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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000901 ID=TCONS_00000901|Name=TCONS_00000901|organism=Clytia hemisphaerica|type=transcript|length=3140bp
caaaaaataaataaaaaagtttataaCGAGACTATTAATCTATAATGTTT
CCAGACCATCTAANTTTATAACGAGACTATTAATCTATAATgtttccaga
ccatctaaaaagaacgacaaatttcttAAGAAcgacaaattcaacaaatt
tcaTATCACAgtcccgaccgaaagtgactgtatcacccctacagattcat
ccctctttgtttatcacaggAATTAAATGCGTGTGGTTTAAAAACGGCTA
ATTACGTATgcgtataagtctctatttACGTGTAACTCTAATTAATCCAT
CATCATAAATACAAGTAAAATTTTAAGGTATCTTACTCAAACTTGTGCAA
ATGTTTTTCCCTCAATCGAATGTCAACATTTTAAATGTTGATCAGTTTTA
TTATGGTGAAAATTAATGGTAATATCAACATAATAAATCCTGGGGCGAGG
GGTTTACCAGCGCTGGTTTGTTTGTTGTCAGAGACGTTTGATTCTAAATT
CGCTATTTCCAGGTTTGCAATCGATGCTGTTGCCATAAGGGCATGGTAAG
ACTTAATAGATTGCCTCGGTTGAATGCTTAGGAATAGCTCAGGACCTTTT
GTAATTGACGTTGACGGTACATAAGCATTTGGAGAACTTTCGCTGGCAAT
AACTTCTGGTGAACTTTGAGTGGTCTGGATGTTTTCTTGTGAACTTGAAG
GTTGAACAGAGGATTGTGTTTTTGATGACGAAGACTCCATAGTTTCCAAA
ATGAACATAGGTGTAGAAATTGCAATTTGACTGCTGGTTGATTTCGGGAC
TGTTCTTATCGGGACTTGATGTTTATGCGAGCTAGATAGTGGAATACTGC
TTGTAGACAATGTGGGTTGGGCATGTGTTGATGTTCCAGCAGTTAAGGAC
TTATTAAGACCTGCTGCTGTTTGATTGAGTTCATCAAGAAATTGACATGT
GTTGTTGAAACTGGTGCACAGGCAAGTCAACGGGAAGTTTGAATAGGTCT
TTGCTGTTTCTGAACAGACCATGGTGAAATTAGCGTTTCTTTGAAGTGAT
TGACATGTACTGTTTAAATGTTGGCAATTGCAATTTGATTCTTTAATAAT
ATCAACATTTATTCTTGTTCTACTAATGTCTGTATTGAAGACATTACAAA
ATTGCATTAAAAGTTCTTGCAATTGATTTAATGGTTGTGGTAGACTTGTA
GTACTAAGTGATTGAGTTACCGAGGATGCATGGATATTCTGTATAAGGGT
AGTGTGTTCCGGTTGAAGCACAATCGTGGAAATGGTTGGGTGGTCTAGAG
TAGTTTGAAAAGAGCTTACTGGGAtttgaaaagttgattttggtgATTGG
GAATCAATCATCGAGGTTGATGGAACgatattttttgttgattgGTCTGA
TAAAAGATCTAAACAAGTATTgggaaaattgaaacattcgCACATGAGCG
GGGAgcgaattttcaagattttaatttttgttgtcTCACATAAAGATGGA
AAGTTTATTGTCGAATTTTGTAGTCCTACACAAACTTCGTTCATCACTTG
ACAATTGCATGTTGATGGATCAATTCGAGGCATTGGAAATCTTTGTCTAG
CCAAATCCATGTTGAAAGCAATGCAGTATTCTGATAGGAAAGGTGGTGTT
GTGGTGGTTATGGAAGATGTTGGTTCTATTAATGGAGATACCGGTGTGAC
TCTAATGGTGTCTGATTGTTTTGACGCAATTATTTGTTGGTCAATCGACG
ACGTTTGGTTTATAGTAACTGTTGTAATGAGGATTGTTGCAGTCATTTCA
GTTTCACTAGTATTTTCTTGGCTTGGTGAAGGTGTCATTGTTGAAGATAC
TGGTGTGGCTCCAATGGTGTTTGATTGACTTGGAGAATTGATTTGTTGGT
CAATCGGTGATGTTTGTTTGATTGTAGCTGTTGTAAAGTAGATTGTGGCT
ACTGTTTTAGTTTCAATGATGTTACCTTGGCTTGGTGAAGGCGTTAGTGG
AGAATCTACAATTATTGAAGAAGGAATGACAATGGTGATTGAAGGTTCAC
TTTGATGAACACGAGATGTGGAAAATGATGGTGAAGCTAAGTCGGCGTTG
CTTGAATCGTGACCAGTAGAATATGATATTTGGTAATGTTGACTGCTAGA
GATTGCCAGAGTCGATGGAAAGATAGTAGTTGACATATTAGTGTTCCCGA
TTTGGTCAAGAAAGTCACATGTACTAGGAAATTTCTCACATGTGCAATAA
TAGAAGATTGAACCTAAGAATTGCATTGTGGATGTACAGATTTCGGCAAA
TGTGGTCTCATCTTTATCAAGCATTGTACATACATCAGTCATATTTCCAC
AATTACATTTACTTGCAACAATATCGAATCTTGACATCCTATAGTTATAT
AGATCACCATTAATTACTTCACAAAAGCTTTCCAAATATGTTGATCCTGG
ACCTTGGATGATTTGGTCCGAGCGGCTAACTGGAGCCAATGTATTTCGTA
TCCAAGCGTCTTGAGCAACTGTCGATGATGATGCAGGAGCAAGGAGGGGA
GACGACGTAGATTCACTTTGAATAGATGCACCAATCGATGCTTGAGATGG
TGTTGCCAGGATTAACGTCGAGACTTCAATAGGAGAACTGTCATCGCCAC
TACCAGAACCACTAGTGGAAGGAAAGAATTCATCCAAACTGTAATCTCCA
TAGTCATTAAAAATTCGACACGTATTCAATATGTTGGTACAATTGCAATG
TAGACCAGTGGATAAAGCATCGATTTCTTGACAGAATGTTTGAAATGACC
AAGAACGAAGATTATTTTCCATAGCACAGGTTAAAGGAAAGGTGTCGCAG
TTACAGTCGTTCAAAAACTCTGTTCTTATTGTCAAATTGACCATATAGGT
GGAGGTGGACAAGCAAATGTATCTGACAGGGTTAAACGTTGTAAATCTAC
ATTTAACATTTTCTTCTTGGTATATTATAAAAAATGCTAGAAACATTAAT
CTAGCCATTTTAAAGTCCATTTTTAATGTCATAATAAAACAAATTTCAGT
TGACTTTGCAGAATTAATTATCAGTCTTATTATTTTGACCAGTTACTGCT
TTAGCTCCAAAGAAAATCAACCCTTCTCAGGACTTTTTTG Run BLAST on NCBI protein sequence of TCONS_00000901-protein >TCONS_00000901-protein ID=TCONS_00000901-protein|Name=TCONS_00000901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=883bp
MTLKMDFKMARLMFLAFFIIYQEENVKCRFTTFNPVRYICLSTSTYMVNL
TIRTEFLNDCNCDTFPLTCAMENNLRSWSFQTFCQEIDALSTGLHCNCTN
ILNTCRIFNDYGDYSLDEFFPSTSGSGSGDDSSPIEVSTLILATPSQASI
GASIQSESTSSPLLAPASSSTVAQDAWIRNTLAPVSRSDQIIQGPGSTYL
ESFCEVINGDLYNYRMSRFDIVASKCNCGNMTDVCTMLDKDETTFAEICT
STMQFLGSIFYYCTCEKFPSTCDFLDQIGNTNMSTTIFPSTLAISSSQHY
QISYSTGHDSSNADLASPSFSTSRVHQSEPSITIVIPSSIIVDSPLTPSP
SQGNIIETKTVATIYFTTATIKQTSPIDQQINSPSQSNTIGATPVSSTMT
PSPSQENTSETEMTATILITTVTINQTSSIDQQIIASKQSDTIRVTPVSP
LIEPTSSITTTTPPFLSEYCIAFNMDLARQRFPMPRIDPSTCNCQVMNEV
CVGLQNSTINFPSLCETTKIKILKIRSPLMCECFNFPNTCLDLLSDQSTK
NIVPSTSMIDSQSPKSTFQIPVSSFQTTLDHPTISTIVLQPEHTTLIQNI
HASSVTQSLSTTSLPQPLNQLQELLMQFCNVFNTDISRTRINVDIIKESN
CNCQHLNSTCQSLQRNANFTMVCSETAKTYSNFPLTCLCTSFNNTCQFLD
ELNQTAAGLNKSLTAGTSTHAQPTLSTSSIPLSSSHKHQVPIRTVPKSTS
SQIAISTPMFILETMESSSSKTQSSVQPSSSQENIQTTQSSPEVIASESS
PNAYVPSTSITKGPELFLSIQPRQSIKSYHALMATASIANLEIANLESNV
SDNKQTSAGKPLAPGFIMLILPLIFTIIKLINI Run BLAST on NCBI transcript from alignment at sc0000005:30297..33436 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000901 ID=TCONS_00000901|Name=TCONS_00000901|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at sc0000005:30297..33436 (Clytia hemisphaerica)
CAAAAAAGTCCTGAGAAGGGTTGATTTTCTTTGGAGCTAAAGCAGTAACT
GGTCAAAATAATAAGACTGATAATTAATTCTGCAAAGTCAACTGAAATTT
GTTTTATTATGACATTAAAAATGGACTTTAAAATGGCTAGATTAATGTTT
CTAGCATTTTTTATAATATACCAAGAAGAAAATGTTAAATGTAGATTTAC
AACGTTTAACCCTGTCAGATACATTTGCTTGTCCACCTCCACCTATATGG
TCAATTTGACAATAAGAACAGAGTTTTTGAACGACTGTAACTGCGACACC
TTTCCTTTAACCTGTGCTATGGAAAATAATCTTCGTTCTTGGTCATTTCA
AACATTCTGTCAAGAAATCGATGCTTTATCCACTGGTCTACATTGCAATT
GTACCAACATATTGAATACGTGTCGAATTTTTAATGACTATGGAGATTAC
AGTTTGGATGAATTCTTTCCTTCCACTAGTGGTTCTGGTAGTGGCGATGA
CAGTTCTCCTATTGAAGTCTCGACGTTAATCCTGGCAACACCATCTCAAG
CATCGATTGGTGCATCTATTCAAAGTGAATCTACGTCGTCTCCCCTCCTT
GCTCCTGCATCATCATCGACAGTTGCTCAAGACGCTTGGATACGAAATAC
ATTGGCTCCAGTTAGCCGCTCGGACCAAATCATCCAAGGTCCAGGATCAA
CATATTTGGAAAGCTTTTGTGAAGTAATTAATGGTGATCTATATAACTAT
AGGATGTCAAGATTCGATATTGTTGCAAGTAAATGTAATTGTGGAAATAT
GACTGATGTATGTACAATGCTTGATAAAGATGAGACCACATTTGCCGAAA
TCTGTACATCCACAATGCAATTCTTAGGTTCAATCTTCTATTATTGCACA
TGTGAGAAATTTCCTAGTACATGTGACTTTCTTGACCAAATCGGGAACAC
TAATATGTCAACTACTATCTTTCCATCGACTCTGGCAATCTCTAGCAGTC
AACATTACCAAATATCATATTCTACTGGTCACGATTCAAGCAACGCCGAC
TTAGCTTCACCATCATTTTCCACATCTCGTGTTCATCAAAGTGAACCTTC
AATCACCATTGTCATTCCTTCTTCAATAATTGTAGATTCTCCACTAACGC
CTTCACCAAGCCAAGGTAACATCATTGAAACTAAAACAGTAGCCACAATC
TACTTTACAACAGCTACAATCAAACAAACATCACCGATTGACCAACAAAT
CAATTCTCCAAGTCAATCAAACACCATTGGAGCCACACCAGTATCTTCAA
CAATGACACCTTCACCAAGCCAAGAAAATACTAGTGAAACTGAAATGACT
GCAACAATCCTCATTACAACAGTTACTATAAACCAAACGTCGTCGATTGA
CCAACAAATAATTGCGTCAAAACAATCAGACACCATTAGAGTCACACCGG
TATCTCCATTAATAGAACCAACATCTTCCATAACCACCACAACACCACCT
TTCCTATCAGAATACTGCATTGCTTTCAACATGGATTTGGCTAGACAAAG
ATTTCCAATGCCTCGAATTGATCCATCAACATGCAATTGTCAAGTGATGA
ACGAAGTTTGTGTAGGACTACAAAATTCGACAATAAACTTTCCATCTTTA
TGTGAgacaacaaaaattaaaatcttgaaaattcgcTCCCCGCTCATGTG
cgaatgtttcaattttcccAATACTTGTTTAGATCTTTTATCAGACcaat
caacaaaaaatatcGTTCCATCAACCTCGATGATTGATTCCCAATcacca
aaatcaacttttcaaaTCCCAGTAAGCTCTTTTCAAACTACTCTAGACCA
CCCAACCATTTCCACGATTGTGCTTCAACCGGAACACACTACCCTTATAC
AGAATATCCATGCATCCTCGGTAACTCAATCACTTAGTACTACAAGTCTA
CCACAACCATTAAATCAATTGCAAGAACTTTTAATGCAATTTTGTAATGT
CTTCAATACAGACATTAGTAGAACAAGAATAAATGTTGATATTATTAAAG
AATCAAATTGCAATTGCCAACATTTAAACAGTACATGTCAATCACTTCAA
AGAAACGCTAATTTCACCATGGTCTGTTCAGAAACAGCAAAGACCTATTC
AAACTTCCCGTTGACTTGCCTGTGCACCAGTTTCAACAACACATGTCAAT
TTCTTGATGAACTCAATCAAACAGCAGCAGGTCTTAATAAGTCCTTAACT
GCTGGAACATCAACACATGCCCAACCCACATTGTCTACAAGCAGTATTCC
ACTATCTAGCTCGCATAAACATCAAGTCCCGATAAGAACAGTCCCGAAAT
CAACCAGCAGTCAAATTGCAATTTCTACACCTATGTTCATTTTGGAAACT
ATGGAGTCTTCGTCATCAAAAACACAATCCTCTGTTCAACCTTCAAGTTC
ACAAGAAAACATCCAGACCACTCAAAGTTCACCAGAAGTTATTGCCAGCG
AAAGTTCTCCAAATGCTTATGTACCGTCAACGTCAATTACAAAAGGTCCT
GAGCTATTCCTAAGCATTCAACCGAGGCAATCTATTAAGTCTTACCATGC
CCTTATGGCAACAGCATCGATTGCAAACCTGGAAATAGCGAATTTAGAAT
CAAACGTCTCTGACAACAAACAAACCAGCGCTGGTAAACCCCTCGCCCCA
GGATTTATTATGTTGATATTACCATTAATTTTCACCATAATAAAACTGAT
CAACATTTAAAATGTTGACATTCGATTGAGGGAAAAACATTTGCACAAGT
TTGAGTAAGATACCTTAAAATTTTACTTGTATTTATGATGATGGATTAAT
TAGAGTTACACGTaaatagagacttatacgcATACGTAATTAGCCGTTTT
TAAACCACACGCATTTAATTcctgtgataaacaaagagggatgaatctgt
aggggtgatacagtcactttcggtcgggacTGTGATAtgaaatttgttga
atttgtcgTTCTTaagaaatttgtcgttctttttagatggtctggaaacA
TTATAGATTAATAGTCTCGTTATAAANTTAGATGGTCTGGAAACATTATA
GATTAATAGTCTCGttataaacttttttatttattttttg Coding sequence (CDS) from alignment at sc0000005:30297..33436 >TCONS_00000901 ID=TCONS_00000901|Name=TCONS_00000901|organism=Clytia hemisphaerica|type=CDS|length=2652bp|location=Sequence derived from alignment at sc0000005:30297..33436 (Clytia hemisphaerica)
ATGACATTAAAAATGGACTTTAAAATGGCTAGATTAATGTTTCTAGCATT
TTTTATAATATACCAAGAAGAAAATGTTAAATGTAGATTTACAACGTTTA
ACCCTGTCAGATACATTTGCTTGTCCACCTCCACCTATATGGTCAATTTG
ACAATAAGAACAGAGTTTTTGAACGACTGTAACTGCGACACCTTTCCTTT
AACCTGTGCTATGGAAAATAATCTTCGTTCTTGGTCATTTCAAACATTCT
GTCAAGAAATCGATGCTTTATCCACTGGTCTACATTGCAATTGTACCAAC
ATATTGAATACGTGTCGAATTTTTAATGACTATGGAGATTACAGTTTGGA
TGAATTCTTTCCTTCCACTAGTGGTTCTGGTAGTGGCGATGACAGTTCTC
CTATTGAAGTCTCGACGTTAATCCTGGCAACACCATCTCAAGCATCGATT
GGTGCATCTATTCAAAGTGAATCTACGTCGTCTCCCCTCCTTGCTCCTGC
ATCATCATCGACAGTTGCTCAAGACGCTTGGATACGAAATACATTGGCTC
CAGTTAGCCGCTCGGACCAAATCATCCAAGGTCCAGGATCAACATATTTG
GAAAGCTTTTGTGAAGTAATTAATGGTGATCTATATAACTATAGGATGTC
AAGATTCGATATTGTTGCAAGTAAATGTAATTGTGGAAATATGACTGATG
TATGTACAATGCTTGATAAAGATGAGACCACATTTGCCGAAATCTGTACA
TCCACAATGCAATTCTTAGGTTCAATCTTCTATTATTGCACATGTGAGAA
ATTTCCTAGTACATGTGACTTTCTTGACCAAATCGGGAACACTAATATGT
CAACTACTATCTTTCCATCGACTCTGGCAATCTCTAGCAGTCAACATTAC
CAAATATCATATTCTACTGGTCACGATTCAAGCAACGCCGACTTAGCTTC
ACCATCATTTTCCACATCTCGTGTTCATCAAAGTGAACCTTCAATCACCA
TTGTCATTCCTTCTTCAATAATTGTAGATTCTCCACTAACGCCTTCACCA
AGCCAAGGTAACATCATTGAAACTAAAACAGTAGCCACAATCTACTTTAC
AACAGCTACAATCAAACAAACATCACCGATTGACCAACAAATCAATTCTC
CAAGTCAATCAAACACCATTGGAGCCACACCAGTATCTTCAACAATGACA
CCTTCACCAAGCCAAGAAAATACTAGTGAAACTGAAATGACTGCAACAAT
CCTCATTACAACAGTTACTATAAACCAAACGTCGTCGATTGACCAACAAA
TAATTGCGTCAAAACAATCAGACACCATTAGAGTCACACCGGTATCTCCA
TTAATAGAACCAACATCTTCCATAACCACCACAACACCACCTTTCCTATC
AGAATACTGCATTGCTTTCAACATGGATTTGGCTAGACAAAGATTTCCAA
TGCCTCGAATTGATCCATCAACATGCAATTGTCAAGTGATGAACGAAGTT
TGTGTAGGACTACAAAATTCGACAATAAACTTTCCATCTTTATGTGAgac
aacaaaaattaaaatcttgaaaattcgcTCCCCGCTCATGTGcgaatgtt
tcaattttcccAATACTTGTTTAGATCTTTTATCAGACcaatcaacaaaa
aatatcGTTCCATCAACCTCGATGATTGATTCCCAATcaccaaaatcaac
ttttcaaaTCCCAGTAAGCTCTTTTCAAACTACTCTAGACCACCCAACCA
TTTCCACGATTGTGCTTCAACCGGAACACACTACCCTTATACAGAATATC
CATGCATCCTCGGTAACTCAATCACTTAGTACTACAAGTCTACCACAACC
ATTAAATCAATTGCAAGAACTTTTAATGCAATTTTGTAATGTCTTCAATA
CAGACATTAGTAGAACAAGAATAAATGTTGATATTATTAAAGAATCAAAT
TGCAATTGCCAACATTTAAACAGTACATGTCAATCACTTCAAAGAAACGC
TAATTTCACCATGGTCTGTTCAGAAACAGCAAAGACCTATTCAAACTTCC
CGTTGACTTGCCTGTGCACCAGTTTCAACAACACATGTCAATTTCTTGAT
GAACTCAATCAAACAGCAGCAGGTCTTAATAAGTCCTTAACTGCTGGAAC
ATCAACACATGCCCAACCCACATTGTCTACAAGCAGTATTCCACTATCTA
GCTCGCATAAACATCAAGTCCCGATAAGAACAGTCCCGAAATCAACCAGC
AGTCAAATTGCAATTTCTACACCTATGTTCATTTTGGAAACTATGGAGTC
TTCGTCATCAAAAACACAATCCTCTGTTCAACCTTCAAGTTCACAAGAAA
ACATCCAGACCACTCAAAGTTCACCAGAAGTTATTGCCAGCGAAAGTTCT
CCAAATGCTTATGTACCGTCAACGTCAATTACAAAAGGTCCTGAGCTATT
CCTAAGCATTCAACCGAGGCAATCTATTAAGTCTTACCATGCCCTTATGG
CAACAGCATCGATTGCAAACCTGGAAATAGCGAATTTAGAATCAAACGTC
TCTGACAACAAACAAACCAGCGCTGGTAAACCCCTCGCCCCAGGATTTAT
TATGTTGATATTACCATTAATTTTCACCATAATAAAACTGATCAACATTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000901-exon-sc0000005-1491911889:30297..33436 | TCONS_00000901-exon-sc0000005-1491911889:30297..33436 | Clytia hemisphaerica | exon |
| TCONS_00000901-exon-sc0000005-1510915933:30297..33436 | TCONS_00000901-exon-sc0000005-1510915933:30297..33436 | Clytia hemisphaerica | exon |
| TCONS_00000901-exon-sc0000005-1575043694:30297..33436 | TCONS_00000901-exon-sc0000005-1575043694:30297..33436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:30297..33436 . |
Blast
The following BLAST results are available for this feature:
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