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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070776 ID=TCONS_00070776|Name=TCONS_00070776|organism=Clytia hemisphaerica|type=transcript|length=2061bp
AAAAAAGAAtgtacaaaaaatttaaatcctgacgctcacaatatctcgac
aaacctgtatacttttttttggtgcacccggtataagaTGGTATGGGCtt
agagtttgaatttcccagatcctaataacggttgaaaacatagccaatca
aattttgttattgttttactGGTCAcgcgaaatttggtttttattttagt
aagtgaggacagtgCTAAAATCGAATTTCCCagtgtaaattttttgaggc
agaaatctgcctcacaggtcatacccgtTCTGTATACATCAGATCATAAA
AATACAGGATGGTTCTCCTGTCTACTTCTCATTATAAGTTGGagttaaaa
tattttatgataaaaattgaattttctaGATTTAGTAATTATTTACATGT
AGGAACtttaaaattactttaaaattgatttttattttcagaatatACAT
CTTTGTTTAATTGATTACATAAAAATTTTGGAACAATTGAGTAATTGTTG
CGTTTTGGGCGTTTCATCTTCTTTATTTTGCCTCTTCATTTCGTTGCGAT
TTTTAATGGCTCCTCAAGATTTGAGTCTGAAAATGACCGTTTCCTTTTTC
GGTTCGATGATGTTGTTGAATTTAAAAAGTGGGTCATAAAAGAACGTTCC
CCTTAGACATCGAGAATTTACCTCCCCAACTTGGTTTATCTTGACGATTT
TAACTACACATTTTATCTGCGTTTCTTTTTAGGTGAttaaaaaaatctag
aaaaaaagttcatttGATAATTGATATGGATCGGTATATTGTGCAAGCTG
TTTGCTTGGTTTTATTTGTTTGCCAAGGTGTTCACACTTTGGACTGTTAC
AAATGCATTGGCCAGCAATGCCCAACTGATCTCTCAGCTGCACCAAACGA
AACTTGCACTGGAGATCAAATATGCATCAATCAAGTCAATTACAGAAATA
ATACAGTCACGTTGGTAATAAGGCAATGTACTGATCGGGTAGAGTGCACT
AACAAATGTACCGATCCTGACCCTGATTTAAATGTGGATTGCCCCTTTTG
TTGTGAGACTGATCTTTGCAACATAAACTCACCATCTCCAGTTCAACCGA
CCGGCTCACCCACCACACCAGGCGGTGGGTCGACAACCACTGTCGCGTTA
GCCGTTTTGATCCCCGCCATGGTTTTCGGGCAATTCCTTCAAAAATGCGC
AAATTAATTTGAAGATGCATAAAAACGGTGATGTGATGATTACGTTTTTT
AACTGCACAACAAAGCAAAATCATGTTCAGTTTGGTATGATTAAACATTC
TTGATCTAATTTTacataaattttatattttaatacTATTTCAATTGTCA
TTTGGTAGATATCTGAACCACAAGGGTAGTAGGGTATGATCGGAACGGAT
CTCTGaatccaaaactttttgaaaaactaaatttaaGTTAGAGAACGATT
GGTTTTAGTGCCTTAAGAGACcctataataataaaataaaaggaTTTCTC
ATGTAGAAGTCTTATGCGGATACAAGAATGATTTCGGATAGCATAGCGAC
ATTAGTTGTTTTATGTAAGGTTAATATTTTTacctacactttttttttat
aattttacttaatcataaaaatattttaatcagGTGCTCGGTGAGATTAG
TCATTTATACTGGAATTCTTTGTATATTTTACCGAAGGGGGTACTTAATG
TGTTCCCAACAAAAATAGACCATCAACATTAAATTAAGTTTTTGTGgtca
atattattttttgagaaaataaaaaaccccgaaataaaaaaaggattaat
ttttgctcaaattttatcaaaacttttctggTTTGTGTGTAAGGATGCGA
TTTTCAAAGTTTAACTTCTGTTTTCAGTCGAACGTACTGGTTATTTTCTG
GCCGATCCCCCCCCGGTAAATACTGTTACTAGTTTATACTGATTTGTATT
TAATATTTTCTTCTAAGAATAAACTTATCTTtttgattctaaaaacttta
ttaCTTCATTAGTCAAGACAGTCAATTATCattaatcaaaaaaaaaaatc
atagctTGCAA Run BLAST on NCBI protein sequence of TCONS_00070776-protein >TCONS_00070776-protein ID=TCONS_00070776-protein|Name=TCONS_00070776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MDRYIVQAVCLVLFVCQGVHTLDCYKCIGQQCPTDLSAAPNETCTGDQIC
INQVNYRNNTVTLVIRQCTDRVECTNKCTDPDPDLNVDCPFCCETDLCNI
NSPSPVQPTGSPTTPGGGSTTTVALAVLIPAMVFGQFLQKCAN Run BLAST on NCBI transcript from alignment at scaffold_58:154776..157488+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070776 ID=TCONS_00070776|Name=TCONS_00070776|organism=Clytia hemisphaerica|type=transcript|length=2713bp|location=Sequence derived from alignment at scaffold_58:154776..157488+ (Clytia hemisphaerica)
AAAAAAGAAtgtacaaaaaatttaaatcctgacgctcacaatatctcgac
aaacctgtatacttttttttggtgcacccggtataagaTGGTATGGGCtt
agagtttgaatttcccagatcctaataacggttgaaaacatagccaatca
aattttgttattgttttactGGTCAcgcgaaatttggtttttattttagt
aagtgaggacagtgCTAAAATCGAATTTCCCagtgtaaattttttgaggc
agaaatctgcctcacaggtcatacccgtTCTGTATACATCAGATCATAAA
AATACAGGATGGTTCTCCTGTCTACTTCTCATTATAAGTTGGagttaaaa
tattttatgataaaaattgaattttctaGATTTAGTAATTATTTACATGT
AGGAACtttaaaattactttaaaattgatttttattttcagaatatACAT
CTTTGTTTAATTGATTACATAAAAATTTTGGAACAATTGAGTAATTGTTG
CGTTTTGGGCGTTTCATCTTCTTTATTTTGCCTCTTCATTTCGTTGCGAT
TTTTAATGGCTCCTCAAGATTTGAGTCTGAAAATGACCGTTTCCTTTTTC
GGTTCGATGATGTTGTTGAATTTAAAAAGTGGGTCATAAAAGAACGTTCC
CCTTAGACATCGAGAATTTACCTCCCCAACTTGGTTTATCTTGACGATTT
TAACTACACATTTTATCTGCGTTTCTTTTTAGGTGAttaaaaaaatctag
aaaaaaagttcatttGATAATTGATATGGATCGGTATATTGTGCAAGCTG
TTTGCTTGGTTTTATTTGTTTGCCAAGGTTTGTATTTATTACTTCAGCAA
ATTTCATTCGCCTCAAAGAAGAGTGCTTACGAGAATCCGGTATTGAACGG
TATTCGAATTAGAAATTATCGACATTCCGGTGTTGAAAGGACTAAAGGTA
TTCGGGTACTCGCCAGTACGTCGGTATGGCGAAACTTCATGAAAAGGTTA
CcagtattttgatattttgtatcTTCGGAGGCCTCCACCAAACATTCCTC
CTGAAACTGACCGGTCTTTTAAACATCAGTTTATCTTGAAGATAtggcaa
aagtttttttgaaatgatcCTGTCAGATGTTGTTCTGTCTGTCTGTTTGT
CTGTATATCACAAGAAAGTTAGAGTGGCATGGAGACCTCAAAAATGGTCg
gttttggcattttttcatttttttgatttttggggtctgggcACTAAACT
TTTGGTATGTTTTACTACAATCGGGCTTATAAATAGTTTGAAGCTacctg
aagttgagcccagtgcgttgcgcacgttcaacTATTTTGGAAACATCTTT
CGGAATTTGGCGGAGTGTTGAACCCTCTCAGAGATGTTCTTAAACCCCTG
TTGTATATATACAGAGCCATTTCTCTATAAGTCACCTCTATGGTCAATGG
TTTGTAAATAAGAGAATTGTCTTTTTCAGGTGTTCACACTTTGGACTGTT
ACAAATGCATTGGCCAGCAATGCCCAACTGATCTCTCAGCTGCACCAAAC
GAAACTTGCACTGGAGATCAAATATGCATCAATCAAGTCAATTACAGAAA
TAATACAGTCACGTTGGTAATAAGGCAATGTACTGATCGGGTAGAGTGCA
CTAACAAATGTACCGATCCTGACCCTGATTTAAATGTGGATTGCCCCTTT
TGTTGTGAGACTGATCTTTGCAACATAAACTCACCATCTCCAGTTCAACC
GACCGGCTCACCCACCACACCAGGCGGTGGGTCGACAACCACTGTCGCGT
TAGCCGTTTTGATCCCCGCCATGGTTTTCGGGCAATTCCTTCAAAAATGC
GCAAATTAATTTGAAGATGCATAAAAACGGTGATGTGATGATTACGTTTT
TTAACTGCACAACAAAGCAAAATCATGTTCAGTTTGGTATGATTAAACAT
TCTTGATCTAATTTTacataaattttatattttaatacTATTTCAATTGT
CATTTGGTAGATATCTGAACCACAAGGGTAGTAGGGTATGATCGGAACGG
ATCTCTGaatccaaaactttttgaaaaactaaatttaaGTTAGAGAACGA
TTGGTTTTAGTGCCTTAAGAGACcctataataataaaataaaaggaTTTC
TCATGTAGAAGTCTTATGCGGATACAAGAATGATTTCGGATAGCATAGCG
ACATTAGTTGTTTTATGTAAGGTTAATATTTTTacctacacttttttttt
ataattttacttaatcataaaaatattttaatcagGTGCTCGGTGAGATT
AGTCATTTATACTGGAATTCTTTGTATATTTTACCGAAGGGGGTACTTAA
TGTGTTCCCAACAAAAATAGACCATCAACATTAAATTAAGTTTTTGTGgt
caatattattttttgagaaaataaaaaaccccgaaataaaaaaaggatta
atttttgctcaaattttatcaaaacttttctggTTTGTGTGTAAGGATGC
GATTTTCAAAGTTTAACTTCTGTTTTCAGTCGAACGTACTGGTTATTTTC
TGGCCGATCCCCCCCCGGTAAATACTGTTACTAGTTTATACTGATTTGTA
TTTAATATTTTCTTCTAAGAATAAACTTATCTTtttgattctaaaaactt
tattaCTTCATTAGTCAAGACAGTCAATTATCattaatcaaaaaaaaaaa
tcatagctTGCAA Coding sequence (CDS) from alignment at scaffold_58:154776..157488+ >TCONS_00070776 ID=TCONS_00070776|Name=TCONS_00070776|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_58:154776..157488+ (Clytia hemisphaerica)
ATGGATCGGTATATTGTGCAAGCTGTTTGCTTGGTTTTATTTGTTTGCCA
AGGTGTTCACACTTTGGACTGTTACAAATGCATTGGCCAGCAATGCCCAA
CTGATCTCTCAGCTGCACCAAACGAAACTTGCACTGGAGATCAAATATGC
ATCAATCAAGTCAATTACAGAAATAATACAGTCACGTTGGTAATAAGGCA
ATGTACTGATCGGGTAGAGTGCACTAACAAATGTACCGATCCTGACCCTG
ATTTAAATGTGGATTGCCCCTTTTGTTGTGAGACTGATCTTTGCAACATA
AACTCACCATCTCCAGTTCAACCGACCGGCTCACCCACCACACCAGGCGG
TGGGTCGACAACCACTGTCGCGTTAGCCGTTTTGATCCCCGCCATGGTTT
TCGGGCAATTCCTTCAAAAATGCGCAAATTAAATGGATCGGTATATTGTG
CAAGCTGTTTGCTTGGTTTTATTTGTTTGCCAAGGTGTTCACACTTTGGA
CTGTTACAAATGCATTGGCCAGCAATGCCCAACTGATCTCTCAGCTGCAC
CAAACGAAACTTGCACTGGAGATCAAATATGCATCAATCAAGTCAATTAC
AGAAATAATACAGTCACGTTGGTAATAAGGCAATGTACTGATCGGGTAGA
GTGCACTAACAAATGTACCGATCCTGACCCTGATTTAAATGTGGATTGCC
CCTTTTGTTGTGAGACTGATCTTTGCAACATAAACTCACCATCTCCAGTT
CAACCGACCGGCTCACCCACCACACCAGGCGGTGGGTCGACAACCACTGT
CGCGTTAGCCGTTTTGATCCCCGCCATGGTTTTCGGGCAATTCCTTCAAA
AATGCGCAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00070776-exon-scaffold_58-1491911889:154776..155602 | TCONS_00070776-exon-scaffold_58-1491911889:154776..155602 | Clytia hemisphaerica | exon |
| TCONS_00070776-exon-scaffold_58-1510915933:154776..155602 | TCONS_00070776-exon-scaffold_58-1510915933:154776..155602 | Clytia hemisphaerica | exon |
| TCONS_00070776-exon-scaffold_58-1575043694:154776..155602 | TCONS_00070776-exon-scaffold_58-1575043694:154776..155602 | Clytia hemisphaerica | exon |
| TCONS_00070776-exon-scaffold_58-1491911889:156255..157488 | TCONS_00070776-exon-scaffold_58-1491911889:156255..157488 | Clytia hemisphaerica | exon |
| TCONS_00070776-exon-scaffold_58-1510915933:156255..157488 | TCONS_00070776-exon-scaffold_58-1510915933:156255..157488 | Clytia hemisphaerica | exon |
| TCONS_00070776-exon-scaffold_58-1575043694:156255..157488 | TCONS_00070776-exon-scaffold_58-1575043694:156255..157488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_58 | supercontig | scaffold_58:154776..157488 + |
Blast
The following BLAST results are available for this feature:
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