTACGCGAG Run BLAST on NCBI transcript from alignment at scaffold_60:987403..989566+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071281 ID=TCONS_00071281|Name=TCONS_00071281|organism=Clytia hemisphaerica|type=transcript|length=2164bp|location=Sequence derived from alignment at scaffold_60:987403..989566+ (Clytia hemisphaerica)
ttgagaaaaaaacttaaaTGTCATCATAAAAATGTGATTAAACACAGTAT
CTAGAACAATTTTGTATACATTTGTTATAAAATGAATTGATTGAAAGAGG
GAGGAAAATCGAAATATTTTATTCACCTGAACATTCGATTGAATATCAAG
GAATTTTTGGACCCACATTATATATGGTAATGTCAAAGAATACATGTGTA
GTTTTAATTTTGACCGTATTATTTGTTATCCTGAACTTTGTGTATAGTAT
TTTGATCATCGAGAAAGTAATTGATCAGCATTTATGGTGGATTATGATCA
CGTTGACTTTGTTCGTCAGTACACCTTGGATTACAATGCAATGCTATTGG
GTTTACTTTAAGGACAAAAATAAGGGTAcgtatacacccctgtctcaata
atCTAAAGACAATGAAAACTTTTCATACCGATGGGGACCCTTTATACCTC
TGCCTCTATAACCCATGCTCGTTGAAAAACAATTAAATACTCCGttttat
tattcaaatcttttgaTGAGAATAACTGAAAATGTTCACAAACCCCACTT
AATTTCCTCCAATTATTGCCCCGCTGAAATgatcatataaaaaatattgt
tatatttttttccatgATCCTAACTGaagtttttgaaattcatttcCCCA
AGTCATAATAAATATGAGAATATTGATCcctatcgagtttcagtccgtta
tttttacccccactagcTGAAAACCACTAGTTCTGTGAGAAAAGGGGAAG
GTGTGTGTTATGATGTACCCCGGTAAGAATATTATTTCactaaaaactaa
actaaacaaGCACAAATACATGGATACCATTTATTAATTgcctatttttt
tcaaatgtgtTGGTTTTTGTTGGGGTTGTGCATTATACTTCTTCTCTTGT
CCGTATAAATATATATGATATCATGTAAAATGTGGAATTCCAATTATTTc
tatatttatctttatttagATGTTATCCTCAGTCACGAAGAACCACTGCT
AAACGTTTTGTATAATTGAGAGAGGACAAACCATGGCGAAGGATTAGGCT
AAATCTATAGAATTACGTCAAAAATGATCAGAGATGCATTTACATTTTTA
GCATGACACGAAGGGAAATCGAGCTGACCTCGATGCTAGCCTTTATGGAC
AATACGAAGTAATTGTCTGGTAATGCGTTTTAAGAGATGTCTGGACTTGT
CTAGTGAAAATAGAGAAGAAAAACTGGTGAATGAAACTGGTGAATGATAT
TGCTACTTGTCTCATTTAAAGCACGTGAATTCAAAACACAGCTTTTATTT
CAATACGATACCAACGTCATTATCTCTAATACAAACATCACGGATTAACC
ACCTCAAATGTCAGATGTGACAATAAAATAACATTGAATTTGGAATTGGT
ACTGGAAAATAAGAGTTAtttcatctaatgtttccagttcacccaaatag
agacttatacgcATGCGCAATTTATCGTTCTTGTCACTGACCAAGGTCAG
GGTTTGGGATGGCCAAATATATAtggttctttgatagttagggtttgtcg
ttctttttagatggtctggaaaTGGTAGATGAACAGTCTCATAATGGCAA
TAATTGTACGAgaaaagaataactttttaataGAACAATACATGATGCAA
TTTACGTAGTGGTCGAAACATTTATTGGTATTGGTGTTTAATCAACCCTC
TGGAGGAAAATCATATCTTATCAGTATAAGTCGAACCACAGTActaatat
ttgaaaatgaaaaattggtcaacaTCATACAATACGCATAAAACCTTTCA
AGGATATAACTCAAATGGATTTGCAGGTGaccctgaaaatatttctcTAA
CCATCCCATTCCCAGACTTTTACAATTTACAGATTGTCAAACAAATaata
taaagatttttttaccattcatatattttataatttgacaaaaaaaatat
aataaaacaaaaaattatgtataTAAACGTAAAGATTCCATCAAAAAATA
ATACATATAAATACCTGTGTTGTAACTAAATTAACCCTTCCTTCTAGCAA
AATTGGTCCCAATTCCAAAGGAACTAAAACTTAAGGGGATAAAGGACTGA
CCATGCTATAAAACATCTTATAGCATGTTGACATCCTCTGGCTGTTTGTA
GAGGTGTACGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071281-exon-scaffold_60-1491911889:987403..987777 | TCONS_00071281-exon-scaffold_60-1491911889:987403..987777 | Clytia hemisphaerica | exon |
| TCONS_00071281-exon-scaffold_60-1510915933:987403..987777 | TCONS_00071281-exon-scaffold_60-1510915933:987403..987777 | Clytia hemisphaerica | exon |
| TCONS_00071281-exon-scaffold_60-1575043694:987403..987777 | TCONS_00071281-exon-scaffold_60-1575043694:987403..987777 | Clytia hemisphaerica | exon |
| TCONS_00071281-exon-scaffold_60-1491911889:988372..989566 | TCONS_00071281-exon-scaffold_60-1491911889:988372..989566 | Clytia hemisphaerica | exon |
| TCONS_00071281-exon-scaffold_60-1510915933:988372..989566 | TCONS_00071281-exon-scaffold_60-1510915933:988372..989566 | Clytia hemisphaerica | exon |
| TCONS_00071281-exon-scaffold_60-1575043694:988372..989566 | TCONS_00071281-exon-scaffold_60-1575043694:988372..989566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:987403..989566 + |
Blast
The following BLAST results are available for this feature:
|
