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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071025 ID=TCONS_00071025|Name=TCONS_00071025|organism=Clytia hemisphaerica|type=transcript|length=517bp
ATTTCACTCCATAAGATGAAGTTTGGTGAAATGGGAATCGTTTTGCTCTT
GGTTTTTGTCATCTTCACAGAGGcCTCATTACCATGCGGTCCATGTTCCC
ATGGCAATGATAAGAGAGCAGTGTGTGGAAGTGACGGGAGGCGTTATTCG
GATTTCTGTGCTCTTCAAAAGGTTTCCTGTTTGAAAGGCATTCCGATCAT
GGCGGTCAAAGTTGCAGCAGATGACGAGCTCTGTACAGATTGTAACATCT
ACTGTGGCCCATCTCACCAACCAGTTTGTGGGATCGATAATCGAACTTAT
ATGAACGAATGCGTGTTGAGATTCATGGCTTGTCGAAGCAGAAAAGCCAT
CTTTATTCGACATTATGGAAGATGTATTTATACTAGTCCAAGAAGAAACT
CATAAACGACAAAAATAACTGTTTCTCTTTTAACCTTTGGTATTGAAACG
GTTCTAAATATTGTATGATCAAGAAACTGTATGAGGTTAGTCCATAATTT
GAGGTAGATGATCCATC Run BLAST on NCBI protein sequence of TCONS_00071025-protein >TCONS_00071025-protein ID=TCONS_00071025-protein|Name=TCONS_00071025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
ISLHKMKFGEMGIVLLLVFVIFTEASLPCGPCSHGNDKRAVCGSDGRRYS
DFCALQKVSCLKGIPIMAVKVAADDELCTDCNIYCGPSHQPVCGIDNRTY
MNECVLRFMACRSRKAIFIRHYGRCIYTSPRRNS Run BLAST on NCBI transcript from alignment at scaffold_58:1099772..1102712- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071025 ID=TCONS_00071025|Name=TCONS_00071025|organism=Clytia hemisphaerica|type=transcript|length=2941bp|location=Sequence derived from alignment at scaffold_58:1099772..1102712- (Clytia hemisphaerica)
ATTTCACTCCATAAGATGAAGTTTGGTGAAATGGGAATCGTTTTGCTCTT
GGTTTTTGTCATCTTCACAGAGGGTATGTTTTTCGATCAAGTTTGGAAGG
AAACTTTTAACTAACGAATTGAAACTTCAAGAGTAGAGGATTTGGCTCTG
TGGAACACAAAGTTTGTTCAAAAATTTTGACAAGCCGTAAATTCAAAGAT
TGCTTTTGACGGAATAAAATATCATTAACCCTTTCCGGACGAACGTGCCA
AGAGGTGGGCCATACTAGTGACCAAGCTTCAAAGCAATAAATATCGAGAT
CTAACCTTCCCAAGAGCCCGTTCAGCTACCGTTGGAAAGAGTAGAAAATT
AAAAGGAAATTCTTTTTCAAAAAATGCATTTCTCTTGTCCGGAAAGGGTT
AAAAGGGATGCTTCAAGTTTTCTACAAATTAGAAAATGAAGAAATAAATA
AAAGTTTTTTTCTCTATTGGGTCAGAAATTTCATTTTATACGTTTCCAGA
TCTGTTTGCATTACTTTAATGGGATAAATTTTCGCGGGGATTAAATTTCG
CGGTTGAGCTCATCCGCGAAATTTTAAGATTTCGCGGGGATTAATTTTCG
CGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAGCATATCGAGGA
TTTGACCTTTTTCGAGGGTTGCGTGCCCTCATGTAGAAAAAAAATAAAAA
ACGATAAAAATAGAAATTTCGCGGATTGCAAAAAAAAATCGAATTTTTCG
CGGAAACTAATTTTCGCGAATAGGCCTTTTTCAAATTTACAATGGGACTT
ATTTTCGCGGATGACACCCAAATCCGCGAAATCCGCGAAAATTAATCCCC
GCGAAAATTTATCCCATTAAAGTAGATCTTGCATAAGAATTGGCAGTCCA
TACATTTGCAAACTTTGTAGAATTTTCTTAAAGTTTGAAAATGAAGATAA
AAAGAGAAGATTTTTTCTACTTGACCAAAAATTTTTGTTATATATACCTT
GCCGATTTCATGTATTCAAATATTTTTCATATCTTTATTAGGTTGAAAAG
TTACAACCTGTTGCAATAGAGGTCCATTTTGACAATTTTTAGCAATTTAT
TGCCCAGTAGCAGCTTTTTCGGAGGGATGTAACTTTTAATTCAGAAAAGA
TAATTGAAATCAGCGGGGCTCAAAGTTTTAGAAAATTATTTGCTAAAAGT
TTTAAAATATTTTCATTTTCCTTCTTCTTCATTTTCAAATTTTTAGAAAT
TTCTTCAAAGCTCTGCATCAATCTACTCAAAATTATTTTTTCAGCAAGGT
TAGTTAAATATTTTTTCGATCTCACATTACTTGGAGATGTTTAAAAATGT
AGGGACTGCCAATCTTTTGGAACAGAATTAGAATTCATGTACTGTAGAAA
ATTCTTTAAGTAATGCTTGAAATTTCATTACAATTTATAAAACATTTTTT
CAGCCTCATTACCATGCGGTCCATGTTCCCATGGCAATGATAAGAGAGCA
GTGTGTGGAAGTGACGGGAGGCGTTATTCGGATTTCTGTGCTCTTCAAAA
GGTTTCCTGTTTGAAAGGCATTCCGATCATGGCGGTCAAAGTTGCAGCAG
ATGACGAGCTCTGTACAGGTATCTGTTAAGTTTTTCCTACATATTATGCA
GTTTGATTCGGAATTGCAGTGATCAAATTTTTCTTTTGGAGGCTTTTAAA
TTAATTTTGGGGAAAGGGGTCGACGTTGCAACGAATTGAATTTCCCACAA
ACTTTGGGCTCTCAAGTGTTCAAAATTCATTGCATCTCAAAAAAGCTAGA
AAAATTCTACTCAGGATAAACTCGTACCCAGGGCCTGATTCTTATTTTTT
TATAATTTTGATGGTCTTAAGAATCGATATGAAAAGCAAATCGTCATAAG
GACGAGGTTGTACTAAATAATGAGTCATGGAGTATATGCCTTTTTCCTTT
CGTTTTCTTCAGATTGTAACATCTACTGTGGCCCATCTCACCAACCAGTT
TGTGGGATCGATAATCGAACTTATATGAACGAATGCGTGTTGAGATTCAT
GGCTTGTCGAAGCAGAAAAGCCATCTTTATTCGACATTATGGAAGATGTA
TTTATACTAGTCCAAGAAGAAACTCATAAACGACAAAAATAACTGTTTCT
CTTTTAACCTTTGGTATTGAAACGGTTCTAAATATTGTATGATCAAGAAA
CTGTATGAGGTTAGTCCATAATTTGAGGTAGATGATCCATC Coding sequence (CDS) from alignment at scaffold_58:1099772..1102712- >TCONS_00071025 ID=TCONS_00071025|Name=TCONS_00071025|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_58:1099772..1102712- (Clytia hemisphaerica)
ATTGTAACATCTACTGTGGCCCATCTCACCAACCAGTTTGTGGGATCGAT
AATCGAACTTATATGAACGAATGCGTGTTGAGATTCATGGCTTGTCGAAG
CAGAAAAGCCATCTTTATTCGACATTATGGAAGATGTATTTATACTAGTC
CAAGAAGAAACTCATAACCTCATTACCATGCGGTCCATGTTCCCATGGCA
ATGATAAGAGAGCAGTGTGTGGAAGTGACGGGAGGCGTTATTCGGATTTC
TGTGCTCTTCAAAAGGTTTCCTGTTTGAAAGGCATTCCGATCATGGCGGT
CAAAGTTGCAGCAGATGACGAGCTCTGTACAGATTTCACTCCATAAGATG
AAGTTTGGTGAAATGGGAATCGTTTTGCTCTTGGTTTTTGTCATCTTCAC
AGAGGATTGTAACATCTACTGTGGCCCATCTCACCAACCAGTTTGTGGGA
TCGATAATCGAACTTATATGAACGAATGCGTGTTGAGATTCATGGCTTGT
CGAAGCAGAAAAGCCATCTTTATTCGACATTATGGAAGATGTATTTATAC
TAGTCCAAGAAGAAACTCATAACCTCATTACCATGCGGTCCATGTTCCCA
TGGCAATGATAAGAGAGCAGTGTGTGGAAGTGACGGGAGGCGTTATTCGG
ATTTCTGTGCTCTTCAAAAGGTTTCCTGTTTGAAAGGCATTCCGATCATG
GCGGTCAAAGTTGCAGCAGATGACGAGCTCTGTACAGATTTCACTCCATA
AGATGAAGTTTGGTGAAATGGGAATCGTTTTGCTCTTGGTTTTTGTCATC
TTCACAGAGGATTGTAACATCTACTGTGGCCCATCTCACCAACCAGTTTG
TGGGATCGATAATCGAACTTATATGAACGAATGCGTGTTGAGATTCATGG
CTTGTCGAAGCAGAAAAGCCATCTTTATTCGACATTATGGAAGATGTATT
TATACTAGTCCAAGAAGAAACTCATAACCTCATTACCATGCGGTCCATGT
TCCCATGGCAATGATAAGAGAGCAGTGTGTGGAAGTGACGGGAGGCGTTA
TTCGGATTTCTGTGCTCTTCAAAAGGTTTCCTGTTTGAAAGGCATTCCGA
TCATGGCGGTCAAAGTTGCAGCAGATGACGAGCTCTGTACAGATTTCACT
CCATAAGATGAAGTTTGGTGAAATGGGAATCGTTTTGCTCTTGGTTTTTG
TCATCTTCACAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071025-exon-scaffold_58-1575043694:1102640..1102712 | TCONS_00071025-exon-scaffold_58-1575043694:1102640..1102712 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1575043694:1100395..1100559 | TCONS_00071025-exon-scaffold_58-1575043694:1100395..1100559 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1575043694:1099772..1100050 | TCONS_00071025-exon-scaffold_58-1575043694:1099772..1100050 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1510915933:1102640..1102712 | TCONS_00071025-exon-scaffold_58-1510915933:1102640..1102712 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1510915933:1100395..1100559 | TCONS_00071025-exon-scaffold_58-1510915933:1100395..1100559 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1510915933:1099772..1100050 | TCONS_00071025-exon-scaffold_58-1510915933:1099772..1100050 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1491911889:1102640..1102712 | TCONS_00071025-exon-scaffold_58-1491911889:1102640..1102712 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1491911889:1100395..1100559 | TCONS_00071025-exon-scaffold_58-1491911889:1100395..1100559 | Clytia hemisphaerica | exon |
| TCONS_00071025-exon-scaffold_58-1491911889:1099772..1100050 | TCONS_00071025-exon-scaffold_58-1491911889:1099772..1100050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1099772..1102712 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002350 | Kazal_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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