TCONS_00070957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070957
Unique NameTCONS_00070957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070957 ID=TCONS_00070957|Name=TCONS_00070957|organism=Clytia hemisphaerica|type=transcript|length=354bp
AGCAGTTGTTTTGATTGGAGCTTGTGTTGTGGTAGTTTCAGTTTGTTTCT
TGGGCAGTTCATAGATATACTCATAGTAGTTATTACCAAAACATTGCTGA
CCAGGTCTACAATcctcaaaataattattgataCAATCATAAGTATGGGT
CACAGGtgtattatctttcaaaatctttgcaTACCCTGCTTGATCTTTGG
TAGCAAGACAAGCTTGATAGTCAGAAACAGCGAATGCAATGTCGCCATTC
TCTTGAGCCTTGATTGCACATTCACACATCATATCTTCATTGAGGAAGCT
TTCCACTAACAAGTGGTCGAAAACTTTTGGCGACCTCTTATAACAGCCGA
TAAT
Run BLAST on NCBI

transcript from alignment at scaffold_58:445174..445588-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070957 ID=TCONS_00070957|Name=TCONS_00070957|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_58:445174..445588- (Clytia hemisphaerica)
AGCAGTTGTTTTGATTGGAGCTTGTGTTGTGGTAGTTTCAGTTTGTTTCT
TGGGCAGTTCATAGATATACTCATAGTAGTTATTACCAAAACATTGCTGA
CCAGGTCTACAATCCTCAAAATAATTATTGATACAATCATAAGTATGGGT
CACAGGTGATTTATCTTTCAAAATCTTTGCATACCCTGCTTGATCTNTCA
TAAGTATGGGTCACAGGTGTATTATCTTTCAAAATCTTTGCATACCCTGC
TTGATCTTTGGTAGCAAGACAAGCTTGATAGTCAGAAACAGCGAATGCAA
TGTCGCCATTCTCTTGAGCCTTGATTGCACATTCACACATCATATCTTCA
TTGAGGAAGCTTTCCACTAACAAGTGGTCGAAAACTTTTGGCGACCTCTT
ATAACAGCCGATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044102XLOC_044102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070957-exon-scaffold_58-1575043694:445434..445588TCONS_00070957-exon-scaffold_58-1575043694:445434..445588Clytia hemisphaericaexon
TCONS_00070957-exon-scaffold_58-1575043694:445174..445372TCONS_00070957-exon-scaffold_58-1575043694:445174..445372Clytia hemisphaericaexon
TCONS_00070957-exon-scaffold_58-1510915933:445434..445588TCONS_00070957-exon-scaffold_58-1510915933:445434..445588Clytia hemisphaericaexon
TCONS_00070957-exon-scaffold_58-1510915933:445174..445372TCONS_00070957-exon-scaffold_58-1510915933:445174..445372Clytia hemisphaericaexon
TCONS_00070957-exon-scaffold_58-1491911889:445434..445588TCONS_00070957-exon-scaffold_58-1491911889:445434..445588Clytia hemisphaericaexon
TCONS_00070957-exon-scaffold_58-1491911889:445174..445372TCONS_00070957-exon-scaffold_58-1491911889:445174..445372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:445174..445588 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.899432	0	0.483989	2.52409	2.10146	2.95616	4.05027	3.08634	0.854885	0	1.94855	4.75036	1.49579	0	0.34866	0.807234	0.415152	0	0	0.375508	0.49807	0.773799	0.424281	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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