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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070983 ID=TCONS_00070983|Name=TCONS_00070983|organism=Clytia hemisphaerica|type=transcript|length=5757bpRun BLAST on NCBI protein sequence of TCONS_00070983-protein >TCONS_00070983-protein ID=TCONS_00070983-protein|Name=TCONS_00070983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=805bp LSTSNLLSFRIISFRFGKIKMASCSLEFFCAGCNKTTQGLSWSKRRNVIARun BLAST on NCBI transcript from alignment at scaffold_58:754895..785632- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070983 ID=TCONS_00070983|Name=TCONS_00070983|organism=Clytia hemisphaerica|type=transcript|length=30738bp|location=Sequence derived from alignment at scaffold_58:754895..785632- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:754895..785632- >TCONS_00070983 ID=TCONS_00070983|Name=TCONS_00070983|organism=Clytia hemisphaerica|type=CDS|length=50778bp|location=Sequence derived from alignment at scaffold_58:754895..785632- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070983 vs. Swiss-Prot (Human)
Match: ELP2 (Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=1 SV=2) HSP 1 Score: 608.601 bits (1568), Expect = 0.000e+0 Identity = 353/822 (42.94%), Postives = 506/822 (61.56%), Query Frame = 2
Query: 86 FCAGCNKTTQGLSWSK-RRNVIAYASSHSAVLYKPSVHNEAYKIEAILNKHRDRVNCTQWIEKEN----SELVTGSVDKTINIWHNSDDKWRCKQTLSGHTGAIESLATYTSKDTKE----TFXXXXXXXXXXXXWKASSDTDFECIQTISFGNGFALSIALSELPNDQGVILAVGRDDTSIALYGLNGIGQFEQVISLHGHEDWVRCLAFQHNGKELMLASSSQDTFIRLWKITKK-----TKEDEN---ADESVTLETQSFKAYSTDFMVVLDSVLIGHEGWVLGLSWNP---KAGA----SCLVSASMDRTLILWEYDQENEIWMDKARFGEVGGNTLGYYGCAFSGCGNSLIAHGYQGSFQLWNRDEQD--KWSSSITISGHFGQVEDFDWCADGDFAITASTDQTTRLFVPWQR-DDVKSTWHEIGRPQIHGYDMKCISILNKYKYVSGAQEKVARVFTAPKSFYNSLTCITKLTKDESTLEE---LPVGATVPVLGLSNKAVFEGDIHSWKEQNKEESKQMKASAFANEDPAPFNPTLQAVPPVEDILLQHTLWPELQKLYGHGFELFCLTSDAQGSTVATACKASTAEHANILIWDTSTWLQTDSLTNAHTLTVTQMAFSKSGKYLLSVSRDRTWALHRR----SGDGNHKFSLVQKTDKKTSVHTRIIWACDWAFDDQYFVTVSRDKKALVWG-----NDAQTQTWCAQGSPLDQSEAITAVSVYGKMTSSGRYLIALGTESGKVSIYEW--------LNEWHHVTSVPQTLTPCLTIKRLRWRPLN-EYEQHQRRSAYQLGVAS--SDHSFRI 2401
FC N+ L+WS R ++A+ +S S VLY P + LN H RVNC QWI K++ +ELV+G D + W D++ L GH G + ++ + T + T I SA+ADS++R+W + + C+QT++FGNGFAL++ LS LPN ILA G DD I ++ QF++V+SL GHEDW+R + + G++L LAS SQD IR+WK+ K T++D+N + + T+E +S K F V L++VL GHE WV + W P K G L+SASMD+T+ILW D+E+ +W+++ R GEVGGNTLG+Y C F+ G+ +IAH + G+ LW ++ + +W+ I ISGHF V+D W +G+F IT TDQTTRLF PW+R D + TWHEI RPQIHGYD+KC++++N++++VSGA EKV RVF+AP++F + IT + + + LP GATVP LGLSNKAVF+GDI S Q +E + + ++ F + A F P++ PP ED LLQ+TLWPE+QKLYGHG+E+FC+T ++ + +A+ACKA+ EHA I++W+T++W Q +L H+LTVTQMAFS + K+LL+VSRDRTW+L ++ S + FSL T+K TSVH+RIIW+CDW+ D +YF T SRDKK +VWG +D S LD A+TAVSV + S RY++A+G E GK+ +Y W +N+W H Q+ + L I++L W+ + + EQ + A L AS DH+ +I
Sbjct: 12 FCCP-NRVRGVLNWSSGPRGLLAFGTSCSVVLYDPL----KRVVVTNLNGHTARVNCIQWICKQDGSPSTELVSGGSDNQVIHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRRTSDPALCTLIVSAAADSAVRLW-SKKGPEVMCLQTLNFGNGFALALCLSFLPNTDVPILACGNDDCRIHIFAQQN-DQFQKVLSLCGHEDWIRGVEWAAFGRDLFLASCSQDCLIRIWKLYIKSTSLETQDDDNIRLKENTFTIENESVK---IAFAVTLETVLAGHENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDCQFNEDGSMIIAHAFHGALHLWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEGEFIITVGTDQTTRLFAPWKRKDQSQVTWHEIARPQIHGYDLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITGQSLNHVLCNQDSDLPEGATVPALGLSNKAVFQGDIAS---QPSDEEELLTSTGFEYQQVA-FQPSILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNSSKTLLASACKAAKKEHAAIILWNTTSWKQVQNLV-FHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQDTISPEFEPVFSLFAFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLDVGGAVTAVSVCPVLHPSQRYVVAVGLECGKICLYTWKKTDQVPEINDWTHCVETSQSQSHTLAIRKLCWKNCSGKTEQKEAEGAEWLHFASCGEDHTVKI 818 The following BLAST results are available for this feature:
BLAST of TCONS_00070983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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