TCONS_00071178 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071178
Unique Name	TCONS_00071178
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2613

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_6:240540..250932-

transcript sequence

>TCONS_00071178 ID=TCONS_00071178|Name=TCONS_00071178|organism=Clytia hemisphaerica|type=transcript|length=2613bp
AGAAAACTGAAGAAAAGACTGTGACAGCACACTCACACTCTAAattttga
caaacttttttctgaaaaacaaACTCAAGACTTGCAATTTCCATGAACGT
CCTCTGGATAAACTGATAAAGTTATTAAATTTATTATAAAGGTTTTAAAA
GAGAAGAGCAGAAGAAGGagttatatttttaaagaactcttttATGTCTT
TTACAAGATCAAAAAGTTCAATAGCCATGTCCATGAAACGATCTGTCATT
TATTTGTTCCAAAACGATTTACGACTTCATGACAATGAATGCTTAAAGAT
TGCTCAAAGTAAAGGGAATTTCTTGATTCCCTTATATTGTTTCCAGCCCA
ACCATTTCAAGGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTACACAC
AGAACAAAATTTCTCATTGAAAGCATCACTGATCTACGTGCTAATCTACA
AAAACTTGGTTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCAGCCA
TCAAAGACTTGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCC
ATCATTTATCAAAAAGAAGTGACTTCAGAAGAGattgatttagaaaaaca
aatcaaatcttTCTGCAAAGAACAAAGCATTGAAGACTACCCTGTTTGGG
GTTTGTCATTGTTTCACAAAGATGACATTCCATACAATAAGAAGACCATC
CCAGATACATATTCCAAGTTTCGTCAAGGAGTAGAATCTAAAAGCGAAAT
TCGTGATTTAATTCCTACACCACTAACCCTTAATAAACTGCCACCTATCA
AAGGTGCCAGTCTTGGTGATATCCCTACAATGGAGAAGTTGATCGGTGTT
CAAAGCTATATGCAAGATAACAGAACAGCTGTTCCACTAGAAGGTGGTGA
AAGTGCTGGCTTGAAACATCTCCAAAAATATCTTTGGGACACTGATGCCA
TTTCAACTTACAAAGAAACCAGGAATGGTCTATTAGGAGAAGAATACTCG
ACCAAGTTTAGTATCTGGCTTGCTAATGGTTCTTTATCTCCAAGACAGAT
CTACCATGAAGTCAAGAGATATGAAAATCAACGTGTATCCAACCAATCCA
CTTACTGGAGTATCTTTGAACTGATCTGGAGAGATTACTTTAAATTTGTA
TGTTGGAAATATGGGAGAAAAGTGTTCTATTTATCTGGCATCATGGGCAA
ACATTTACCTTGGAAACAAGACAAAATTGCTTTTCAGAAATGGTGTCAAG
GTGAGACAGGTGTTCCTTTTGTTGACGCAAATATGAGAGAGTTACTTCAT
ACAGGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGT
CAAGGACTTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCAC
AACTTCTTGATCATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCA
GCTGGCATTGGTAATGATCCAAGACAAGACCGTAAATTCAATATGATCAA
ACAAGCTCTTGATTATGATGCTGAAGGAAAATTTGTGAAAACTTGGGTTC
CAGAGCTTACCAATCTTCCTGCTAACAAGGTCCATGTACCTTGGACTATT
CCTGACCGGGAGCTACAAAGATTGGAGTTCTCATTAGGGCAGGACTACCC
AAAGCCTATGGTAATGGCACCTGAGTGGGGCCGACATACACATAAAACGA
ACGGTAAAGCATTTCAAAAGAATGCAGAAAAGCCTCAAAGAGGgattgat
ttttattttaaatcacCAGATGCTGGCCCAAGTGGTCAGGGTTCTGCTGG
AGGAAAGAAAAACCAAAGGCGTTAAAATAATCAAATCTATGACGACGTAC
CGTtgaaatttttaagattggaAATCAAAATCTTTAGTGTGTTCTTGGTA
TTTTGTGATATCTGACAGGTCAGATTTACCCTTACTACTATTGCTCAGTG
CTGCGTTGTATAGTAaagtgaaaatataaaatacagTATGCAAGCTAACT
TGTTTTGAACGGTTGATACCACacatttataaagcccgaagggctagatg
tcgtgctttaagctcttccaagcaaaaaaaagtgaatatcgcaaaaagtA
TTGCTGCTGTTGTTCtcgaaaacctgcgaagctttTTATTgttcaagcgc
tgaaattctattatatcacgtgacctaggtaggatttcccaTCTAaactc
ggcacacttttcagccgaagcacgacatctagccattcgggctttTTAAA
TCTATGGTTGATACTACTATGaatattatttgaatgcatacGAGGGTATA
CGAAAATGGAATTTGTATTGTGTATTACATATAATGATTCAAGGATATGG
GAGGATAGTATTTgtatcaaaactaaaaaaaaacaattttagagagtatt
tttagatacttttatttattttgatataacGTTTTATATAGATTGTGTTT
TCATataatgaaaatttattttagccAATGTCTTTGTTACTATAACTTGT
CTTGACTACCATTATATACTTCAATTACTCATGTACTTTCCTATCCTACC
AGTTTTGAACTAGAATCAGAAGCAATAGAAAATTCAGTTGATCTGCCTGA
TACTATTCTCTCA

Run BLAST on NCBI

transcript from alignment at scaffold_6:240540..250932-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071178 ID=TCONS_00071178|Name=TCONS_00071178|organism=Clytia hemisphaerica|type=transcript|length=10393bp|location=Sequence derived from alignment at scaffold_6:240540..250932- (Clytia hemisphaerica)
AGAAAACTGAAGAAAAGACTGTGACAGCACACTCACACTCTAAATTTTGA
CAAACTTTTTTCTGAAAAACAAACTCAAGACTTGCAATTTCCATGAACGT
CCTCTGGATAAACTGATAAAGTTATTAAATTTATTATAAAGGTTTTAAAA
GAGAAGAGCAGAAGAAGGAGTTATATTTTTAAAGAACTCTTTTATGTCTT
TTACAAGATCAAAAAGTTCAAGTAAGTAGGGAGATGTTTTGTTTTTTATT
TTATTTAGCTAAGTATGGGAATTTTCAAAATGCTTGCAACGTTACAAATC
ATTTTCAGAAGCTCATTTTGGTTTGGGCTCAAACGAAGCGTATACCGTTG
TGAGAGTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCGCCCTC
AGATGAAAGATCTGGCTGGTCATTAAAATACAACTACGCAGCTCCGCTCG
CAGCTCTACTCTACCATTTTTGTTTTGATTTAACTTTGTACAGTCAGGCA
CATCCTGGCAAATGAACAGGGTATTTTTCATTTGCGATTGGTGGCAAATG
CAAGGGGTCGAAAACAAAAGTGATGTAATAGCACTGAATACCCCACGCAA
TTGAACTGGGTTGGAAATATTTTGCTTCATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCTTTCATTTGAGGGCTATGCATGTTAGCCATTAGCCTGCCTCC
ACTGATGCAAGTTACCCAATCTCACGGTATATAACTAAGAGTAAGATTCA
GTCTAGGCCAGATGTCTTTTTTATATTTTGATATTTTGCGTAATTCATAA
AAATCCTCAATTTTGTGCTACGTGGGATGATTGGTCTGTTAAATCTCTTT
GACAACAAATTTATCAATCAGTAGCTTCCACAGAGTGCAGATGTCTTGAA
TTTGGGACTTTGGATGTCAATATACCAGAATATACCGTGAAGTCGGGTAA
CTTGCATCAGTGGAGGGAAACTTGCATAGCCATCAAATGACTGACCAATC
AAAAGCAGCAAAATTTCAAAACAAATGAACTGCGCAGCTTCACTCGCAGC
TCTACTCTACCATGCCATTTTTGTTTCGATTTAATTTTGTATTTTAATGA
CCAGCCCGGGTCATTCATTTGAGGGGTATGCATGTTATGTTAGCCTCCAC
TGATGCAAGTTACCCGATCTCACGGTATATCTTGGGATAGAATTACCGTT
GACAACTTTGACTTGAATTTTCCAAATGATTTTCATGATAGCTATGCCCT
GACAAAGTTTCATTTTTTGTGCCGAAATCCCTTTAAATCACAATTTTTTC
TGGTCCTTATTAAAGACAATGTCTGGGTAAAGGGAGTGACAGATAAGGCT
GCGGCGTCCCATGCAGAGTCAGATAAATAAAAGCCATTTATTTGTGCAAT
GATATCCTCCAAACAAAATGTTTGAAAATGATTGAAAGTTGTTTTGAGCT
GCTTCACATTCTATTGCTTTAAAACAATAAAATTAATTGTAAAGTTGATT
TTGAATAAATTTGAATTGAATTCATAGGTTGCAGAGGGCTATGAACCCCT
AGGTTTATTTCACCCCATATATACACCCCCTGCGCTCTATGCACCACTAA
AAGTGATTACAGAGTACAAGATTTATAGTCACAAGTCAAAAATTAACAAT
ATAACAATATAACTAGTGTTGTTTGGTGGTAAATATTTTTACCATTTTGT
ATGATTGAAATGATCATAATTTCCAAATCCCCTTATCTTATTTGACCCCT
CTAACATTCCCATACCTGCTACGAAAGACTGCTGTACGCAATGTTTTTTT
ATATACAAAGACAAAGCAAATATACATATGCTGCTCTGCCACCCAAATTT
CCTGAGTAAATATAGTTTGACAGAAATTCTTGATTTCTTCACATATATTG
GTCTAATGTTGACATCCCTTATCAAATTCTGACACATTTCTTTATAGTTA
TGGGAATAAAAGGAAGGTCAGAATTGCTGAGATTTTTTATCCAAAATGCT
TTGGGGGTAGTCTGGAGACAAAAAGAAAGATATGTTTGTAAATTTAACGA
GTAATTAGCTTGTATAACTTGATCATGAGTTAGTATCAATGCGTGACAGA
GTAAATAATCTCGAACCAACTTATACTTATGACTCTTCATTCATCAAGTA
AGAGTGTCAAATGATATTGGAAAATACAAAAAAATTCACACAGTCATAGC
CATCTCATTTTGACCACAAGGACTTATGGATCACAAAAATTGACAGTTTC
AAAATTTTTTTGAAACAATTTTTTCTAACACAAACCACAATCTTTTTTAA
CTGAGATGACAAGAGAATTACAAATTACACCCCTGTCTCACAGCCCCGGT
GGAACTTCTTCTCACAGTACAGTAGTGGGAATAAAAATTTATATCGAAAT
CCCAGGGGTAAAGAAATTCTAATTGTTCCCAGGTCAAAAAAATCCAGTAG
GGATGGTTTTGGAGTACAATTTTTTTCAATTGAGTTTCAATTGGGGATGA
AAATTAAATCAATTTTCCAGTAGGGCTGAAATTGTAGTAGGGTATTTTCC
CCAACCGGGACANGAAAATTAAATCAATTTTCCAGTAGGGCTGAAATTGT
AGTAGGGTATTTTTCCCAACCGGGACGAAATTTTAGCCAAATTTTTCAGA
GGAAAGGAAGTCCTACTTGGTTTGTGAACAGAGGGTGTCTTATTGGCATG
TCATACTTTTGAGTTGTGTTTCACACTGTATTTTTTATTTGTAGTAGCCA
TGTCCATGAAACGATCTGTCATTTATTTGTTCCAAAACGATTTACGACTT
CATGACAATGAATGCTTAAAGATTGCTCAAAGTAAAGGGAATTTCTTGAT
TCCCTTATATTGTTTCCAGCCCAACCATTTCAAGGTAAACTTTTCTTAAT
ACTTTGTACTATGCAAAGATCTAGCTGTTACATTCTTTTATTTAAAAATG
AAAAAAAAAATCTGCACTGTTTAAAGGAAAATNAGTCAAGTCTAAAAAAG
TAAGAATATGTTAAGAATATTTTGGCACTTTCTTAAAAATACTTGACCCT
CATCCAAAGTACACTATTCTTATAAAAAAAAAGAAAATTGTAAAAATTTT
TAAAACCCAGAAATTATCCCAAACTCACTTTTCTCTAACTCTCTTTTTTA
TAGGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTACACACAGAACAAA
ATTTCTCATTGAAAGCATCACTGATCTACGTGCTAATCTACAAAAACTTG
GTTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCAACCATCAAAGAC
TTGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCCATCATTTA
TCAAAAAGAAGTGACTTCAGAAGAGATTGATTTGNTACTTCATACAGGCT
GGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAAGGAC
TTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCGCAACTTCT
TGATCATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCTGGCN
GACTACCCTGTTTGGGGTTTGTCATTGTTTCACAAGTAAGTTTCAGTCTC
CTCTCTGTGAATTCGGTATGATGTCAAATTTAATAGAGTTTCCTCATTTT
TCTTAGTATTTTTTCTCTGACATATTTTTTTCTGTTGATAAAATTACTTA
GTTTTATCAAATATTCGTTTCGGTTTCGAGCATAAATTAAGGAAGATAGG
CTCCTACTCCTAAGGCCTAAAAGCCTGGAGCTGTCTATTGTGTAGACTAG
TTTGAATCATGCTCTCTCTATGTTAGCATAGTTATTTGATTTTATTGTTC
TTATACTTTTAGAGATGACATTCCATACAATAAGAAGACCATCCCAGATA
CATATTCCAAGTTTCGTCAAGGAGTAGAATCTAAAAGCGAAATTCGTGAT
TTAATTCCTACACCACTAACCCTTAATAAACTGCCACCTATCAAAGGTGC
CAGTCTTGGTGATATCCCTACAATGGAGAAGTTGATCGGTGTTCAAAGCT
ATATGCAAGATAACAGAACAGCTGTTCCACTAGAAGGTGGTGAAAGTGCT
GGCTTGAAACATCTCCAAAAATATCTTTGGGACACTGATGCCATTTCAAC
TTACAAAGAAACCAGGAATGGTCTATTAGGAGAAGAATACTCGACCAAGT
TTAGTATCTGGCTTGCTAATGGTTCTTTATCTCCAAGACAGATCTACCAT
GAAGTCAAGAGATATGAAAATCAACGTGTATCCAACCAATCCACTTACTG
GAGTATCTTTGAACTGATCTGGAGAGATTACTTTAAATTTGTATGTTGGA
AATATGGGAGAAAAGTGTTCTATTTATCTGGCATCATGGGCAAACATTTA
CCTTGGAAACAAGACAAAATTGCTTTTCAGAAATGGTGCCAAGGTGAGAC
AGGTGTTCCTTTTGTTGACGCAAATATGAGAGAGTTACTTCATACAGGCT
GGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAAGGAC
TTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCACAACTTCT
TGATCATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCTGGTA
TTGGTAATGATCCAAGACAAGACCGTAAATTCAATATGATCAAACAAGCT
CTTGATTATGATGCTGAAGGAAAATTTGTGAAAACTTGGGTTCCAGAGCT
TACCAATCTTCCTGCTAACAAGGTCCATGTACCTTGGACTATTCCTGACC
GGGAGCTACAAAGATTGGAGTTCTCATTAGGGCAGGACTACCCAAAGCCT
ATGGTAATGGCACCTGAGTGGGGCCGACATACACATAAAACGAACGGTAA
AGCATTTCAAAAGAATGCAGAAAAGCCTCAAAGAGGGATTGATTTTTATT
TTAAATCACCAGATGCTGGCCCAAGTGGTCAGGGTTCTGCTGGAGGAAAG
AAAAACAAAAGGCGTTAAAATAATCAAATCTATGACGACGTACCGTTGAA
ATTTTTAAGATTGGAAATCAAAATCTTTAGTGTGTTCTTAGTATGTTGTG
ATATCTGACAGGTCAGATTTACCCTTACTACTACTCAGTGCTGTGTTGTA
TAGTAAAGTGAAAACATAAAATACAGTATGCAAGCTAACTTGTTTTGATT
TTGAACGGTTGATACCACACATTTATAAAGCCCGAAGGGCTAGATGTCGT
GCTTTAAGCTCTTCTAAGCAAAAAAAAGTGAATATCGCAAAAAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGA
ATATGTTAAGAATATTTTGGCACTTTCTTAAAAATACTTGACCCTCATCC
AAAGTACACTATTCTTATAAAAAAAAAGAAAATTGTAAAAATTTTTAAAA
CCCAGAAATTATCCCAAACTCCCTTTTCTCTAACTCTCTTTTTTATAGGG
AACGTATAGCTTTAACTTGCCAAGAAGTGGTACACACAGAACAAAATTTC
TCATTGAAAGCATCACTGATCTACGTGCTAATCTACAAAAACTTGGTTCA
AACTTAGTTGTTCGAAATGAATCTCCACTGTCAGCCATCAAAGACTTGGT
AAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCCATCATTTATCAAA
AAGAAGTGACTTCAGAAGAGATTGATTTAGAAAAACAAATCAAATCTTTC
TGCAAAGAACAAAGCATTGAAGACTACCCTGTTTGGGGTTTGTCATTGTT
TCACAAGTAAGTTTCAGTCTCCTCTCTGTGAATTCGGTATGATGTCAAAT
TTAATAGAGTTTCCTCATTTTTCTTAGTATTTTTTCTCTGACATATTTTT
TTCTGTTGATAAAATTACTTAGTTTTATCAAATATTCGTTTCGGTTTCGA
GCATAAATTAAGGAAGATAGGCTCCTACTCCTAAGGCCTAAAAGCCTGGA
GCTGTCTATTGTGTAGACTAGTTTGAATCATGCTCTCTCTATGTTAGCAT
AGTTATTTGATTTTATTGTTCTTATACTTTTAGAGATGACATTCCATACA
ATAAGAAGACCATCCCAGATACATATTCCAAGTTTCGTCAAGGAGTAGAA
TCTAAAAGCGAAATTCGTGATTTAATTCCTACACCACTAACCCTTAATAA
ACTGCCACCTATCAAAGGTGCCAGTCTTGGTGATATCCCTACAATGGAGA
AGTTGATCGGTGTTCAAAGCTATATACAAGATAACAGAACAGCTGTTCCA
CTAGAAGGTGGTGAAAGTGCTGGCTTGAAACATCTCCAAAAATATCTTTG
GGACACTGATGCCATTTCAACTTACAAAGAAACCAGGAATGGTCTATTAG
GAGAAGAATACTCGACCAAGTTTAGTATCTGGCTTGCTAATGGTTCTTTA
TCTCCAAGACAGATCTACCATGAAGTCAAGAGATATGAAAATCAACGTGT
ATCCAACCAATCCACTTACTGGAGTATCTTTGAACTGATCTGGAGAGATT
ACTTTAAATTTGTATGTTGGAAATATGGGAGAAAAGTGTTCTATTTATCT
GGCATCATGGGCAAACATTTACCTTGGAAACAAGACAAAATTGCTTTTCA
GAAATGGTGTCAAGGTGAGACAGGTGTTCCTTTTGTTGACGCAAATATGA
GAGAGTTACTTCATACAGGCTGGATGTCAAATCGGGGTCGTCAAAACGTG
GCTAGTTTCTTGGTCAAGGACTTGAAATTAGACTGGCGTCTTGGAGCCGA
ATGGTTCGAATCACAACTTCTTGATCATGATGTTTGCAGTAATTATGGTA
ATTGGAATTATTCAGCTGGCATTGGTAATGATCCAAGACAAGACCGTAAA
TTCAATATGATCAAACAAGCTCTTGATTATGATGCTGAAGGAAAATTTGT
GAAAACTTGGGTTCCAGAGCTTACCAATCTTCCTGCTAACAAGATCCATG
TACCTTGGACCATTCCTGACCGAGAGTNGAAGATAGGCTCCTACTCCTAA
GGCCTAAAAGCCTGGAGCTGTCTATTGTGTAGACTAGTTTGAATCATGCT
CTCTCTATGTTAGCATAGTTATTTGATTTTATTGTTCTTATACTTTTAGA
GATGACATTCCATACAATAAGAAGACCATCCCAGATACATATTCCAAGTT
TCGTCAAGGAGTAGAATCTAAAAGCGAAATTCGTGATTTAATTCCTACAC
CACTAACCCTTAATAAACTGCCACCTATCAAAGGTGCCAGTCTTGGTGAT
ATCCCTACAATGGAGAAGTTGATCGGTGTTCAAAGCTATATGCAAGATAA
CAGAACAGCTGTTCCACTAGAAGGTGGTGAAAGTGCTGGCTTGAAACATC
TCCAAAAATATCTTTGGGACACTGATGCCATTTCAACTTACAAAGAAACC
AGGAATGGTCTATTAGGAGAAGAATACTCGACCAAGTTTAGTATCTGGCT
TGCTAATGGTTCTTTATCTCCAAGACAGATCTACCATGAAGTCAAGAGAT
ATGAAAATCAACGTGTATCCAACCAATCCACTTACTGGAGTATCTTTGAA
CTGATCTGGAGAGATTACTTTAAATTTGTATGTTGGAAATATGGGAGAAA
AGTGTTCTATTTATCTGGCATCATGGGCAAACATTTACCTTGGAAACAAG
ACAAAATTGCTTTTCAGAAATGGTGTCAAGGTGAGACAGGTGTTCCTTTT
GTTGACGCAAATATGAGAGAGTTACTTCATACAGGCTGGATGTCAAATCG
GGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAAGGACTTGAAATTAGACT
GGCGTCTTGGAGCCGAATGGTTCGAATCACAACTTCTTGATCATGATGTT
TGCAGTAATTATGGTAATTGGAATTATTCAGCTGGCATTGGTAATGATCC
AAGACAAGACCGTAAATTCAATATGATCAAACAAGCTCTTGATTATGATG
CTGAAGGAAAATTTGTGAAAACTTGGGTTCCAGAGCTTACCAATCTTCCT
GCTAACAAGGTCCATGTACCTTGGACTATTCCTGACCGGGAGCTACAAAG
ATTGGAGTTCTCATTAGGGCAGGACTACCCAAAGCCTATGGTAATGGCAC
CTGAGTGGGGCCGACATACACATAAAACGAACGGTAAAGCATTTCAAAAG
AATGCAGAAAAGCCTCAAAGAGGGATTGATTTTTATTTTAAATCACCAGA
TGCTGGCCCAAGTGGTCAGGGTTCTGCTGGAGGAAAGAAAAACCAAAGGC
GTTAAAATAATCAAATCTATGACGACGTACCGTTGAAATTTTTAAGATTG
GAAATCAAAATCTTTAGTGTGTTCTTGGTATTTTGTGATATCTGACAGGT
CAGATTTACCCTTACTACTATTGCTCAGTGCTGCGTTGTATAGTAAAGTG
AAAATATAAAATACAGTATGCAAGCTAACTTGTTTTGAACGGTTGATACC
ACACATTTATAAAGCCCGAAGGGCTAGATGTCGTGCTTTAAGCTCTTCCA
AGCAAAAAAAAGTGAATATCGCAAAAAGTATTGCTGCTGTTGTTCTCGAA
AACCTGCGAAGCTTTTTATTGTTCAAGCGCTGAAATTCTATTATATCACG
TGACCTAGGTAGGATTTCCCATCTAAACTCGGCACACTTTTCAGCCGAAG
CACGACATCTAGCCATTCGGGCTTTTTAAATCTATGGTTGATACTACTAT
GAATATTATTTGAATGCATACGAGGGTATACGAAAATGGAATTTGTATTG
TGTATTACATATAATGATTCAAGGATATGGGAGGATAGTATTTGTATCAA
AACTAAAAAAAAACAATTTTAGAGAGTATTTTTAGATACTTTTATTTATT
TTGATATAACGTTTTATATAGATTGTGTTTTCATATAATGAAAATTTATT
TTAGCCAATGTCTTTGTTACTATAACTTGTCTTGACTACCATTATATACT
TCAATTACTCATGTACTTTCCTATCCTACCAGTTTTGAACTAGAATCAGA
AGCAATAGAAAATTCAGTTGATCTGCCTGATACTATTCTCTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044238	XLOC_044238	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071178-exon-scaffold_6-1575043694:250712..250932	TCONS_00071178-exon-scaffold_6-1575043694:250712..250932	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1575043694:247199..247338	TCONS_00071178-exon-scaffold_6-1575043694:247199..247338	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1575043694:243827..244134	TCONS_00071178-exon-scaffold_6-1575043694:243827..244134	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1575043694:240540..242483	TCONS_00071178-exon-scaffold_6-1575043694:240540..242483	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1510915933:250712..250932	TCONS_00071178-exon-scaffold_6-1510915933:250712..250932	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1510915933:247199..247338	TCONS_00071178-exon-scaffold_6-1510915933:247199..247338	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1510915933:243827..244134	TCONS_00071178-exon-scaffold_6-1510915933:243827..244134	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1510915933:240540..242483	TCONS_00071178-exon-scaffold_6-1510915933:240540..242483	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1491911889:250712..250932	TCONS_00071178-exon-scaffold_6-1491911889:250712..250932	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1491911889:247199..247338	TCONS_00071178-exon-scaffold_6-1491911889:247199..247338	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1491911889:243827..244134	TCONS_00071178-exon-scaffold_6-1491911889:243827..244134	Clytia hemisphaerica	exon
TCONS_00071178-exon-scaffold_6-1491911889:240540..242483	TCONS_00071178-exon-scaffold_6-1491911889:240540..242483	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:240540..250932 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.60752e-05	0.000209556	3.97403e-10	1.20091e-07	2.04914	2.61992	1.24534	1.28928	0.000732835	0.262468	0.691441	2.91194e-05	0.454694	0	7.96197e-06	0	0.00314335	0.423195	1.81271e-09	0.0234969	1.49504	0.00171941	0.000168945	0.00120168	2.82824	3.44015	0.4429	0.280961	0.00248155	1.43988

Blast

[Close]

BLAST of TCONS_00071178 vs. Swiss-Prot (Human)
Match: CRY1 (Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.727e-41
Identity = 146/537 (27.19%), Postives = 237/537 (44.13%), Query Frame = 2

Query:  233 MKRSVIYLFQNDLRLHDNECLKIAQSKGNFLIPLYCFQPNHFKGTYSFNLPRSGTHRTKFLIESITDLRANLQKLGSNLVVRNESPLSAIKDLVKLCQNSEAPVSSIIYQKEVTSEEIDLEKQIKSFCKEQSIEDYPVWGLSLFHKDDI-PYNKKTIPDTYSKFRQGVESKSEIRDLIPTPLTLNKLPPIKGASLGD-------IPTMEKLIGVQSYMQDNRTAVPLEGGESAGLKHLQKYLWDTDAISTYKETR---NGLLGEEYSTKFSIWLANGSLSPRQIYHEVKRYENQRVSNQSTYWSIF-ELIWRDYFKFVCWKYGRKVFYLSGIMGKHLPWKQDKIAFQKWCQGETGVPFVDANMRELLHTGWMSNRGRQNVASFLVK-DLKLDWRLGAEWFESQLLDHDVCSNYGNWNYSAGIGNDPRQDRKFNMIKQALDYDAEGKFVKTWVPELTNLPANKVHVPWTIPDRELQRLEFSLGQDYPKPMVMAPEWGRHTHKTNGKAFQKNAEKPQRGIDFYFKSPDAGPSGQGSAGG 1804
            M  + ++ F+  LRLHDN  LK      + +  +Y   P  F G+ +      G +R +FL++ + DL ANL+KL S L V    P      L K    ++    SI Y  E   +E D    IK    E  +E       +L+  D I   N    P TY +F Q + SK E  + IP     +++       L D       +P++E+L     +  D  ++    GGE+  L  L+++L     ++ ++  R   N LL     T  S +L  G LS R  Y ++     +   N S   S++ +L+WR++F        R        +   +PW ++  A  KW +G TG P++DA M +L   GW+ +  R  VA FL + DL + W  G + FE  LLD D   N G+W + +      +    +  +      D  G +++ ++P L   PA  ++ PW  P+   +  +  +G +YPKPMV   E  R   +   + +Q+ +    RG+      P + P+G G   G
Sbjct:    1 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP-WFAGSSNV-----GINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL---SIEYDSEPFGKERD--AAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF-QTLISKMEPLE-IPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL----GFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSR--YRGLGLLASVP-SNPNGNGGFMG 515

The following BLAST results are available for this feature:

BLAST of TCONS_00071178 vs. Swiss-Prot (Human)

BLAST of TCONS_00071178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CRY1	5.727e-41	27.19	Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1	[more]

You are here

TCONS_00071178 (transcript) - C. hemisphaerica