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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071060 ID=TCONS_00071060|Name=TCONS_00071060|organism=Clytia hemisphaerica|type=transcript|length=3464bpRun BLAST on NCBI transcript from alignment at scaffold_58:1368216..1392243- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071060 ID=TCONS_00071060|Name=TCONS_00071060|organism=Clytia hemisphaerica|type=transcript|length=24028bp|location=Sequence derived from alignment at scaffold_58:1368216..1392243- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071060 vs. Swiss-Prot (Human)
Match: PDE11 (Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Homo sapiens GN=PDE11A PE=1 SV=2) HSP 1 Score: 542.732 bits (1397), Expect = 1.181e-174 Identity = 309/778 (39.72%), Postives = 468/778 (60.15%), Query Frame = 3
Query: 708 TDTQQKPHLRKAQS-APTYKKNLSNLIRSSVYSGSGVSKHINVENHTGLRDSNESHYLVEIIKDISKDMSLTKVCFKILVNLGFLLNTEKASIFLVHMDGENGFLKLLLNDV-SIAKGVRKEXXXXXXXXXXXXXXXGSGIVGHVAENGQSLIVNDISKFSEYHPIFDSWWTKNTRNALLQPVKNSEGKTIAVIVSSNN--KSGEFVDEDKQIGASFLSYCGISITNALIFELTKEEFERNKMLLEFSHDIFEEQSSLTNAIQKILNKALEMFNCKRASLMLLDDPKEVEERQV-FSKLFQVTSEIDKKEKRFSKFQRDSMVFSSNFD-----PFSDVVADT----KTLKSKNQKKMILSSTPVSSVPA-GILCEDGLISIPVRNNSSQIIGVLKLYDREDVSSTNSLSANEEQLLEAFAIFAGLGINNCIMYDNIVKGQAHQKVALEALSYHTAARQTDVDKLKFASIPSCSKFHLTSFTFDDFSLLDHEMLAAAIRMFMEFGFLKKFQIDYEVLCRFLITVKNNYRRVIYHNWRHAFNVTQSMFAMLTTGKMSEQLSSSECLALLVGCLCHDLDHRGTNNEFQMKTDSPLQKLYGTS-TMEQHHFNCAVTILNSEGNNIFAHLQSQEYRKVMKLLKHAILATDLSNYIRQRDKFSNAVETKSLDTSLSENRAMLRSMLMTASDLSGITKPWDIQKRVVHLVTSEFFHQGDIERDQLHVQPKQMMDRNYILQLPKLQVNFFQFMGIPVYKVLSDYNSLLSPFLEGAKSNKETWFEMN 2993
+ +++ LRKA S PT LS L+ S V I+ + H L+ NE + +E++KDIS D+ LT + +KIL+ + +++ ++ S+FLV +G K L++ + G SS+ + +P G GI+G+V E+G+++ + D + ++ D T++ L P+++S+G+ I V + N + F ++D+++ +L +CGI+I+NA +F +++E+ER++ LLE +D+FEEQ+ L ++KI+++A + C+R S++LL+D +E V F+K F++ S + S ++SM SS D +++VA T + + + +S +LC +P+ N++ QIIGV ++ +R D +++L EAF IF GLGINN IMYD + K A Q VAL+ LSYH + +VDK K A+IP S+ + FDDFSL M+ AA+RMFME G ++KF+IDYE LCR+L+TV+ NYR V+YHNWRHAFNV Q MFAMLTT + L+ E LA++VGCLCHDLDHRGTNN FQ K+ S L +LYGTS T+E HHFN AV IL SEG+NIFA+L S+EY +M+LLK +ILATDL+ Y +R +F V D ++ +R + RSMLMTA DL +TKPW+I ++V LVTSEFF QGD ER +L + P + DRN +LP+LQ+ + + +P+Y+ L N L P L+ +N+ W E++
Sbjct: 150 SSVRRRALLRKASSLPPTTAHILSALLESRVNLPRYPPTAIDYKCH--LKKHNERQFFLELVKDISNDLDLTSLSYKILIFVCLMVDADRCSLFLV--EGAAAGKKTLVSKFFDVHAGTPLLPCSSTENSNEVQVPWGKGIIGYVGEHGETVNIPDAYQDRRFNDEIDKLTGYKTKSLLCMPIRSSDGEIIGVAQAINKIPEGAPFTEDDEKVMQMYLPFCGIAISNAQLFAASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLED---IESPVVKFTKSFELMSPKCSADAENSF--KESMEKSSYSDWLINNSIAELVASTGLPVNISDAYQDPRFDAEADQISGFHIRSVLC------VPIWNSNHQIIGVAQVLNRLD---GKPFDDADQRLFEAFVIFCGLGINNTIMYDQVKKSWAKQSVALDVLSYHATCSKAEVDKFKAANIPLVSELAIDDIHFDDFSLDVDAMITAALRMFMELGMVQKFKIDYETLCRWLLTVRKNYRMVLYHNWRHAFNVCQLMFAMLTTAGFQDILTEVEILAVIVGCLCHDLDHRGTNNAFQAKSGSALAQLYGTSATLEHHHFNHAVMILQSEGHNIFANLSSKEYSDLMQLLKQSILATDLTLYFERRTEFFELVSKGEYDWNIKNHRDIFRSMLMTACDLGAVTKPWEISRQVAELVTSEFFEQGDRERLELKLTPSAIFDRNRKDELPRLQLEWIDSICMPLYQALVKVNVKLKPMLDSVATNRSKWEELH 909 The following BLAST results are available for this feature:
BLAST of TCONS_00071060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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