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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070817 ID=TCONS_00070817|Name=TCONS_00070817|organism=Clytia hemisphaerica|type=transcript|length=1326bp
CGAATATTGGCAAGTTTATCGTCATATAATTCTGCACAAAATGCCTCATA
AAGCTAGTCCAAGTCGATATTCATGACAGTAAGGTCACTTTGAGAAGGCA
CATACACCAATAGTGGCAAAGAAGACGGATGAAATAGAAAACTTTTTTGT
CATGGTTATAATTataccaaaaagaaaaacaaatttgttttatcGATACA
GACGAAACAAAGTTTACAACATTATGACTGCATGTGATAGGTCAACGGCC
CAAAGGACCCCCTTGAAATGTTATGGATGTAAGAAGAGAATTCGGAGTCG
TTTTTATGTTGACTTTATGGGTAGCCCATGGCATGAGAATTGTTTACGAT
GTGACGTTTGTGAAGAGATTTTGTTTAGTTTTGGTTCTGGTAAATGTTAT
TGTAGAGATGGCCAAAAGTTATGTCTCATGGATTATATAAAGCTCTATGG
AAAAACTGGTACTTGTTCGCGGTGCAAATTAGTTATTTCTCCGACCGAAA
AAGTGATGAAGTGCAAAGGCTTCACTTACCATCAACAATGTTTTCACTGT
TCCATATGTAAACGTTATTTCGACAAAGGTGAAATAGTACGAATACCTAA
CGAGGGTACCATTGTTTGTTCTTTACATCAACACTGTGGAACAGTCTTTA
ATACCTAGTTCAATTGAGAGATAAACATGCCAAAGAGGAAGAAGTTGGTT
GGAAGGATAGATAATTTATCCAAACAAAGACATTTGGAAGGTGTtcattg
atgaatttcattAAAAGTGTTTACCATATGAATTGAACAATCAAATACCA
CTGAAATTAAGACGGAGTCCCTCTGATTGGCGAAATCATTAGTTTCGTGC
ACCAGTCACCACAGTTACATATTGTGTATGCAAATAATCTAATGGGGAAC
AGTCTAAAGATAAATTACTNAAGGATAGATAATTTATCCAAATAAAGAAA
TTTGGAAGGTGTtcattgatgaatttcattAAAAGTGTTTACCATATGAA
TTGAACAATCAAATACCACTGAAATTAAGACGGAGTCCCTCTGATTGGCG
AAATCATTAGTTTCGTGCACCAGTCACCACAGTTACATATTGTGTATGCA
AATAATCTAATGGGGAACAGTCTAAAGATAAATTACTTTTGTTTTATGTA
CTTTAAATGACATTACAATGGTTCGGTATGCTAGGTAGGTATCTCTTAga
aaatattcttcatttttcatctcttTATAAACAATTCTGATATGATATTA
ACAACcatgttgaatttttttgtctttctaAAAGTGTACAATATTGTAAA
TAATTTCCAAGTAAGATCAATTAAAC Run BLAST on NCBI protein sequence of TCONS_00070817-protein >TCONS_00070817-protein ID=TCONS_00070817-protein|Name=TCONS_00070817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MVIIIPKRKTNLFYRYRRNKVYNIMTACDRSTAQRTPLKCYGCKKRIRSR
FYVDFMGSPWHENCLRCDVCEEILFSFGSGKCYCRDGQKLCLMDYIKLYG
KTGTCSRCKLVISPTEKVMKCKGFTYHQQCFHCSICKRYFDKGEIVRIPN
EGTIVCSLHQHCGTVFNT Run BLAST on NCBI transcript from alignment at scaffold_58:602663..606559+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070817 ID=TCONS_00070817|Name=TCONS_00070817|organism=Clytia hemisphaerica|type=transcript|length=3897bp|location=Sequence derived from alignment at scaffold_58:602663..606559+ (Clytia hemisphaerica)
CGAATATTGGCAAGTTTATCGTCATATAATTCTGCACAAAATGCCTCATA
AAGCTAGTCCAAGTCGATATTCATGACAGTAAGGTCACTTTGAGAAGGCA
CATACACCAATAGTGGCAAAGAAGACGGATGAAATAGAAAACTTTTTTGT
CATGGTTATAATTataccaaaaagaaaaacaaatttgttttatcGATACA
GACGAAACAAAGTTTACAACATTATGACTGCATGTGATAGGTCAACGGCC
CAAAGGACCCCCTTGAAATGTTATGGATGTAAGAAGAGAATTCGGAGTCG
TTTTTATGTTGACTTTATGGGTAGCCCATGGCATGAGAATTGTTTACGAT
GTGACGTTTGTGAAGAGATTTTGTTTAGTTTTGGTTCTGGTAAATGTTAT
TGTAGAGATGGCCAAAAGTTATGTCTCATGGATTATATAAAGTAagtgct
catttcaattttAGATACATAAACAGGTTATATGAAAAGTACTGTATTTT
CGATGATTTCTAGGGTgaatataataatataataccAACAAACGCAAAAA
GCTCCATTAAAATTTATGGGTATTACCACAATTGGAGTAAGTAAGTTTAC
TTCATTTCAAGATCTTCATAGATATCGTCACGTCATCATTTCCTTTGAAT
CAAAAGTCTTTCTAAAAGATCACTGTACAATCTTTGTTTCGTCCAAATAC
TTGAACTATATCCTTATACTATGTCATAAATAAGACAACTTTTTTAATGC
ATCTTATCAACGAAGTTATTAAAGATGAAAGTACAGGGTGATTCAAAAAA
AACCGCACCCCTACCTAGACCTAGACTTTTTGACGtaacttttttctatt
tattttacagTTCCATTTTTTATGAAGATTTATTCTCTTACTATTTTCAA
TCAAtgacaagctttattttttcgataaaattatACAAAGAATTCATGAT
GAGTctgttattccattttcaaacaaaatcaaactACATTTTAGCGACGA
Aattactcaaataaaaaaaattattttacagtttcattttccatgaaaat
tttttctcttaCTATTTTCAAAAACGTCGAActttattttatcaaacaac
TATAGAAGGAATTTATAAATAGCTTGTTATttcaaggacacttgtatagc
gtagctaTACAAGTATCCTTGGTTATTTCATTTGGAAGCAAAATCAAACT
ACATTTTTTTGACGAAATGactcaagtaaaaaaaattattttgcagtttc
atttttcaagattttttctctaactattttcaaaaacgtcgaaatttatt
ttatcaaacaacTATAGAAGGAAATTATGAAGAGCTTGTTATTTCATTTG
GAAGCAAAACCAAACTACATTTTTTCGACGAAATTACTcaagtagaaaaa
atatttaacagtttcatttttcatgaagactttttttcactaacaatttt
caaacactgtaaaacattattttgtCGTTATTGAATTATACAAAGAATTT
ATGAATAATTATATTCGCACAATGGCTAACTTTATTCTGTCGTTGAAATT
GTGCAAAGAATTTATGGCGAGTCtgttatttcattttcaaataaaatcaa
acCAGCACATTTTGTCGATGAAATCGCTCAAGTAGAATAATTATTTTGCA
GTTTCattcatatttcaaaaagattttttctgtaactattttcaataaat
tacAAACTTTATTTTATCGGTAAAATTATACAAAGAATTTATGACGATTT
TGTTATTCcattttgaagcaaaatcaAACTACATTTTATCGACGAATTTA
CTTAAGTAAAGACATTATTCTACGGTTTAATTTTTCATGGAGATTTATTC
TCTAACTATTTTCAATCATAATGACAAACTTTATTTTGTCAATGAAATTA
TACAAAGAATTTATGATGAGTctattatttcattttcaaacaaaatcaaa
ctACATTTTTTCGACGAAATTGCTCAagtagaaaaattattttacagttt
cattcatttttcaaaatgattttttctgttaCTATTTTCAATCAATGACA
AACtttattttatcaataaaattatacaaagaATTTATGACGATTTTGTT
ATtcaattttgaagcaaaatcaAACTACATTTTATCGACGAATTTACTCA
AGTAAAGACATTATTCTACGGTTTAATTTTTCATGGAGATTTATTTTCTA
ATTATATTCAATCAATGACAAGCTTAATTTTGTCAATGAAATTATACAAA
GAATTTATGATGAGTCTGTTATTCcattttgaagcaaaattaAACTCCAT
CGCCGAAATTTATCGAAGAAATTATTCcagtaaaaaaaatattacttttt
tcaaacaatttcaatttttatggtTTATCAAACAATTATAGAAGGAATTT
AGAGTTtgttatttcattttcaaataaaatcaaactCCATCGTCGAAATT
TACTCAAGTAAAAAAACTATTCTACGGTTTCATTTTTCAAGCAGATTTAT
TCTCTTACCATTTTCAATCAATGACAAActttaatttgtttttgaaatca
TACAAAGAATTTATGATGTGTctgatatttcatttttaaacaaaatcaaT
CGACAATTTATCGACGAAATTATTCCagtgaaataaaatttaatactatt
ttcaaataatttcaatttttattttgtcgATGAATTTATACAAAGAATTA
ATGACGAGTCTGTtgcattttcaaacaaaatcaaacgaCATTTTATCGAC
GAAATCACTTAGGTAGAAAAAATATTCTGTAGTTTCATTTTTGATGAAGA
TTCATTCTCttacaattttcaaacaatgtaaaattttattttgtcgTTAT
TAAATTATACAAAGAACTTATAGAAAAGAAGTCATAAGAATTATTTTTGA
ACAATGTTTAACTTTATTTTGTCGTTTGAATTGTGCAATTATTCTTTAGT
TTGATTTTTGCGTCATGATAATTCAATTTAAAGGAATGAATTATTTCTGT
ATTCTCCTCTAGGCTCTATGGAAAAACTGGTACTTGTTCGCGGTGCAAAT
TAGTTATTTCTCCGACCGAAAAAGTGATGAAGTGCAAAGGCTTCACTTAC
CATCAACAATGTTTTCACTGTTCCATATGTAAACGTTATTTCGACAAAGG
TGAAATAGTACGAATACCTAACGAGGGTACCATTGTTTGTTCTTTACATC
AACACTGTGGAACAGTCTTTAATACCTAGTTCAATTGAGAGATAAACATG
CCAAAGAGGAAGAAGTTGGTTGGAAGGATAGATAATTTATCCAAACAAAG
ACATTTGGAAGGTGTtcattgatgaatttcattAAAAGTGTTTACCATAT
GAATTGAACAATCAAATACCACTGAAATTAAGACGGAGTCCCTCTGATTG
GCGAAATCATTAGTTTCGTGCACCAGTCACCACAGTTACATATTGTGTAT
GCAAATAATCTAATGGGGAACAGTCTAAAGATAAATTACTNAAGGATAGA
TAATTTATCCAAATAAAGAAATTTGGAAGGTGTtcattgatgaatttcat
tAAAAGTGTTTACCATATGAATTGAACAATCAAATACCACTGAAATTAAG
ACGGAGTCCCTCTGATTGGCGAAATCATTAGTTTCGTGCACCAGTCACCA
CAGTTACATATTGTGTATGCAAATAATCTAATGGGGAACAGTCTAAAGAT
AAATTACTTTTGTTTTATGTACTTTAAATGACATTACAATGGTTCGGTAT
GCTAGGTAGGTATCTCTTAgaaaatattcttcatttttcatctcttTATA
AACAATTCTGATATGATATTAACAACcatgttgaatttttttgtctttct
aAAAGTGTACAATATTGTAAATAATTTCCAAGTAAGATCAATTAAAC Coding sequence (CDS) from alignment at scaffold_58:602663..606559+ >TCONS_00070817 ID=TCONS_00070817|Name=TCONS_00070817|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_58:602663..606559+ (Clytia hemisphaerica)
ATGGTTATAATTataccaaaaagaaaaacaaatttgttttatcGATACAG
ACGAAACAAAGTTTACAACATTATGACTGCATGTGATAGGTCAACGGCCC
AAAGGACCCCCTTGAAATGTTATGGATGTAAGAAGAGAATTCGGAGTCGT
TTTTATGTTGACTTTATGGGTAGCCCATGGCATGAGAATTGTTTACGATG
TGACGTTTGTGAAGAGATTTTGTTTAGTTTTGGTTCTGGTAAATGTTATT
GTAGAGATGGCCAAAAGTTATGTCTCATGGATTATATAAAGCTCTATGGA
AAAACTGGTACTTGTTCGCGGTGCAAATTAGTTATTTCTCCGACCGAAAA
AGTGATGAAGTGCAAAGGCTTCACTTACCATCAACAATGTTTTCACTGTT
CCATATGTAAACGTTATTTCGACAAAGGTGAAATAGTACGAATACCTAAC
GAGGGTACCATTGTTTGTTCTTTACATCAACACTGTGGAACAGTCTTTAA
TACCTAGATGGTTATAATTataccaaaaagaaaaacaaatttgttttatc
GATACAGACGAAACAAAGTTTACAACATTATGACTGCATGTGATAGGTCA
ACGGCCCAAAGGACCCCCTTGAAATGTTATGGATGTAAGAAGAGAATTCG
GAGTCGTTTTTATGTTGACTTTATGGGTAGCCCATGGCATGAGAATTGTT
TACGATGTGACGTTTGTGAAGAGATTTTGTTTAGTTTTGGTTCTGGTAAA
TGTTATTGTAGAGATGGCCAAAAGTTATGTCTCATGGATTATATAAAGCT
CTATGGAAAAACTGGTACTTGTTCGCGGTGCAAATTAGTTATTTCTCCGA
CCGAAAAAGTGATGAAGTGCAAAGGCTTCACTTACCATCAACAATGTTTT
CACTGTTCCATATGTAAACGTTATTTCGACAAAGGTGAAATAGTACGAAT
ACCTAACGAGGGTACCATTGTTTGTTCTTTACATCAACACTGTGGAACAG
TCTTTAATACCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070817-exon-scaffold_58-1491911889:602663..603103 | TCONS_00070817-exon-scaffold_58-1491911889:602663..603103 | Clytia hemisphaerica | exon |
| TCONS_00070817-exon-scaffold_58-1510915933:602663..603103 | TCONS_00070817-exon-scaffold_58-1510915933:602663..603103 | Clytia hemisphaerica | exon |
| TCONS_00070817-exon-scaffold_58-1575043694:602663..603103 | TCONS_00070817-exon-scaffold_58-1575043694:602663..603103 | Clytia hemisphaerica | exon |
| TCONS_00070817-exon-scaffold_58-1491911889:605675..606559 | TCONS_00070817-exon-scaffold_58-1491911889:605675..606559 | Clytia hemisphaerica | exon |
| TCONS_00070817-exon-scaffold_58-1510915933:605675..606559 | TCONS_00070817-exon-scaffold_58-1510915933:605675..606559 | Clytia hemisphaerica | exon |
| TCONS_00070817-exon-scaffold_58-1575043694:605675..606559 | TCONS_00070817-exon-scaffold_58-1575043694:605675..606559 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:602663..606559 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001781 | Znf_LIM |
Blast
BLAST of TCONS_00070817 vs. Swiss-Prot (Human)
Match: LMO4 (LIM domain transcription factor LMO4 OS=Homo sapiens GN=LMO4 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.063e-20 Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 2
Query: 242 STAQRTPL--------KCYGCKKRIRSRFYVDFMGSPWHENCLRCDVCEEILFSFGSGKCYCRDGQKLCLMDYIKLYGKTGTCSRCKLVISPTEKVMKCKGFTYHQQCFHCSICKRYFDKGE 583
S++Q P+ +C GC +I RF + M S WH CL+C C+ L G+ CY + G LC DYI+L+G +G CS C I +E VM+ +G YH +CF CS C+ G+
Sbjct: 6 SSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGT-SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGD 126
The following BLAST results are available for this feature:
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