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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071001 ID=TCONS_00071001|Name=TCONS_00071001|organism=Clytia hemisphaerica|type=transcript|length=981bp
ATTTTGTGTATGGTGTTTATTTTACACGACAGCAAAACAAACGTAATAGC
TTTTCATGAAAAACCACCGAGTTGCAAGGATATAACTTAAGTGGGGGAAG
AACATCCATACCACTTAAACTCGGCTATTATTCATGATGGACATGCGACT
CATTTTGATCACTTTGGCGCTTCAATGGAATGCTCTTTATGGGTTTCCAC
TTAAAGaAGAAAGTGACGTTCTTCCTGAACTGGAATACCGAGATTTGCTG
GTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACC
ATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAA
ACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTA
GTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACC
ATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAA
ACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTA
GTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCC
ATCTCAACAAAAAGACGATTTGCTGGTTTCAGAATATTTTCCACCTTTGG
CAAATGATCCTTTACTTGGCTTAGACAATTATTTTCCCCCaggaaaagaa
gattttttatcaaagaaaCGAAACGCCGAACGTGATCAGGAAGATAAGCT
TTTGGAAAGCTTCCTTCATTAAGTCAAGCCACAAACATTTGAACATTGAA
TATTCTTTGATcaagttgaaatattttttggcaAATGCTTTATTTAGATT
AACATGTATTTTTATAAGGCGTTTTCTCTCTACATTTTCGTATTGAAAAA
GTATAATTCAATAAATAACTCATAATTATCCTTCCAACGAACACATAGCA
GCATATGAAAAGATTTTCACCTATTTCTAAC Run BLAST on NCBI protein sequence of TCONS_00071001-protein >TCONS_00071001-protein ID=TCONS_00071001-protein|Name=TCONS_00071001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MMDMRLILITLALQWNALYGFPLKEESDVLPELEYRDLLVSGYIPPQNDP
SDVYLPSQQKDDLLVSGYIPPQNDPSDVYLPSQQKDDLLVSGYIPPQNDP
SDVYLPSQQKDDLLVSGYIPPQNDPSDVYLPSQQKDDLLVSGYIPPQNDP
SDVYLPSQQKDDLLVSEYFPPLANDPLLGLDNYFPPGKEDFLSKKRNAER
DQEDKLLESFLH Run BLAST on NCBI transcript from alignment at scaffold_58:939668..941008- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071001 ID=TCONS_00071001|Name=TCONS_00071001|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at scaffold_58:939668..941008- (Clytia hemisphaerica)
ATTTTGTGTATGGTGTTTATTTTACACGACAGCAAAACAAACGTAATAGC
TTTTCATGAAAAACCACCGAGTTGCAAGGATATAACTTAAGTGGGGGAAG
AACATCCATACCACTTAAACTCGGCTATTATTCATGATGGACATGCGACT
CATTTTGATCACTTTGGCGCTTCAATGGAATGCTCTTTATGGGTTTCCAC
TTAAAGGTATTTTGTTGAGTTTTATTTAACCAATAAAATGTGTCCATTAT
AGCTTTTTTTCTTGAAGTATTTTCTCATTATCACAATATCCCACCTCATT
GATTGTGATTGAAGATGAATTTGATTTCTTTGTATTTTTAGAAGAAAGTG
ACGTTCTTCCTGAACTGGAATACCGAGATTTGCTGGTTTCAGGATACATC
CCACCTCAAAACGACACTTCGGACGTCTACTTACCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATC
CCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATC
CCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATC
CCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTGCCATCTCAACAAAAAGACGATTTGCTGGTTTCAGAATATTTT
CCACCTTTGGCAAATGATCCTTTACTTGGCTTAGACAATTATTTTCCCCC
AGGAAAAGAAGATTTTTTATCAAAGAAACGAAACGCCGAACGTGATCAGG
AAGATAAGCTTTTGGAAAGCTTCCTTCATTAAGTCAAGCCACAAACATTT
GAACATTGAATATTCTTTGATCAAGTTGAAATATTTTTTGGCAAATGCTT
TATTTAGATTAACATGTATTTTTATAAGGCGTTTTCTCTCTACATTTTCG
TATTGAAAAAGTATAATTCAATAAATAACTCATAATTATCCTTCCAACGA
ACACATAGCAGCATATGAAAAGATTTTCACCTATTTCTAAC Coding sequence (CDS) from alignment at scaffold_58:939668..941008- >TCONS_00071001 ID=TCONS_00071001|Name=TCONS_00071001|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_58:939668..941008- (Clytia hemisphaerica)
ATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACCATCTCAACAAAA
AGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGG
ACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATAC
ATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACCATCTCAACAAAA
AGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGG
ACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATAC
ATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAA
AGACGATTTGCTGGTTTCAGAATATTTTCCACCTTTGGCAAATGATCCTT
TACTTGGCTTAGACAATTATTTTCCCCCAGGAAAAGAAGATTTTTTATCA
AAGAAACGAAACGCCGAACGTGATCAGGAAGATAAGCTTTTGGAAAGCTT
CCTTCATTAAAAGAAAGTGACGTTCTTCCTGAACTGGAATACCGAGATTT
GCTGGTTTCAGGATACATGATGGACATGCGACTCATTTTGATCACTTTGG
CGCTTCAATGGAATGCTCTTTATGGGTTTCCACTTAAAGATCCCACCTCA
AAACGACCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTGC
TAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTG
CCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCA
AAACGACCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTGC
TAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTG
CCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCA
AAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGC
TGGTTTCAGAATATTTTCCACCTTTGGCAAATGATCCTTTACTTGGCTTA
GACAATTATTTTCCCCCAGGAAAAGAAGATTTTTTATCAAAGAAACGAAA
CGCCGAACGTGATCAGGAAGATAAGCTTTTGGAAAGCTTCCTTCATTAAA
AGAAAGTGACGTTCTTCCTGAACTGGAATACCGAGATTTGCTGGTTTCAG
GATACATGATGGACATGCGACTCATTTTGATCACTTTGGCGCTTCAATGG
AATGCTCTTTATGGGTTTCCACTTAAAGATCCCACCTCAAAACGACCCTT
CGGACGTCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGA
TACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACA
AAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTT
CGGACGTCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGA
TACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACA
AAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTT
CGGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTGGTTTCAGAA
TATTTTCCACCTTTGGCAAATGATCCTTTACTTGGCTTAGACAATTATTT
TCCCCCAGGAAAAGAAGATTTTTTATCAAAGAAACGAAACGCCGAACGTG
ATCAGGAAGATAAGCTTTTGGAAAGCTTCCTTCATTAAAAGAAAGTGACG
TTCTTCCTGAACTGGAATACCGAGATTTGCTGGTTTCAGGATACATGATG
GACATGCGACTCATTTTGATCACTTTGGCGCTTCAATGGAATGCTCTTTA
TGGGTTTCCACTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071001-exon-scaffold_58-1575043694:940803..941008 | TCONS_00071001-exon-scaffold_58-1575043694:940803..941008 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1575043694:940612..940667 | TCONS_00071001-exon-scaffold_58-1575043694:940612..940667 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1575043694:939668..940386 | TCONS_00071001-exon-scaffold_58-1575043694:939668..940386 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1510915933:940803..941008 | TCONS_00071001-exon-scaffold_58-1510915933:940803..941008 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1510915933:940612..940667 | TCONS_00071001-exon-scaffold_58-1510915933:940612..940667 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1510915933:939668..940386 | TCONS_00071001-exon-scaffold_58-1510915933:939668..940386 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1491911889:940803..941008 | TCONS_00071001-exon-scaffold_58-1491911889:940803..941008 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1491911889:940612..940667 | TCONS_00071001-exon-scaffold_58-1491911889:940612..940667 | Clytia hemisphaerica | exon |
| TCONS_00071001-exon-scaffold_58-1491911889:939668..940386 | TCONS_00071001-exon-scaffold_58-1491911889:939668..940386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:939668..941008 - |
Blast
The following BLAST results are available for this feature:
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