TCONS_00070875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070875
Unique NameTCONS_00070875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070875 ID=TCONS_00070875|Name=TCONS_00070875|organism=Clytia hemisphaerica|type=transcript|length=2510bp
tttttagtgaaaaaatagTAAACTGAAACAACAGGAAAAAGACTAAAAAT
GGAATGCTTGAGTTGGCAAGAGTTCTTAGAAGCTCTTTTGaagaaagaac
aaaagaaaatgacaCAGTTCAAAGATTTGCCAACTGATCGAAAACGTGTT
GAATTTTGTCTGGCTGATGAAAATATTAATAATTCGTTGCAGAAATGGTT
GGAAAAAAACATCCCTCAAGAGAAGCAGAAGTTGTCAGGAAAATATATGG
AGTTGAAGACGAAGGGTAATAAAGCGTACATCGGTAAGGATAACAATAAA
GCACTTGAGTTGTATAACCAAGCTATGATTCATGCTTGCCAGGGTGAAGA
ATTTGCTCTGGTGCTAGGCAATCGATCAGCTGTTCTGTTCTCTCAGAAAC
GCTTCGAAGAATGTATTACTGATATTGATATTGCACTTTTGAATAACTTT
CCAACAGACAAATTATGGAAGTTATATAAACGGAAAGCTGAAGCGCTGAT
TAAACTTAAACGTTGTCTTCAGGGTAAAATTTTCGTAGACAAAGCACTGG
AGGAATTGCATCGCCTTGGCAACAAGGATGACGAAGTCACAAAATTGACT
GAAATTCTCATAAGTTTAGACGTGGAAAAAGACGAATCTTCTAATTCCAC
CACAAGTGGTAAACTTGTACGACCCGTCGGCGAGTTTAACCCAACAATGA
AGTATGCAAGCTCACATCTGAAAAGGTGTTTCGATAAAACGAAAGGACGA
TATATAATTTCTGATCAGGACATTCTCAAAGGGAGTATTATCCTCTCAGA
GACACCATATGCAGCTGTTTTACTGAAACCTATGTTCAAAACGCACTGTC
AACACTGTTTCACCAAAATATCGCTCCCATTTCCCTGTTACAAATGCATC
GAAGTTCGTTACTGTTCTGAAACTTGTCGCAAAGCATCTTGGGAAGAGTA
TCACTATTTTGAGTGTGGTAGAATCAACTTATTGGACAAACTTGGCATTT
CTCGGTTAGCGATGAGGATCATCTTGGTAACACCTATGCAGACCCTACGA
CTGTTTGAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCAGGTTGTAA
CAATGGAGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTG
TTTCCAATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGT
GCTGCTCTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGA
TTCGGTGGACTCGACCTTCATCGGAGGCTTAATGTTACGTCATATATTAC
AATTGGTCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGC
CAATCAAATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTA
CCCGACAACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCGTCAACT
CGTTTCAAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAa
ggtgaagaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATT
CAAAGAACGACAAAAAGTCTTACAGGAGCAGTACTTTTTCACTTGTTCGT
GTACTCATTGTGAACAAGGTTTGACGTCGGTGAACGAGCTCGATTGCTTC
ATTTGTGAAAAATGTCAAGGAATCCTAAACGATCAAGGATGTTGCCAGAG
TTGTCGGATAACTGATAAGGACCGACTTGTGTATTGTGAAAATATGGAAC
AAACATGCCATGATAATTTCTTGAACGCTCTTTCTTTAATGACCAACAAA
CGAGACGATCAACTGAACATCAAGGCTGCTATCAAGATCTTAAAACGTTG
TCAGAAATCTCGTCTCGCTGTTTTAAGTCCCAATCATAAGAAGTTGNTTA
TTTTGAGTGTTGTAGAATCAACTTATTGGACAAAGTTGGCATTTCTCGGT
TAGCGATGAGGATTATCTTGATAACACCTATGCAGACCCTACGACTGTTT
GAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCGGGTTGTAGCAATGA
AGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTGTTTCCA
ATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGCGCTGCT
CTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGATTCGGC
GGACTCTACTTTCATTGGAGGCCTTATTTTACGTCATATATTACAATTGG
TCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGCCAATCA
AATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTACCCGAC
AACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCATCAACTCGTTTC
AAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAaggtgaa
gaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATTCAAAGA
ACGACAAAAN
Run BLAST on NCBI

transcript from alignment at scaffold_58:1192480..1194989+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070875 ID=TCONS_00070875|Name=TCONS_00070875|organism=Clytia hemisphaerica|type=transcript|length=2510bp|location=Sequence derived from alignment at scaffold_58:1192480..1194989+ (Clytia hemisphaerica)
tttttagtgaaaaaatagTAAACTGAAACAACAGGAAAAAGACTAAAAAT
GGAATGCTTGAGTTGGCAAGAGTTCTTAGAAGCTCTTTTGaagaaagaac
aaaagaaaatgacaCAGTTCAAAGATTTGCCAACTGATCGAAAACGTGTT
GAATTTTGTCTGGCTGATGAAAATATTAATAATTCGTTGCAGAAATGGTT
GGAAAAAAACATCCCTCAAGAGAAGCAGAAGTTGTCAGGAAAATATATGG
AGTTGAAGACGAAGGGTAATAAAGCGTACATCGGTAAGGATAACAATAAA
GCACTTGAGTTGTATAACCAAGCTATGATTCATGCTTGCCAGGGTGAAGA
ATTTGCTCTGGTGCTAGGCAATCGATCAGCTGTTCTGTTCTCTCAGAAAC
GCTTCGAAGAATGTATTACTGATATTGATATTGCACTTTTGAATAACTTT
CCAACAGACAAATTATGGAAGTTATATAAACGGAAAGCTGAAGCGCTGAT
TAAACTTAAACGTTGTCTTCAGGGTAAAATTTTCGTAGACAAAGCACTGG
AGGAATTGCATCGCCTTGGCAACAAGGATGACGAAGTCACAAAATTGACT
GAAATTCTCATAAGTTTAGACGTGGAAAAAGACGAATCTTCTAATTCCAC
CACAAGTGGTAAACTTGTACGACCCGTCGGCGAGTTTAACCCAACAATGA
AGTATGCAAGCTCACATCTGAAAAGGTGTTTCGATAAAACGAAAGGACGA
TATATAATTTCTGATCAGGACATTCTCAAAGGGAGTATTATCCTCTCAGA
GACACCATATGCAGCTGTTTTACTGAAACCTATGTTCAAAACGCACTGTC
AACACTGTTTCACCAAAATATCGCTCCCATTTCCCTGTTACAAATGCATC
GAAGTTCGTTACTGTTCTGAAACTTGTCGCAAAGCATCTTGGGAAGAGTA
TCACTATTTTGAGTGTGGTAGAATCAACTTATTGGACAAACTTGGCATTT
CTCGGTTAGCGATGAGGATCATCTTGGTAACACCTATGCAGACCCTACGA
CTGTTTGAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCAGGTTGTAA
CAATGGAGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTG
TTTCCAATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGT
GCTGCTCTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGA
TTCGGTGGACTCGACCTTCATCGGAGGCTTAATGTTACGTCATATATTAC
AATTGGTCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGC
CAATCAAATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTA
CCCGACAACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCGTCAACT
CGTTTCAAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAa
ggtgaagaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATT
CAAAGAACGACAAAAAGTCTTACAGGAGCAGTACTTTTTCACTTGTTCGT
GTACTCATTGTGAACAAGGTTTGACGTCGGTGAACGAGCTCGATTGCTTC
ATTTGTGAAAAATGTCAAGGAATCCTAAACGATCAAGGATGTTGCCAGAG
TTGTCGGATAACTGATAAGGACCGACTTGTGTATTGTGAAAATATGGAAC
AAACATGCCATGATAATTTCTTGAACGCTCTTTCTTTAATGACCAACAAA
CGAGACGATCAACTGAACATCAAGGCTGCTATCAAGATCTTAAAACGTTG
TCAGAAATCTCGTCTCGCTGTTTTAAGTCCCAATCATAAGAAGTTGNTTA
TTTTGAGTGTTGTAGAATCAACTTATTGGACAAAGTTGGCATTTCTCGGT
TAGCGATGAGGATTATCTTGATAACACCTATGCAGACCCTACGACTGTTT
GAACAGCAAGATTCTTCAAAGCTCACTGTATCGTCGGGTTGTAGCAATGA
AGGTTGCTATGACAGCAAAGAATACACAAGTGTCTACCATCTTGTTTCCA
ATAGCCAGTATATGATAGCTGAAGACCTGTTCCAATATTCATGCGCTGCT
CTTCTCATGCTCAAAGTTTTATCTCGATTTTCCTATATCGACGATTCGGC
GGACTCTACTTTCATTGGAGGCCTTATTTTACGTCATATATTACAATTGG
TCTGTAATGCTCATGCGATTACGTCATTGAGTTACACAGACAGCCAATCA
AATGTGGTAGAACAGGATCAGGTACGTATAGCGACGGCCATCTACCCGAC
AACCAGCCTCCTCAACCATTCATGCGAACCTTCGATCATCAACTCGTTTC
AAAATGAACGTTTAATTGTTAAACTGACTCGTGACGTTAAGAAaggtgaa
gaaattttcaattgctaCGGCCCTCATTACCGTCGAATGGAATTCAAAGA
ACGACAAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044077XLOC_044077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070875-exon-scaffold_58-1491911889:1192480..1194989TCONS_00070875-exon-scaffold_58-1491911889:1192480..1194989Clytia hemisphaericaexon
TCONS_00070875-exon-scaffold_58-1510915933:1192480..1194989TCONS_00070875-exon-scaffold_58-1510915933:1192480..1194989Clytia hemisphaericaexon
TCONS_00070875-exon-scaffold_58-1575043694:1192480..1194989TCONS_00070875-exon-scaffold_58-1575043694:1192480..1194989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1192480..1194989 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.26541	3.5088	1.27157	1.50241	2.51702	1.88206	2.19164	1.86856	1.20022	1.3467	1.22471	0.564744	0.949545	0.534375	1.02164	1.44568	2.28316	2.27416	0.0346752	0.464149	1.00202	1.09096	2.99571	3.06699	0.589424	0.652824	0.383825	0.44263	1.79661	2.03111
Blast
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BLAST of TCONS_00070875 vs. Swiss-Prot (Human)
Match: SMYD4 (SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 6.325e-57
Identity = 174/621 (28.02%), Postives = 282/621 (45.41%), Query Frame = 1 
Query:  256 KTKGNKAYIGKDNNKALELYNQAMIHA-CQGEEFALVLGNRSAVLFSQKRFEECITDIDIALLNNFPTDKLWKLYKRKAEALIKLKRC---------LQGKIFVDKALEE---------LHRLGNKDDEVTKLTEILISLDVEKDESSNSTTSGKLVRPVGEFNPTMKYASSHLKRCFDKTKGRYIISDQDILKGSIILSETPYAAVL----LKPMFKT--------------HCQHCFTKISLPFPCYKCIEVRYCSETCRKASWEEYHYFECGRINLLDKLGI-SRLAMRIILVTPMQTLR------------------------------LFEQQDSSKL--TVSSGCNNGGCYDSKEYTSVYHLVSNSQYMIAEDLF-----------QYSCAALLMLKV--LSRFSYIDDSV------DSTFIGGLMLRHILQLVCNAHAITSLSYTDSQSNVV-EQDQVRIATAIYPTTSLLNHSCEPSIVNSFQNERLIVKLTRDVKKGEEIFNCYGPHYRRMEFKERQKVLQEQYFFTCSCTHCEQGLTSVNELDCFICEKCQGILNDQGCCQSCRIT-DKDRLVYCENMEQTCHDNFLNALSLMTNKRDDQLNIKAAIKILK 1845
            + +GNK +  KD   A  LY++ + H+    E+ +L   NRSA LF   ++E C+ DI+ A  + +P     K+  RKAE L+ L R          L+       AL +         LHRL  K  E   LTE   +   +  E +           + E N  +  ASS +  C D  KGR +++ +DIL G +++ E  + +VL    L P                  +C  C        PC  C   +YCS+ C + +WE YH  EC    LL  LG+   +A+R+ L+   + +R                              L E + +  +  T   GC+  G Y++  Y +V++L+ +++    E  F           Q   A+L  +    +   S +  +V      D T  G  MLRH+LQL CNA A+T++ +T  + ++V +  QVR+AT I+P  SLLNHSC P+   SF +    ++ ++ ++KG+EI +CYGPH  RM   ERQ+ L+ QYFF C+C  C+   T  + +         G   +  CC SC      D ++ C +  ++C ++ ++   L++  +D Q  ++ A K+L+
Sbjct:   72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAA----------LREENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYENN-YNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQ---TEAHRM-------AAGPRWEAFCCNSCGAPMQGDDVLRCGS--RSCAESAVSRDHLVSRLQDLQQQVRVAQKLLR 669

HSP 2 Score: 102.064 bits (253), Expect = 3.932e-22
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 3 
Query: 2202 DSTFIGGLILRHILQLVCNAHAITSLSYTDSQSNVV-EQDQVRIATAIYPTTSLLNHSCEPSIINSFQNERLIVKLTRDVKKGEEIFNCYGPHYRRMEFKERQ 2507
            D T  G  +LRH+LQL CNA A+T++ +T  + ++V +  QVR+AT I+P  SLLNHSC P+   SF +    ++ ++ ++KG+EI +CYGPH  RM   ERQ
Sbjct:  484 DVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQ 586
The following BLAST results are available for this feature:
BLAST of TCONS_00070875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMYD46.325e-5728.02SET and MYND domain-containing protein 4 OS=Homo s... [more]
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