TCONS_00007117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007117
Unique NameTCONS_00007117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007117 ID=TCONS_00007117|Name=TCONS_00007117|organism=Clytia hemisphaerica|type=transcript|length=472bp
GTAACTTTGTTTTTTAAGTGATTTGTGGCTTTAAAAAAAGCCGTTTTTTT
ATTCCAACAAATCTATTTGCTGCTGGTGTATTTTGTGACAGCTTTGGTTC
CTTCTGAGACAGCGTGTTTGGCCAACTCCCCTGGAAGCAAGAGACGAACA
GATGTTTGAACTTCACGAGATCCCATagtcattcttttgttttggatgCA
AAGTCTTGATGCTTGACCAGCCAATCGTTCAAAGATGTCGTTGACGAAAG
AGTTCATGATGCTCATGGATTTGCTTGAGATTCCAACATCAGGGTGAACT
TGTTTCAAGACTTTGTAGATGTACATGGTGTAAGATTCACGTCTTTTGCT
TCTTCGTTTGGTTGCTTTGGCACCACCTTTTCGTCCTCCTTTCTTCATAG
CTTTGCTTGCTTTTTTTGGGCTTGCAGCTCTTGATGCAGGTTTCTTTGGA
CTTCCAGCCATTGCTTTGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00007117-protein

>TCONS_00007117-protein ID=TCONS_00007117-protein|Name=TCONS_00007117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
FKAMAGSPKKPASRAASPKKASKAMKKGGRKGGAKATKRRSKRRESYTMY
IYKVLKQVHPDVGISSKSMSIMNSFVNDIFERLAGQASRLCIQNKRMTMG
SREVQTSVRLLLPGELAKHAVSEGTKAVTKYTSSK
Run BLAST on NCBI

transcript from alignment at sc0000073:436593..437064

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007117 ID=TCONS_00007117|Name=TCONS_00007117|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0000073:436593..437064 (Clytia hemisphaerica)
TTTTCAAAGCAATGGCTGGAAGTCCAAAGAAACCTGCATCAAGAGCTGCA
AGCCCAAAAAAAGCAAGCAAAGCTATGAAGAAAGGAGGACGAAAAGGTGG
TGCCAAAGCAACCAAACGAAGAAGCAAAAGACGTGAATCTTACACCATGT
ACATCTACAAAGTCTTGAAACAAGTTCACCCTGATGTTGGAATCTCAAGC
AAATCCATGAGCATCATGAACTCTTTCGTCAACGACATCTTTGAACGATT
GGCTGGTCAAGCATCAAGACTTTGcatccaaaacaaaagaatgactATGG
GATCTCGTGAAGTTCAAACATCTGTTCGTCTCTTGCTTCCAGGGGAGTTG
GCCAAACACGCTGTCTCAGAAGGAACCAAAGCTGTCACAAAATACACCAG
CAGCAAATAGATTTGTTGGAATAAAAAAACGGCTTTTTTTAAAGCCACAA
ATCACTTAAAAAACAAAGTTAC

Coding sequence (CDS) from alignment at sc0000073:436593..437064

>TCONS_00007117 ID=TCONS_00007117|Name=TCONS_00007117|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000073:436593..437064 (Clytia hemisphaerica)
TTCAAAGCAATGGCTGGAAGTCCAAAGAAACCTGCATCAAGAGCTGCAAG
CCCAAAAAAAGCAAGCAAAGCTATGAAGAAAGGAGGACGAAAAGGTGGTG
CCAAAGCAACCAAACGAAGAAGCAAAAGACGTGAATCTTACACCATGTAC
ATCTACAAAGTCTTGAAACAAGTTCACCCTGATGTTGGAATCTCAAGCAA
ATCCATGAGCATCATGAACTCTTTCGTCAACGACATCTTTGAACGATTGG
CTGGTCAAGCATCAAGACTTTGcatccaaaacaaaagaatgactATGGGA
TCTCGTGAAGTTCAAACATCTGTTCGTCTCTTGCTTCCAGGGGAGTTGGC
CAAACACGCTGTCTCAGAAGGAACCAAAGCTGTCACAAAATACACCAGCA
GCAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003985XLOC_003985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007117-proteinTCONS_00007117-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007117-exon-sc0000073-1491911889:436593..437064TCONS_00007117-exon-sc0000073-1491911889:436593..437064Clytia hemisphaericaexon
TCONS_00007117-exon-sc0000073-1510915933:436593..437064TCONS_00007117-exon-sc0000073-1510915933:436593..437064Clytia hemisphaericaexon
TCONS_00007117-exon-sc0000073-1575043694:436593..437064TCONS_00007117-exon-sc0000073-1575043694:436593..437064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:436593..437064 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51565	0.861985	2.17648	1.66827	14.2496	17.5529	4.01455	1.40458	1.73874	2.89147	2.49527	1.38032	0.717723	0.106949	0.53619	0.510736	0	0.430528	0.164605	0.450166	0	0.572553	0.15467	0	14.7602	28.8552	0.369939	0.197405	0.449173	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Blast
[Close]
BLAST of TCONS_00007117 vs. Swiss-Prot (Human)
Match: H2B1O (Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 6.203e-51
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = -3 
Query:   66 RESYTMYIYKVLKQVHPDVGISSKSMSIMNSFVNDIFERLAGQASRLCIQNKRMTMGSREVQTSVRLLLPGELAKHAVSEGTKAVTKYTSSK 341
            +ESY++Y+YKVLKQVHPD GISSK+M IMNSFVNDIFER+AG+ASRL   NKR T+ SRE+QT+VRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:   35 KESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
The following BLAST results are available for this feature:
BLAST of TCONS_00007117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2B1O6.203e-5181.52Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO ... [more]
back to top