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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071361 ID=TCONS_00071361|Name=TCONS_00071361|organism=Clytia hemisphaerica|type=transcript|length=628bp
GTAATTTGTAATGCTGGGCAAAGGTGGAGCCTGATCTCCATCCAGCAGCT
TTAGCTATATCTTTTATTGACAAACCCATGTTGTTGGTTTTGCTTGTGGA
GGCATGGCGCGTTGAGTGTGCTGTGAAAACAGTAATGTCCACACCGGCCA
TGCctaagaataattttatataTCGTGCAATAGTAGCTACTTTAACTGGT
TTGTGAGGATATGTAAGAGAGTATCAATTCCTGGGGATTACCCTCTAAAT
TTTCCCTGATGTTATCTGTTCTTCTACGATATTCTTCAAAACAATTAATG
ATACATATGTTCTTGTCCATATATTTTGTAAATTCCAGAGGTTTTTGGTG
TTTTCTAGGTTTGGACGTTTTCATTAAGGATCTGATATAAAACACCAGTT
CTTCGTCTGATTTACCACATGCGTCAAGCCGTAATGCACCAATAGTTTGG
CCTCTCTGACCGCTTAGAAAGCATAACAATGTGGCAAGTTTCTTTGTTAA
CAGTTCCAGTTCAAGCTGTTTATTCTCTGGTAAGCTAGCAGTATAGTCGA
GGACTATATCTGGATCATAGATCATTGTGTATCTAGGTGTTGAGGGTCTG
GTTTTAAACATGCCTCTCAACAACCTAG Run BLAST on NCBI transcript from alignment at scaffold_60:636570..639923- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071361 ID=TCONS_00071361|Name=TCONS_00071361|organism=Clytia hemisphaerica|type=transcript|length=3354bp|location=Sequence derived from alignment at scaffold_60:636570..639923- (Clytia hemisphaerica)
GTAATTTGTAATGCTGGGCAAAGGTGGAGCCTGATCTCCATCCAGCAGCT
TTAGCTATATCTTTTATTGACAAACCCATGTTGTTGGTTTTGCTTGTGGA
GGCATGGCGCGTTGAGTGTGCTGTGAAAACAGTAATGTCCACACCGGCCA
TGCCTAAGAATAATTTTATATATCGTGCAATAGTAGCTACTTTAACTGGT
TTGTGAGGATATGTAAGAGAGTATCAATTCCTGGGGATTACCCTCTAAAT
TTTCCCTGATGTTATCTGTTCTTCTACGATATTCTTCAAAACAATTAATG
ATACATTATGTTCTTGTCCATATATTTTGTAAATTCCAGAGGTTTTTGGT
GTTTTCCAGGTTTGGACGTTTTCATTAAGGATCTGATATAAAACACCAGT
TCTTCGTCTGATTTACCACATGCGTCAAGCCGTAATGCACCAATAGTTTG
GCCTCTTTGACCGCTTAGAAAGCATAACAATGTGGCAAGTTTCTTTGTTA
ACAGTTCCAGTTCAAGCTGTTTATTCCCTGGTAAGCTAGCAGTATAGTCG
ATGACTATATCTGGATCATAGATCATTGTGTATCTAGGTGTTGAGGGTCT
GGTTTTAAACATGCCTCTCAACAACCTAGATACCTGTTCATTTGCCCCAA
ATGNGTTTTTAGTTTTGAAAATTCGTGGGAATTTCCCTTTTTTCTAAAAT
ATTACGACCATGATTGTACACGTTTTGCATGTGATCTTATAATTACTGTA
GGTGAAACAACTCCTTAAAAGGGTTGCATTGTATTGAGCAGCAGGTTTAA
CAGTTGTCTCGTCAGTCATTAAATTTTCAGCAAAATTCAAATTTCAATCT
ATGACTGAAAAACACTTCGAAAAATACTTCACTTATACACGGGTTGTTTT
AGCCTGACTCCTACAGCTTCACTGCATTAAGATTAAGAGATTCGCTTCCG
TGAAATTCCTCCTTCAAAGACTAGTTTAAGAGCAAAGTTTATGTAGTAAA
TGTTGAGGTGAAAAGGGGGTATACAGGGGTTTGGTGGGCACTTGAATACT
GGATCAGAGGTAAATTATTATCTTAATTGAACTGCATTTTATTTGTTTAA
TTTTATCAATAATAATTTAGCCTCTGATCCAAAGTATTCAAATGAGACTT
CAAAGCAAACTTTGGTCTTAAATGCAAAGTATATTTTCATAAAAGAAATA
TATAAAATATATAGTAACACAACTACTATGATCAATATCTTGTACAAGAA
ATAATTTTCTATCAACCAGTTTCAATCATGTTACATATCATGTGGGTATC
TACCTTTGTGATAATAATTTCTTTCCAAAGTTCTCGTTTCTTATAGGTAA
TTTGTAATGCTGGGCAAAGGTGGAGCCTGATCTCCATCCAGCAGCTTTAG
CTTTATCTTTTATTGAAAAACCCATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNACCGGCCATGCCTAAGAATGATTTTATATATCGT
GCAATAGTAGCTACTTTAACTGCTTTGTGAGGATATGTGTAAGAGAGTAT
CAATTCCTGGGGATTACCCTCTAAATTTTCCCTGATGTTATCTGTTCTTC
TAAGATATTCTTCAAAACAATTAATGATACATATGTTCTTGTCCATATAT
TTTGTAAATTCCAGAGGTTTTTGGTGTTTTCTAGGTTTGGACGTTTTCAT
TAAGGATCTGATATAAAACACCAGTTCTTCGTCTGATTTACCACATGCGT
CAAGCCGTAATGCACCAATAGTTTGGCCTCTCTGACCGCTTAGAAAGCAT
AACAATGTGGCAAGTTTCTTTGTTAACAGTTCCAGTTCAAGCTGTTTATT
CTCTGGTAAGCTAGCAGTATAGTCGAGGACTATATCTGGATCATAGATCA
TTGTGTATCTAGGTGTTGAGGGTCTGGTTTTAAACATGCCTCTCAACAAC
CTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071361-exon-scaffold_60-1575043694:639620..639923 | TCONS_00071361-exon-scaffold_60-1575043694:639620..639923 | Clytia hemisphaerica | exon |
| TCONS_00071361-exon-scaffold_60-1575043694:636570..636893 | TCONS_00071361-exon-scaffold_60-1575043694:636570..636893 | Clytia hemisphaerica | exon |
| TCONS_00071361-exon-scaffold_60-1510915933:639620..639923 | TCONS_00071361-exon-scaffold_60-1510915933:639620..639923 | Clytia hemisphaerica | exon |
| TCONS_00071361-exon-scaffold_60-1510915933:636570..636893 | TCONS_00071361-exon-scaffold_60-1510915933:636570..636893 | Clytia hemisphaerica | exon |
| TCONS_00071361-exon-scaffold_60-1491911889:639620..639923 | TCONS_00071361-exon-scaffold_60-1491911889:639620..639923 | Clytia hemisphaerica | exon |
| TCONS_00071361-exon-scaffold_60-1491911889:636570..636893 | TCONS_00071361-exon-scaffold_60-1491911889:636570..636893 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:636570..639923 - |
Blast
The following BLAST results are available for this feature:
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