|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070973 ID=TCONS_00070973|Name=TCONS_00070973|organism=Clytia hemisphaerica|type=transcript|length=1393bp
GTGTATATTTGCTGACGGTTCATTtaaagagtttgaatttctaaCTTCCT
aattagaaaaatgaaagtcAAATTTAAAACTGAACTTTTTGCACGAGGGA
AAGGCAACTATGAAGTTGACACTTTGCATCATATTGACGCTTCTACCATT
TGTCGATGCGCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGATTTC
TAGGAAGTCACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAA
ATCACATTGGTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAGATGC
CACGAGTTACGCTGATAAGATATTGATTTGCGACCGCGATACATTGCTTA
GATCGTCATGCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGTGATT
GACTTTAGTTCGTACAAAGATCAACAAATCGAACAAGTGATTGATATCTT
GAAGAACCGAGTTGGAATCTATATCATGATTAGTACGGACGCTGTGTACG
AAGTCAGCGAGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTCGAAA
AATAAACCTGAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAA
GTATGGGGCAGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGG
AACGACTCGGTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTATTGGA
GAACGAGATACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGAACCT
TCACCAACATTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAAGATC
ACAAATTCAGCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAA
ATCATTCACGAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTT
CAAAGAAGACATCACATTGACTAAGATTCTGGACTTCATGCAGAAATATT
ACAAGCTTGAGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTC
CGATACCCAACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTGAGAT
TCTCCTAGATTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCgactt
gtaaattttttgacGAGGCTATGGTGAATCCAATATATGCTAAAGAGCGT
GAGATCGCTTTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTTTTGA
TGACGAAGATATGTTTATATATGTTTTGACTAAATTGTATTCATCAACGG
TATTTAATGGTATTGATATAGGACTTGGTGAGATTGACTCAGACAACCTT
TTGGCAGAATCCAGTAATGAAGATGAAGACGAAGAtataaaagatttgaa
agaagaactTGATGTCAAACGCATGCCGTGGCCAGACCGGTGT Run BLAST on NCBI protein sequence of TCONS_00070973-protein >TCONS_00070973-protein ID=TCONS_00070973-protein|Name=TCONS_00070973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MKLTLCIILTLLPFVDAHKKRILIFGGNGFLGSHLVKGLADSGEDYEITL
VNRGNAYFNSDKDATSYADKILICDRDTLLRSSCPGLLGKSKYDVVIDFS
SYKDQQIEQVIDILKNRVGIYIMISTDAVYEVSEKHHSERTREEDSKNKP
EDLKKREELVKNNKYGAAKKGCEERLMVQRERLGFPYVILRLADAIGERD
TSYRWWNYQLWMNLHQHFNHKVALPNGVKDHKFSMVYAGDVAKAIMKIIH
EPEVFHDKVINLAFKEDITLTKILDFMQKYYKLEKASYEHEDEKGFFRYP
TAERGPIDVTNAEILLDWEPTPFEEAAKATCKFFDEAMVNPIYAKEREIA
LAEFIEETLPESFDDEDMFIYVLTKLYSSTVFNGIDIGLGEIDSDNLLAE
SSNEDEDEDIKDLKEELDVKRMPWPDRC Run BLAST on NCBI transcript from alignment at scaffold_58:594361..598161- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070973 ID=TCONS_00070973|Name=TCONS_00070973|organism=Clytia hemisphaerica|type=transcript|length=3801bp|location=Sequence derived from alignment at scaffold_58:594361..598161- (Clytia hemisphaerica)
GTGTATATTTGCTGACGGTTCATTTAAAGAGTTTGAATTTCTAACTTCCT
AATTAGAAAAATGAAAGTCAAATTTAAAACTGAACTTTTTGCACGAGGGA
AAGGCAACTATGAAGTTGACACTTTGCATCATATTGACGCTTCTACCATT
TGTCGATGCGCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGATTTC
TAGGAAGTCACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAA
ATCACATTGGTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAGATGC
CACGAGTTACGCTGATAAGATATTGATTTGCGACCGCGATACATTGCTTA
GATCGTCATGCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGTGATT
GACTTTAGTTCGTACAAAGATCAACAAATCGAACAAGTGATTGATATCTT
GAAGAACCGAGTTGGAATCTATATCATGATTAGTACGGACGCTGTGTACG
AAGTCAGCGAGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTCGAAA
AATAAACCTGAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAA
GTATGGGGCAGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGG
AACGACTCGGTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTATTGGT
GAGTATATCGTCTGAGATTAAGAACCCTTTTCTCATTTAAATCAAATGGA
CAGCTGGTAATATAATACAGATATTACTAAGTTCTATAGTTAAGACTATT
CAGAAAAACAGTTACGGTCTCTAATGCGGTGTTCTACTATTTGATATGCT
CCGTTATTCGATAATATCGAAAGTCCCCGTCGACAAGAAGCTCTCATAAA
CGACTATTATTCAACACGCCCCCTTGTTATTCGATGAAAATCCGATTCCC
TTTGATTATTGAATTAGAGAACGTCAACTATATAATAACTTGTACGATGC
ATAAAGGGCTTGTACCAATAGCGAGCACCTCACCAAAAACCGGGATTTTT
CAATGTGTAAAAACGCGGGTGACGTCTAGTATAGGCTATTGCACCAATCT
TAATTACAATTGAGATCGTTACATATCTAAAATTATCTAACTTCAGGAGA
ACGAGATACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGAACCTTC
ACCAACATTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAAGATCAC
AAATTCAGCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAAAT
CATTCACGAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTTCA
AAGAAGACATCACATTGACTAAGATTCTGGACTTCATGCAGAAATATTAC
AAGCTTGAGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTCCG
ATACCCAACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTGAGATTC
TCCTAGATTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCGACTTGT
AAATTTTTTGACGAGGCTATGGTGAATCCAATATATGCTAAAGAGCGTGA
GATCGCTTTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTTTTGATG
ACGAAGATATGTTTATATATGTTTTGACTAAATTGTATTCATCAACGGTA
TTTAATGGTATTGATATAGGACTTGGTGAGATTGACTCAGACAACCTTTT
GGCAGAATCCAGTAATGAAGATGAAGACGAAGATATAAAAGATTTGAAAG
AAGAACTGTAATTATTGAAAAAAAAGAATTAATATCTTCTACTCTTAGGT
TCCAAATAAACGCCCCCCCGCTTGTTAATTTTTCGAAAATTTTCCAACCC
CCCCGGACCTTATTAGGACCCCCCCGTTTATTAATCTCTAAGAATATTTT
CAGCTGTCAAAGAGAAGGCCCCGGCTACTTTGCTCTAAATAGCCTGATTT
TAGTCTATTTTTACCTTATTTTTGGGTTTCAGAAGTACAATTTCCAACCC
CCCCGGACCTTATTAGGACCCCCCCGTTTATTAATCTCTAAGAATATTTT
CAGCTGTCAAAGAGAAGGCCCCGGCTACTTTGCTCTAAATAGCCTGATTT
TAGTCTATTTTTACCTTATTTTTGGGTTTCAGAAGTACAATTTCCAACCC
CCCCGGCAATTAGGTCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCC
CGTTTATTCGAACCCCCCCCGTTTATTTGGAACCTAAGAGTACATAAAAG
TTTCATTGTATACATTTGTCTCTCTCTAATTCGATCTTCAAGGGACCAAG
GATTTTCTTCGAATTAGAAAAATATCTAAATTACAGAAAGGATCTTATAC
CAATCTCTAGCTGGGGGAAAAATATTTAAATTCGAATTATCGAAAGATTC
GAATTAGAGAGAGTTGGCTGCAAACACCCCTGTGTCACAGACCCGCTCTG
GAAAATTTGGCAAAAATCTCTTCCCCGGTGGGAAAAATACCCTAGATTTT
AAGCCCCACTGAGAGATTGACTTTGATTTCATCCCCATTCAAAATTCATT
GTTTAGAATTTGCACTCCAAAACCATGCCCACTGGATTTTTTAATTTTGC
AACAATAGAAATTTTATCCTCATTGAGATTTCAATCGAAATTCTTATCCC
CGCTGTAGGAAAGATTTTCACCGGGGCTGTGAGACAGGGGTGTTATAAAA
ATTGACCTTTACATAGCTTTTCACAGAGTTGCATACTTCTGATGTTATTA
CTTTGTATAAATATGTACGGGATTGCGATTCTGCAGTGAATGTTCTTAGA
TACCGCTAGCTATGTAGGGAAAATTTGCTAATCAGCTGGACTAGGTCTAC
CCAAATTTATAGTGCATAAATTATGTTAAATTTGAATATACATGACGTCA
AAAAATTGCCAGAGGTCAATAAAAAACATCTCAACCTTTTTTAACGACGA
TGTAATCAAAGTTATGTTATTAAAGAAAATCTCTTTCTGACATAATCGCT
GACTTTCTATAAGAGACCTGACGTCATCCTAAAGTTACAACGCGTCAACT
CATAATTTTAGGTTGATCTCGTGCAGAACGCATGCTTGCCTGGGTAGATG
AATGCAGCTAAAATTACCATACACGCACCGTCTAGAGACCTTTTTATAAG
AAAGTGTATTTTTGCTAACGAATAGCTCAGATATATTACTCAAAATAAAC
ATTTAGAAATTTAAACCTCAATACAAATAATGTTTTAGGACCTTACTAAA
TAGGCTAACTCTATAAGCCAGCTGATAAATGATGCTAAATTTAACTTTCT
AAACTGGTAGGTCCTTAAATGATTCAAATACAGTGCTTGCCCACAAAGTT
CTTATAAATCTAAACTGTCATTAACTTAATCTCGTGAATAGAAAATTAAG
CAGCTCATTATACAAGTAAGCAGGAAAAACTGTCAAAAGAAATTAATTAG
TCGCTTTTTTGTATTGTTAATATGCTAAGATAATTTGACTGCAATGAGAT
CATTGTTTCTTTTCCAGTGATGTCAAACGCATGCCGTGGCCAGACCGGTG
T Coding sequence (CDS) from alignment at scaffold_58:594361..598161- >TCONS_00070973 ID=TCONS_00070973|Name=TCONS_00070973|organism=Clytia hemisphaerica|type=CDS|length=3852bp|location=Sequence derived from alignment at scaffold_58:594361..598161- (Clytia hemisphaerica)
TGATGTCAAACGCATGCCGTGGCCAGACCGGTGTGAGAACGAGATACTTC
GTACCGCTGGTGGAATTATCAGCTCTGGATGAACCTTCACCAACATTTCA
ACCATAAAGTTGCACTACCTAATGGAGTCAAAGATCACAAATTCAGCATG
GTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAAATCATTCACGAGCC
TGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTTCAAAGAAGACATCA
CATTGACTAAGATTCTGGACTTCATGCAGAAATATTACAAGCTTGAGAAA
GCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTCCGATACCCAACTGC
CGAACGCGGTCCTATAGATGTTACAAATGCTGAGATTCTCCTAGATTGGG
AGCCAACTCCTTTTGAAGAAGCTGCGAAAGCGACTTGTAAATTTTTTGAC
GAGGCTATGGTGAATCCAATATATGCTAAAGAGCGTGAGATCGCTTTAGC
GGAATTCATCGAGGAAACACTACCTGAAAGTTTTGATGACGAAGATATGT
TTATATATGTTTTGACTAAATTGTATTCATCAACGGTATTTAATGGTATT
GATATAGGACTTGGTGAGATTGACTCAGACAACCTTTTGGCAGAATCCAG
TAATGAAGATGAAGACGAAGATATAAAAGATTTGAAAGAAGAACTATGAA
GTTGACACTTTGCATCATATTGACGCTTCTACCATTTGTCGATGCGCATA
AGAAGCGTATTTTGATATTCGGCGGTAACGGATTTCTAGGAAGTCACTTG
GTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAAATCACATTGGTCAA
TAGAGGAAATGCCTATTTCAATTCAGACAAAGATGCCACGAGTTACGCTG
ATAAGATATTGATTTGCGACCGCGATACATTGCTTAGATCGTCATGCCCA
GGTTTGCTCGGGAAATCAAAATACGACGTAGTGATTGACTTTAGTTCGTA
CAAAGATCAACAAATCGAACAAGTGATTGATATCTTGAAGAACCGAGTTG
GAATCTATATCATGATTAGTACGGACGCTGTGTACGAAGTCAGCGAGAAG
CACCACTCGGAACGGACTAGAGAGGAAGATTCGAAAAATAAACCTGAGGA
TTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAAGTATGGGGCAGCGA
AGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGGAACGACTCGGTTTT
CCGTACGTTATCTTGCGGCTGGCTGATGCTATTGTGATGTCAAACGCATG
CCGTGGCCAGACCGGTGTGAGAACGAGATACTTCGTACCGCTGGTGGAAT
TATCAGCTCTGGATGAACCTTCACCAACATTTCAACCATAAAGTTGCACT
ACCTAATGGAGTCAAAGATCACAAATTCAGCATGGTTTACGCTGGAGACG
TTGCAAAAGCAATTATGAAAATCATTCACGAGCCTGAAGTTTTCCATGAT
AAAGTCATTAATTTAGCTTTCAAAGAAGACATCACATTGACTAAGATTCT
GGACTTCATGCAGAAATATTACAAGCTTGAGAAAGCTTCTTATGAGCACG
AGGACGAGAAAGGATTTTTCCGATACCCAACTGCCGAACGCGGTCCTATA
GATGTTACAAATGCTGAGATTCTCCTAGATTGGGAGCCAACTCCTTTTGA
AGAAGCTGCGAAAGCGACTTGTAAATTTTTTGACGAGGCTATGGTGAATC
CAATATATGCTAAAGAGCGTGAGATCGCTTTAGCGGAATTCATCGAGGAA
ACACTACCTGAAAGTTTTGATGACGAAGATATGTTTATATATGTTTTGAC
TAAATTGTATTCATCAACGGTATTTAATGGTATTGATATAGGACTTGGTG
AGATTGACTCAGACAACCTTTTGGCAGAATCCAGTAATGAAGATGAAGAC
GAAGATATAAAAGATTTGAAAGAAGAACTATGAAGTTGACACTTTGCATC
ATATTGACGCTTCTACCATTTGTCGATGCGCATAAGAAGCGTATTTTGAT
ATTCGGCGGTAACGGATTTCTAGGAAGTCACTTGGTCAAAGGTTTAGCAG
ACTCTGGAGAAGATTATGAAATCACATTGGTCAATAGAGGAAATGCCTAT
TTCAATTCAGACAAAGATGCCACGAGTTACGCTGATAAGATATTGATTTG
CGACCGCGATACATTGCTTAGATCGTCATGCCCAGGTTTGCTCGGGAAAT
CAAAATACGACGTAGTGATTGACTTTAGTTCGTACAAAGATCAACAAATC
GAACAAGTGATTGATATCTTGAAGAACCGAGTTGGAATCTATATCATGAT
TAGTACGGACGCTGTGTACGAAGTCAGCGAGAAGCACCACTCGGAACGGA
CTAGAGAGGAAGATTCGAAAAATAAACCTGAGGATTTGAAGAAGAGAGAG
GAACTGGTGAAGAATAATAAGTATGGGGCAGCGAAGAAAGGTTGTGAAGA
AAGATTAATGGTTCAACGGGAACGACTCGGTTTTCCGTACGTTATCTTGC
GGCTGGCTGATGCTATTGTGATGTCAAACGCATGCCGTGGCCAGACCGGT
GTGAGAACGAGATACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGA
ACCTTCACCAACATTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAA
GATCACAAATTCAGCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTAT
GAAAATCATTCACGAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAG
CTTTCAAAGAAGACATCACATTGACTAAGATTCTGGACTTCATGCAGAAA
TATTACAAGCTTGAGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATT
TTTCCGATACCCAACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTG
AGATTCTCCTAGATTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCG
ACTTGTAAATTTTTTGACGAGGCTATGGTGAATCCAATATATGCTAAAGA
GCGTGAGATCGCTTTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTT
TTGATGACGAAGATATGTTTATATATGTTTTGACTAAATTGTATTCATCA
ACGGTATTTAATGGTATTGATATAGGACTTGGTGAGATTGACTCAGACAA
CCTTTTGGCAGAATCCAGTAATGAAGATGAAGACGAAGATATAAAAGATT
TGAAAGAAGAACTATGAAGTTGACACTTTGCATCATATTGACGCTTCTAC
CATTTGTCGATGCGCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGA
TTTCTAGGAAGTCACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTA
TGAAATCACATTGGTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAG
ATGCCACGAGTTACGCTGATAAGATATTGATTTGCGACCGCGATACATTG
CTTAGATCGTCATGCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGT
GATTGACTTTAGTTCGTACAAAGATCAACAAATCGAACAAGTGATTGATA
TCTTGAAGAACCGAGTTGGAATCTATATCATGATTAGTACGGACGCTGTG
TACGAAGTCAGCGAGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTC
GAAAAATAAACCTGAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATA
ATAAGTATGGGGCAGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAA
CGGGAACGACTCGGTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070973-exon-scaffold_58-1575043694:597464..598161 | TCONS_00070973-exon-scaffold_58-1575043694:597464..598161 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1575043694:596355..597015 | TCONS_00070973-exon-scaffold_58-1575043694:596355..597015 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1575043694:594361..594394 | TCONS_00070973-exon-scaffold_58-1575043694:594361..594394 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1510915933:597464..598161 | TCONS_00070973-exon-scaffold_58-1510915933:597464..598161 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1510915933:596355..597015 | TCONS_00070973-exon-scaffold_58-1510915933:596355..597015 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1510915933:594361..594394 | TCONS_00070973-exon-scaffold_58-1510915933:594361..594394 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1491911889:597464..598161 | TCONS_00070973-exon-scaffold_58-1491911889:597464..598161 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1491911889:596355..597015 | TCONS_00070973-exon-scaffold_58-1491911889:596355..597015 | Clytia hemisphaerica | exon |
| TCONS_00070973-exon-scaffold_58-1491911889:594361..594394 | TCONS_00070973-exon-scaffold_58-1491911889:594361..594394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:594361..598161 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0050662 | coenzyme binding |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0050662 |
coenzyme binding |
Blast
The following BLAST results are available for this feature:
|
