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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070875 ID=TCONS_00070875|Name=TCONS_00070875|organism=Clytia hemisphaerica|type=transcript|length=2510bp
tttttagtgaaaaaatagTAAACTGAAACAACAGGAAAAAGACTAAAAAT
GGAATGCTTGAGTTGGCAAGAGTTCTTAGAAGCTCTTTTGaagaaagaac
aaaagaaaatgacaCAGTTCAAAGATTTGCCAACTGATCGAAAACGTGTT
GAATTTTGTCTGGCTGATGAAAATATTAATAATTCGTTGCAGAAATGGTT
GGAAAAAAACATCCCTCAAGAGAAGCAGAAGTTGTCAGGAAAATATATGG
AGTTGAAGACGAAGGGTAATAAAGCGTACATCGGTAAGGATAACAATAAA
GCACTTGAGTTGTATAACCAAGCTATGATTCATGCTTGCCAGGGTGAAGA
ATTTGCTCTGGTGCTAGGCAATCGATCAGCTGTTCTGTTCTCTCAGAAAC
GCTTCGAAGAATGTATTACTGATATTGATATTGCACTTTTGAATAACTTT
CCAACAGACAAATTATGGAAGTTATATAAACGGAAAGCTGAAGCGCTGAT
TAAACTTAAACGTTGTCTTCAGGGTAAAATTTTCGTAGACAAAGCACTGG
AGGAATTGCATCGCCTTGGCAACAAGGATGACGAAGTCACAAAATTGACT
GAAATTCTCATAAGTTTAGACGTGGAAAAAGACGAATCTTCTAATTCCAC
CACAAGTGGTAAACTTGTACGACCCGTCGGCGAGTTTAACCCAACAATGA
AGTATGCAAGCTCACATCTGAAAAGGTGTTTCGATAAAACGAAAGGACGA
TATATAATTTCTGATCAGGACATTCTCAAAGGGAGTATTATCCTCTCAGA
GACACCATATGCAGCTGTTTTACTGAAACCTATGTTCAAAACGCACTGTC
AACACTGTTTCACCAAAATATCGCTCCCATTTCCCTGTTACAAATGCATC
GAAGTTCGTTACTGTTCTGAAACTTGTCGCAAAGCATCTTGGGAAGAGTA
TCACTATTTTGAGTGTGGTAGAATCAACTTATTGGACAAACTTGGCATTT
CTCGGTTAGCGATGAGGATCATCTTGGTAACACCTATGCAGACCCTACGA
CTGTTTGAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCAGGTTGTAA
CAATGGAGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTG
TTTCCAATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGT
GCTGCTCTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGA
TTCGGTGGACTCGACCTTCATCGGAGGCTTAATGTTACGTCATATATTAC
AATTGGTCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGC
CAATCAAATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTA
CCCGACAACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCGTCAACT
CGTTTCAAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAa
ggtgaagaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATT
CAAAGAACGACAAAAAGTCTTACAGGAGCAGTACTTTTTCACTTGTTCGT
GTACTCATTGTGAACAAGGTTTGACGTCGGTGAACGAGCTCGATTGCTTC
ATTTGTGAAAAATGTCAAGGAATCCTAAACGATCAAGGATGTTGCCAGAG
TTGTCGGATAACTGATAAGGACCGACTTGTGTATTGTGAAAATATGGAAC
AAACATGCCATGATAATTTCTTGAACGCTCTTTCTTTAATGACCAACAAA
CGAGACGATCAACTGAACATCAAGGCTGCTATCAAGATCTTAAAACGTTG
TCAGAAATCTCGTCTCGCTGTTTTAAGTCCCAATCATAAGAAGTTGNTTA
TTTTGAGTGTTGTAGAATCAACTTATTGGACAAAGTTGGCATTTCTCGGT
TAGCGATGAGGATTATCTTGATAACACCTATGCAGACCCTACGACTGTTT
GAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCGGGTTGTAGCAATGA
AGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTGTTTCCA
ATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGCGCTGCT
CTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGATTCGGC
GGACTCTACTTTCATTGGAGGCCTTATTTTACGTCATATATTACAATTGG
TCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGCCAATCA
AATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTACCCGAC
AACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCATCAACTCGTTTC
AAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAaggtgaa
gaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATTCAAAGA
ACGACAAAAN Run BLAST on NCBI transcript from alignment at scaffold_58:1192480..1194989+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070875 ID=TCONS_00070875|Name=TCONS_00070875|organism=Clytia hemisphaerica|type=transcript|length=2510bp|location=Sequence derived from alignment at scaffold_58:1192480..1194989+ (Clytia hemisphaerica)
tttttagtgaaaaaatagTAAACTGAAACAACAGGAAAAAGACTAAAAAT
GGAATGCTTGAGTTGGCAAGAGTTCTTAGAAGCTCTTTTGaagaaagaac
aaaagaaaatgacaCAGTTCAAAGATTTGCCAACTGATCGAAAACGTGTT
GAATTTTGTCTGGCTGATGAAAATATTAATAATTCGTTGCAGAAATGGTT
GGAAAAAAACATCCCTCAAGAGAAGCAGAAGTTGTCAGGAAAATATATGG
AGTTGAAGACGAAGGGTAATAAAGCGTACATCGGTAAGGATAACAATAAA
GCACTTGAGTTGTATAACCAAGCTATGATTCATGCTTGCCAGGGTGAAGA
ATTTGCTCTGGTGCTAGGCAATCGATCAGCTGTTCTGTTCTCTCAGAAAC
GCTTCGAAGAATGTATTACTGATATTGATATTGCACTTTTGAATAACTTT
CCAACAGACAAATTATGGAAGTTATATAAACGGAAAGCTGAAGCGCTGAT
TAAACTTAAACGTTGTCTTCAGGGTAAAATTTTCGTAGACAAAGCACTGG
AGGAATTGCATCGCCTTGGCAACAAGGATGACGAAGTCACAAAATTGACT
GAAATTCTCATAAGTTTAGACGTGGAAAAAGACGAATCTTCTAATTCCAC
CACAAGTGGTAAACTTGTACGACCCGTCGGCGAGTTTAACCCAACAATGA
AGTATGCAAGCTCACATCTGAAAAGGTGTTTCGATAAAACGAAAGGACGA
TATATAATTTCTGATCAGGACATTCTCAAAGGGAGTATTATCCTCTCAGA
GACACCATATGCAGCTGTTTTACTGAAACCTATGTTCAAAACGCACTGTC
AACACTGTTTCACCAAAATATCGCTCCCATTTCCCTGTTACAAATGCATC
GAAGTTCGTTACTGTTCTGAAACTTGTCGCAAAGCATCTTGGGAAGAGTA
TCACTATTTTGAGTGTGGTAGAATCAACTTATTGGACAAACTTGGCATTT
CTCGGTTAGCGATGAGGATCATCTTGGTAACACCTATGCAGACCCTACGA
CTGTTTGAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCAGGTTGTAA
CAATGGAGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTG
TTTCCAATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGT
GCTGCTCTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGA
TTCGGTGGACTCGACCTTCATCGGAGGCTTAATGTTACGTCATATATTAC
AATTGGTCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGC
CAATCAAATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTA
CCCGACAACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCGTCAACT
CGTTTCAAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAa
ggtgaagaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATT
CAAAGAACGACAAAAAGTCTTACAGGAGCAGTACTTTTTCACTTGTTCGT
GTACTCATTGTGAACAAGGTTTGACGTCGGTGAACGAGCTCGATTGCTTC
ATTTGTGAAAAATGTCAAGGAATCCTAAACGATCAAGGATGTTGCCAGAG
TTGTCGGATAACTGATAAGGACCGACTTGTGTATTGTGAAAATATGGAAC
AAACATGCCATGATAATTTCTTGAACGCTCTTTCTTTAATGACCAACAAA
CGAGACGATCAACTGAACATCAAGGCTGCTATCAAGATCTTAAAACGTTG
TCAGAAATCTCGTCTCGCTGTTTTAAGTCCCAATCATAAGAAGTTGNTTA
TTTTGAGTGTTGTAGAATCAACTTATTGGACAAAGTTGGCATTTCTCGGT
TAGCGATGAGGATTATCTTGATAACACCTATGCAGACCCTACGACTGTTT
GAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCGGGTTGTAGCAATGA
AGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTGTTTCCA
ATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGCGCTGCT
CTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGATTCGGC
GGACTCTACTTTCATTGGAGGCCTTATTTTACGTCATATATTACAATTGG
TCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGCCAATCA
AATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTACCCGAC
AACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCATCAACTCGTTTC
AAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAaggtgaa
gaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATTCAAAGA
ACGACAAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070875-exon-scaffold_58-1491911889:1192480..1194989 | TCONS_00070875-exon-scaffold_58-1491911889:1192480..1194989 | Clytia hemisphaerica | exon |
| TCONS_00070875-exon-scaffold_58-1510915933:1192480..1194989 | TCONS_00070875-exon-scaffold_58-1510915933:1192480..1194989 | Clytia hemisphaerica | exon |
| TCONS_00070875-exon-scaffold_58-1575043694:1192480..1194989 | TCONS_00070875-exon-scaffold_58-1575043694:1192480..1194989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1192480..1194989 + |
Blast
BLAST of TCONS_00070875 vs. Swiss-Prot (Human)
Match: SMYD4 (SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3) HSP 1 Score: 209.92 bits (533), Expect = 6.325e-57 Identity = 174/621 (28.02%), Postives = 282/621 (45.41%), Query Frame = 1
Query: 256 KTKGNKAYIGKDNNKALELYNQAMIHA-CQGEEFALVLGNRSAVLFSQKRFEECITDIDIALLNNFPTDKLWKLYKRKAEALIKLKRC---------LQGKIFVDKALEE---------LHRLGNKDDEVTKLTEILISLDVEKDESSNSTTSGKLVRPVGEFNPTMKYASSHLKRCFDKTKGRYIISDQDILKGSIILSETPYAAVL----LKPMFKT--------------HCQHCFTKISLPFPCYKCIEVRYCSETCRKASWEEYHYFECGRINLLDKLGI-SRLAMRIILVTPMQTLR------------------------------LFEQQDSSKL--TVSSGCNNGGCYDSKEYTSVYHLVSNSQYMIAEDLF-----------QYSCAALLMLKV--LSRFSYIDDSV------DSTFIGGLMLRHILQLVCNAHAITSLSYTDSQSNVV-EQDQVRIATAIYPTTSLLNHSCEPSIVNSFQNERLIVKLTRDVKKGEEIFNCYGPHYRRMEFKERQKVLQEQYFFTCSCTHCEQGLTSVNELDCFICEKCQGILNDQGCCQSCRIT-DKDRLVYCENMEQTCHDNFLNALSLMTNKRDDQLNIKAAIKILK 1845
+ +GNK + KD A LY++ + H+ E+ +L NRSA LF ++E C+ DI+ A + +P K+ RKAE L+ L R L+ AL + LHRL K E LTE + + E + + E N + ASS + C D KGR +++ +DIL G +++ E + +VL L P +C C PC C +YCS+ C + +WE YH EC LL LG+ +A+R+ L+ + +R L E + + + T GC+ G Y++ Y +V++L+ +++ E F Q A+L + + S + +V D T G MLRH+LQL CNA A+T++ +T + ++V + QVR+AT I+P SLLNHSC P+ SF + ++ ++ ++KG+EI +CYGPH RM ERQ+ L+ QYFF C+C C+ T + + G + CC SC D ++ C + ++C ++ ++ L++ +D Q ++ A K+L+
Sbjct: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAA----------LREENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYENN-YNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQ---TEAHRM-------AAGPRWEAFCCNSCGAPMQGDDVLRCGS--RSCAESAVSRDHLVSRLQDLQQQVRVAQKLLR 669 HSP 2 Score: 102.064 bits (253), Expect = 3.932e-22 Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 3
Query: 2202 DSTFIGGLILRHILQLVCNAHAITSLSYTDSQSNVV-EQDQVRIATAIYPTTSLLNHSCEPSIINSFQNERLIVKLTRDVKKGEEIFNCYGPHYRRMEFKERQ 2507
D T G +LRH+LQL CNA A+T++ +T + ++V + QVR+AT I+P SLLNHSC P+ SF + ++ ++ ++KG+EI +CYGPH RM ERQ
Sbjct: 484 DVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQ 586
The following BLAST results are available for this feature:
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