TCONS_00071363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071363
Unique NameTCONS_00071363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071363 ID=TCONS_00071363|Name=TCONS_00071363|organism=Clytia hemisphaerica|type=transcript|length=957bp
ATCTTTTCCTCCCGATTTAATATCTTCTTAAAATTATTCCTGAACCTACA
TCCATTGCCATAATTAGAAATTGACTGGTTCAATCGTGATTGCCCCGGGT
GCTATATTTTCGTAACCTGCATAGATCGTAAAGTAAAGTAAATCTTTAAT
ATACGGTATCTGCAAGTTTGTTAACAATAACATTGCAAGTGTCCGTTTGG
TCTGACGAATTAAAATTAATTCCAATTCTGTTCTCGATTTCAGTTTTTAT
TTGCTCAACTCCGTTTACTCTATTGCTTGGCATATTATTAAAATCATACC
TCATATtatcttcaattttaatttctactgtaatgtcatcaagttcaatt
tttatgttttccattgtttttgctTAAATAATAACGTTACTTGTTATATA
TTGTTTCTTCAAAAGAAATCACAGGTCATGCATTAATTTCGGAAAGTAAT
TCCTGACAATACACATCCATGTAACTATCAAATGTCCACATTGATGCTGC
TTTCTTTGTCTTTAACTTTACGAAATATTCCCTTTGTATCTCATGACAGA
GATATAATAATTTTAGTGCATCAGGGGTTATAATAGAATTCGTCATTTGT
GAGGGAATAATTGAGCGTGGAGGACCAGTTGGGTCCTCCATAACGTCGTA
AATAAACATATCTTCCTCGGTAAAGGGAATCAAGGGTTCCGCCCTTAAGG
CCTCTTCTTGTGGCGATAATTTCATTTCGCCAAATAATCGCTCCATTCTG
TTTTGCTGGATCTGGATCATCATCTTTACAAAGGATTAGAAACAACGATA
AGACAATTTTCACACCGTTAACTTTCTTGTCatctaaaatattttccaat
cAAGACACCTGATGTATTCTATATGTCTCGTGTTGCAAAGGACTTATTTT
CTTTTGCCCACTTTTACAAAACACACGTTGCAAAACCATTCTTTTACAAC
AGGTCGG
Run BLAST on NCBI

protein sequence of TCONS_00071363-protein

>TCONS_00071363-protein ID=TCONS_00071363-protein|Name=TCONS_00071363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MMIQIQQNRMERLFGEMKLSPQEEALRAEPLIPFTEEDMFIYDVMEDPTG
PPRSIIPSQMTNSIITPDALKLLYLCHEIQREYFVKLKTKKAASMWTFDS
YMDVYCQELLSEINA
Run BLAST on NCBI

transcript from alignment at scaffold_60:715667..716623-

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071363 ID=TCONS_00071363|Name=TCONS_00071363|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at scaffold_60:715667..716623- (Clytia hemisphaerica)
ATCTTTTCCTCCCGATTTAATATCTTCTTAAAATTATTCCTGAACCTACA
TCCATTGCCATAATTAGAAATTGACTGGTTCAATCGTGATTGCCCCGGGT
GCTATATTTTCGTAACCTGCATAGATCGTAAAGTAAAGTAAATCTTTAAT
ATACGGTATCTGCAAGTTTGTTAACAATAACATTGCAAGTGTCCGTTTGG
TCTGACGAATTAAAATTAATTCCAATTCTGTTCTCGATTTCAGTTTTTAT
TTGCTCAACTCCGTTTACTCTATTGCTTGGCATATTATTAAAATCATACC
TCATATTATCTTCAATTTTAATTTCTACTGTAATGTCATCAAGTTCAATT
TTTATGTTTTCCATTGTTTTTGCTTAAATAATAACGTTACTTGTTATATA
TTGTTTCTTCAAAAGAAATCACAGGTCATGCATTAATTTCGGAAAGTAAT
TCCTGACAATACACATCCATGTAACTATCAAATGTCCACATTGATGCTGC
TTTCTTTGTCTTTAACTTTACGAAATATTCCCTTTGTATCTCATGACAGA
GATATAATAATTTTAGTGCATCAGGGGTTATAATAGAATTCGTCATTTGT
GAGGGAATAATTGAGCGTGGAGGACCAGTTGGGTCCTCCATAACGTCGTA
AATAAACATATCTTCCTCGGTAAAGGGAATCAAGGGTTCCGCCCTTAAGG
CCTCTTCTTGTGGCGATAATTTCATTTCGCCAAATAATCGCTCCATTCTG
TTTTGCTGGATCTGGATCATCATCTTTACAAAGGATTAGAAACAACGATA
AGACAATTTTCACACCGTTAACTTTCTTGTCATCTAAAATATTTTCCAAT
CAAGACACCTGATGTATTCTATATGTCTCGTGTTGCAAAGGACTTATTTT
CTTTTGCCCACTTTTACAAAACACACGTTGCAAAACCATTCTTTTACAAC
AGGTCGG

Coding sequence (CDS) from alignment at scaffold_60:715667..716623-

>TCONS_00071363 ID=TCONS_00071363|Name=TCONS_00071363|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_60:715667..716623- (Clytia hemisphaerica)
TCATGCATTAATTTCGGAAAGTAATTCCTGACAATACACATCCATGTAAC
TATCAAATGTCCACATTGATGCTGCTTTCTTTGTCTTTAACTTTACGAAA
TATTCCCTTTGTATCTCATGACAGAGATATAATAATTTTAGTGCATCAGG
GGTTATAATAGAATTCGTCATTTGTGAGGGAATAATTGAGCGTGGAGGAC
CAGTTGGGTCCTCCATAACGTCGTAAATAAACATATCTTCCTCGGTAAAG
GGAATCAAGGGTTCCGCCCTTAAGGCCTCTTCTTGTGGCGATAATTTCAT
TTCGCCAAATAATCGCTCCATTCTGTTTTGCTGGATCTGGATCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044347XLOC_044347Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071363-proteinTCONS_00071363-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071363-exon-scaffold_60-1575043694:715667..716623TCONS_00071363-exon-scaffold_60-1575043694:715667..716623Clytia hemisphaericaexon
TCONS_00071363-exon-scaffold_60-1510915933:715667..716623TCONS_00071363-exon-scaffold_60-1510915933:715667..716623Clytia hemisphaericaexon
TCONS_00071363-exon-scaffold_60-1491911889:715667..716623TCONS_00071363-exon-scaffold_60-1491911889:715667..716623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:715667..716623 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0474301	0	0	0.15762	0	0	0	0.171263	0.0989948	0.0495074	0.0480531	0.157941	0	0	0	0	0	0.0364946	0.0504193	0	0.0458581	0	0	0	0.378386	0.272689	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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