TCONS_00070983-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070983-protein
Unique NameTCONS_00070983-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070983-protein ID=TCONS_00070983-protein|Name=TCONS_00070983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=805bp
LSTSNLLSFRIISFRFGKIKMASCSLEFFCAGCNKTTQGLSWSKRRNVIA
YASSHSAVLYKPSVHNEAYKIEAILNKHRDRVNCTQWIEKENSELVTGSV
DKTINIWHNSDDKWRCKQTLSGHTGAIESLATYTSKDTKETFIASASADS
SIRIWKASSDTDFECIQTISFGNGFALSIALSELPNDQGVILAVGRDDTS
IALYGLNGIGQFEQVISLHGHEDWVRCLAFQHNGKELMLASSSQDTFIRL
WKITKKTKEDENADESVTLETQSFKAYSTDFMVVLDSVLIGHEGWVLGLS
WNPKAGASCLVSASMDRTLILWEYDQENEIWMDKARFGEVGGNTLGYYGC
AFSGCGNSLIAHGYQGSFQLWNRDEQDKWSSSITISGHFGQVEDFDWCAD
GDFAITASTDQTTRLFVPWQRDDVKSTWHEIGRPQIHGYDMKCISILNKY
KYVSGAQEKVARVFTAPKSFYNSLTCITKLTKDESTLEELPVGATVPVLG
LSNKAVFEGDIHSWKEQNKEESKQMKASAFANEDPAPFNPTLQAVPPVED
ILLQHTLWPELQKLYGHGFELFCLTSDAQGSTVATACKASTAEHANILIW
DTSTWLQTDSLTNAHTLTVTQMAFSKSGKYLLSVSRDRTWALHRRSGDGN
HKFSLVQKTDKKTSVHTRIIWACDWAFDDQYFVTVSRDKKALVWGNDAQT
QTWCAQGSPLDQSEAITAVSVYGKMTSSGRYLIALGTESGKVSIYEWLNE
WHHVTSVPQTLTPCLTIKRLRWRPLNEYEQHQRRSAYQLGVASSDHSFRI
LNFYL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044117XLOC_044117Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070983TCONS_00070983Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 143..157
score: 33.41
coord: 239..253
score: 34.19
coord: 95..109
score: 35.71
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 68..108
e-value: 2.4E-4
score: 30.4
coord: 604..644
e-value: 0.004
score: 26.4
coord: 333..372
e-value: 490.0
score: 0.0
coord: 557..601
e-value: 5.4
score: 12.4
coord: 378..417
e-value: 0.09
score: 21.9
coord: 211..252
e-value: 7.6E-8
score: 42.1
coord: 113..156
e-value: 2.4E-5
score: 33.7
coord: 657..695
e-value: 0.046
score: 22.9
coord: 282..323
e-value: 8.5E-6
score: 35.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 214..252
e-value: 4.8E-5
score: 23.9
coord: 75..107
e-value: 0.17
score: 12.7
coord: 288..322
e-value: 0.12
score: 13.2
coord: 383..416
e-value: 0.017
score: 15.9
coord: 114..156
e-value: 1.4E-4
score: 22.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 289..332
score: 11.377
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 75..107
score: 10.408
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 218..261
score: 11.478
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 120..159
score: 10.575
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 29..146
e-value: 1.1E-15
score: 56.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 548..803
e-value: 9.0E-23
score: 80.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 147..321
e-value: 1.0E-27
score: 96.6
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 380..490
e-value: 4.4E-6
score: 25.1
NoneNo IPR availableGENE3D1.10.10.670coord: 322..379
e-value: 1.7E-4
score: 20.9
NoneNo IPR availableCDDcd00200WD40coord: 73..416
e-value: 8.03304E-40
score: 147.867
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 75..426
score: 26.841
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 32..204
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 591..694
coord: 141..259
coord: 287..418

Blast
[Close]
BLAST of TCONS_00070983-protein vs. Swiss-Prot (Human)
Match: ELP2 (Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=1 SV=2)

HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 353/822 (42.94%), Postives = 506/822 (61.56%), Query Frame = 0 
Query:   29 FCAGCNKTTQGLSWSK-RRNVIAYASSHSAVLYKPSVHNEAYKIEAILNKHRDRVNCTQWIEKEN----SELVTGSVDKTINIWHNSDDKWRCKQTLSGHTGAIESLATYTSKDTKE----TFIASASADSSIRIWKASSDTDFECIQTISFGNGFALSIALSELPNDQGVILAVGRDDTSIALYGLNGIGQFEQVISLHGHEDWVRCLAFQHNGKELMLASSSQDTFIRLWKITKK-----TKEDEN---ADESVTLETQSFKAYSTDFMVVLDSVLIGHEGWVLGLSWNP---KAGA----SCLVSASMDRTLILWEYDQENEIWMDKARFGEVGGNTLGYYGCAFSGCGNSLIAHGYQGSFQLWNRDEQD--KWSSSITISGHFGQVEDFDWCADGDFAITASTDQTTRLFVPWQR-DDVKSTWHEIGRPQIHGYDMKCISILNKYKYVSGAQEKVARVFTAPKSFYNSLTCITKLTKDESTLEE---LPVGATVPVLGLSNKAVFEGDIHSWKEQNKEESKQMKASAFANEDPAPFNPTLQAVPPVEDILLQHTLWPELQKLYGHGFELFCLTSDAQGSTVATACKASTAEHANILIWDTSTWLQTDSLTNAHTLTVTQMAFSKSGKYLLSVSRDRTWALHRR----SGDGNHKFSLVQKTDKKTSVHTRIIWACDWAFDDQYFVTVSRDKKALVWG-----NDAQTQTWCAQGSPLDQSEAITAVSVYGKMTSSGRYLIALGTESGKVSIYEW--------LNEWHHVTSVPQTLTPCLTIKRLRWRPLN-EYEQHQRRSAYQLGVAS--SDHSFRI 800
            FC   N+    L+WS   R ++A+ +S S VLY P        +   LN H  RVNC QWI K++    +ELV+G  D  +  W   D++      L GH G + ++     + T +    T I SA+ADS++R+W +    +  C+QT++FGNGFAL++ LS LPN    ILA G DD  I ++      QF++V+SL GHEDW+R + +   G++L LAS SQD  IR+WK+  K     T++D+N    + + T+E +S K     F V L++VL GHE WV  + W P   K G       L+SASMD+T+ILW  D+E+ +W+++ R GEVGGNTLG+Y C F+  G+ +IAH + G+  LW ++  +  +W+  I ISGHF  V+D  W  +G+F IT  TDQTTRLF PW+R D  + TWHEI RPQIHGYD+KC++++N++++VSGA EKV RVF+AP++F  +   IT  + +     +   LP GATVP LGLSNKAVF+GDI S   Q  +E + + ++ F  +  A F P++   PP ED LLQ+TLWPE+QKLYGHG+E+FC+T ++  + +A+ACKA+  EHA I++W+T++W Q  +L   H+LTVTQMAFS + K+LL+VSRDRTW+L ++    S +    FSL   T+K TSVH+RIIW+CDW+ D +YF T SRDKK +VWG     +D          S LD   A+TAVSV   +  S RY++A+G E GK+ +Y W        +N+W H     Q+ +  L I++L W+  + + EQ +   A  L  AS   DH+ +I
Sbjct:   12 FCCP-NRVRGVLNWSSGPRGLLAFGTSCSVVLYDPL----KRVVVTNLNGHTARVNCIQWICKQDGSPSTELVSGGSDNQVIHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRRTSDPALCTLIVSAAADSAVRLW-SKKGPEVMCLQTLNFGNGFALALCLSFLPNTDVPILACGNDDCRIHIFAQQN-DQFQKVLSLCGHEDWIRGVEWAAFGRDLFLASCSQDCLIRIWKLYIKSTSLETQDDDNIRLKENTFTIENESVK---IAFAVTLETVLAGHENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDCQFNEDGSMIIAHAFHGALHLWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEGEFIITVGTDQTTRLFAPWKRKDQSQVTWHEIARPQIHGYDLKCLAMINRFQFVSGADEKVLRVFSAPRNFVENFCAITGQSLNHVLCNQDSDLPEGATVPALGLSNKAVFQGDIAS---QPSDEEELLTSTGFEYQQVA-FQPSILTEPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNSSKTLLASACKAAKKEHAAIILWNTTSWKQVQNLV-FHSLTVTQMAFSPNEKFLLAVSRDRTWSLWKKQDTISPEFEPVFSLFAFTNKITSVHSRIIWSCDWSPDSKYFFTGSRDKKVVVWGECDSTDDCIEHNIGPCSSVLDVGGAVTAVSVCPVLHPSQRYVVAVGLECGKICLYTWKKTDQVPEINDWTHCVETSQSQSHTLAIRKLCWKNCSGKTEQKEAEGAEWLHFASCGEDHTVKI 818
The following BLAST results are available for this feature:
BLAST of TCONS_00070983-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELP20.000e+042.94Elongator complex protein 2 OS=Homo sapiens GN=ELP... [more]
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