TCONS_00070769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070769
Unique NameTCONS_00070769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070769 ID=TCONS_00070769|Name=TCONS_00070769|organism=Clytia hemisphaerica|type=transcript|length=191bp
CACCGTTACAGGAAAATTGATTGGAATTTTCTTGTGGATATTGAACAACA
TGAGAACAAAAACTACGAGAAGGATAAACCATGGAATAAGTGTTGTAGCC
AAATAAAATCCACTTCCTccttcaaaatcattttccacAGTCCAATGTAC
TTCTCCTCTCCAGCCTGCCATTATGCACCAtgacaaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_58:120306..124937+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070769 ID=TCONS_00070769|Name=TCONS_00070769|organism=Clytia hemisphaerica|type=transcript|length=4632bp|location=Sequence derived from alignment at scaffold_58:120306..124937+ (Clytia hemisphaerica)
CACCGTTACAGGAAAATTGATTGGAATTTTCTTGTGGATATTGAACAACA TGAGAACAAAAACAACGAGAAGGATAAACCATGGAATAAGTGTTGTGGCC AAATAAAATCCACTTCCTCCTTCAAAGTGAATTTCCACAGTCCAATGTAC TTCCCCTCTCCAGCCTGCCATTATGCACCATGACAAAAATAACAGAACCT GagaaatcaaatttgaaaatcttcaaCAGAATTCAAACTTCTAAGTGTAC TGCTGTGTGAACTGGAAATTATGGTCACTCTCTATAAGAATTTCAATGAG GACACCAGCTTTCCCTGGGGGGAGGTGGGTACTTAGATGGTGCCGCATAT GTGCGAGCAATtagacacccctttctcacagacctggtgggACCCCCTCA CTGCAAACTATGGAAATCAAACTCCCAGCGGAAATTCCCAAaattcctac cgggtctgtgaaaagggtcctttttacaccctcgaaagtccccCACAGCG GTACAAAGCCATATAGAAATAAGCTCTGCATCGTTGATATTTCCAAGGAG AATAATCACCTTGATGATTTTAAACCTGCGTTCAGATCTTTTGTATCTCT CTTGATTTTTAGTCTGCCTTTTTTTGctattgttgtcattttttccCATc ttcttattacatcaatcttcaggtaggtccattcagcctGTAGCTTGTTC GtcacatttttcttttccattttccaagtcttttatcctttagattaTTC TCCTTAGAAATATCTTATAACACCCGGCTTTGGAACATAGAAGTGAtaga aaatttctatcgaaatcccaatggggaaaTTCTATagttttaaagctaaa aaagtccaatggggatggttttggagtgcaaatttttacattgaatttcg aatagagataaaatcaaagtcaatcccAACTGGGATgcgattttggcaaa attttctaGTGTCcagcaggtctgtgacacaggggtgtctcatAGTAGCG TCAATGCGCActgagaaatttttaaaataggtAAGTGTCCAGATACTGTA TAGGCTTTAGGACCTTGAGAGCAAATGaacatttgattaaaaaaatatat gaagTCAAGATTTTTATAGTCATTTTTTGAAGTCAAATCCTCATAGCCCT TTCGatcattcaaaatattttctgttaGAATCGTCAAAATTGAGactaat gttcttatataaaaaagacttaCAAGATTGATGACGAGTAACAAACCAGG AGGTGTTCTTATGAAGCCAGGGTTCAATCTGATACCTTCATCACTTGATC CTTGTGTCGGTTGAGGGTCAACATCGTAGGGTGGCGGTGCTTCGGCCATT TTCACTATTGGTGTAGGTTATCTCGGgttgtatttttgtaaatttactTC TAAATATATTGTTAAAGTAATTTTTCGTCTTTTGTACATTAAAGAGGCAT GAGTCTAAATTGCTATAGAGTGGACATCCAATGCTTGCATCCATGAAGGT TAAGGGGTCTAATTTAAAATCGAACCTGTGACGTGGGTTTTATGAGATTG GAAGTCACAGACCTATCCTGAATATCCAAGCAGTAAACCTTTGAGTTAAA AACTGGGTGCAAATTGATAGGCTGTTGACAAATTCTCATAGTCAAAATCT TATACCtcgtctttttttctaaaaggttCATGAAAACACCCCAGTCTCAC AACCCCAGTGGAACattttttctcagtggggataaaaggttctaaggtta aaaaattctgtggcaatggttttgaagtgcaatttttgaacattgaattt cgaatggggatgaaattctaagttattttcccaccgggaacgaaattttt gtcaatctttccaGTAGTTCTGGGCTCCCGGCGGGTCTGTGACATAGGGG TATATGACTGGGGACTGTACAGTGCCATGTTCATCAGTCAAATTAAAAAG TGTTGCAATTTCTCTGCAGGTTGGGCTACAATAGAAGATTGTGCATCACT ACAGGTGAATATTGTAAAATTTTGGCGTTATAGGAAGTTTTAAAGATATG TCAGCcatattaattttcaaaatgaattaATATAGAACATCCAGTCCTTG GTTTGAAAAGTTCCCTCTATCCTTCACCTTTACCTATAATGCCATAGatt cattttcaataataacaCAATACTTCTCATACATAGCTCCACTCAAACTT GCTTGATCAACTCAATCGCATTTCAAGTAAGAAAAATATCATCCCACTTT TTAATGCCAGAAGTATGTACAGCAATTAGCAAAGGTAATTAACTTAAATC TTGTCAACAGATCTAATTAAACAAAACAATGTAAGAACATATAGTTTAAT GGTATCTTTTAACGAcatctttttttctaagaaacctTAAATTGAAAATG CCATTTCAAGCACTTTTATAAACGTCAAAAATTACCCTTCCCAATTCTCC GGTTTGAGGGGACCAACTTAGAAAACACTCAGAAATAGTAGCCCAATTTC AAATGTGATGTCGATGAAGTTAAGTAAATGTAACGCTAAGGGTAAATCTG GTTATAAATTCGTGCTGGCACATAATGTTTGCgaaaaaaaagtgtgaaaa ttttttcattttttaagtgACTAAATACTACTTTATCTGGGACAAGGGTG TTCAAAATATTACAGCTTTCATCCCGTCCTGCGCTGGtactgaaaattta agaattggGCCCTTGAAAAATAGCTGGCAATTAAAGAGATAAATTTTTCG TCAATACGAAAGATTAGCCTTGTCTTGCATGTTTACAATTTCCCTAACAA TAATTTGTTAAATATACAATATTAATTGATTGAAGTGAATTTTCGAACGA ACACAACGACTGCataaatacaacaaaaagaTTTCCTAAATAAAATGTGC CCTAAATTTACAAAATCTACGACTAATGTGTCCATTTGAATCATTTCTAA AGATTTTTGTGTTACTGATTACAAAATGTCTTTAAATTTCAAACACcatc ttctttttatttcttctCATTCAAATTTTGTTCTCAAAAAAAATATGAAC TCATAGTATTGTCATAAAATCTGGTGATTGATTTTTAGTGTTGGATTTTC ATGCTCAAGGACTTCTCCATTCTCGGAAGTGTAAAAATGCTTGAACTCCT AATCCAACCACCGAGAAAATTCCAAAAGCCTGTAAAAGAAAAAGTTATTC ATAATTTAACATGTTTGCTCAAAAAGCccaaccatagatttataatgccc gaaggactagatggcgtacttttgctgaaagtgtcccgtggttaggtagg aaattctACCTAAGTcgcgtgacattacaatagaatttcagcgcttgacc aataagaagctttcgtgggttttcgaaaacaatagcaacaatatttttgc cgatattaacttttttttgcctgcgatggcttaaagcctgACAATTAGCC CTTTGagttttataaatctatgagcCCAACCAGCCTGTTTCAGGGATATT TTGATATTGTGGTCTAAACATCATAAACCtgagaaaatttcagaaatatt taaaatagaATTTGTATTGTTAGATAggtcagccccggtgaaaaAGAGAA ATGTCACTATTTCATTGCGTTCTACCTAGAATTGCATTGGGAAAGACAAT ATAACTTTCTACTATACTTTGAGCTAAACAATTGAAAAATCCCCACATAA AAGATAGTTAGAAAATGGACAGCTAAGATCCCTTAGAGTCTAAAATAGAT GGATGCCCCCGGGGGGGGAGGGGATTACTAGGGTTGTGACTTctaaaaaa ggcacccttaggCGACACATATCGTACCCTACATTTGCTTACTGTAAGTA CCCCACCCCCTGGGAATTGATTTAGTGGAtgtaatgaaatttaaaatcca GTTCAGACTTACACAAGCAGCTCCGAGATGATTACAAGCATAAACTTCAC ACAAGGAACTATGACCATTCCATTTATCAGCTTTCGCTCCAACAATACAC GAAGCAATAAACAGTAATACTGCCCATATAACGCAGTTAAGCATTAGCTA AAGAAAGGAGGAAAATAAAAGGATTCGAAAAATCATAGCATTAGAGTCTC TAGAGATTGTTTGTGTAAAAAAACCGCGAGTCTTTAAAATTCTAGAAAGG TTGGAAGGgttgagttttaactctgagatTTAACAATCCAacgatctgag gatccaaaagttcaaagatggtccaataaggctcagattataacctggaa gtctataaactcCTTCCAAATGGAAATATTTGATTGTATTTAACAGATAG CCCAAAAGCAACTTTCTCGCACGaacttaaaatttcgaaaaacgaggaaa taggCAAAATTCTCGATGTTGATTGTAGCCGGATGCCTCTACGCTTTCTC TCTCTGTCTCTTTGTCTGCTAAGCAAAAATGAACTGAACCTCACCGTTAT GGGAAAATTGATTGGAATTTTCGTGTGGATATTGAACAACATGAGAACAA AAACTACGAGAAGGATAAACCATGGAATAAGTGTTGTAGCCAAATAAAAT CCACTTCCTccttcaaaatcattttccacAGTCCAATGTACTTCTCCTCT CCAGCCTGCCATTATGCACCAtgacaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044040XLOC_044040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070769-exon-scaffold_58-1491911889:120306..120354TCONS_00070769-exon-scaffold_58-1491911889:120306..120354Clytia hemisphaericaexon
TCONS_00070769-exon-scaffold_58-1510915933:120306..120354TCONS_00070769-exon-scaffold_58-1510915933:120306..120354Clytia hemisphaericaexon
TCONS_00070769-exon-scaffold_58-1575043694:120306..120354TCONS_00070769-exon-scaffold_58-1575043694:120306..120354Clytia hemisphaericaexon
TCONS_00070769-exon-scaffold_58-1491911889:124796..124937TCONS_00070769-exon-scaffold_58-1491911889:124796..124937Clytia hemisphaericaexon
TCONS_00070769-exon-scaffold_58-1510915933:124796..124937TCONS_00070769-exon-scaffold_58-1510915933:124796..124937Clytia hemisphaericaexon
TCONS_00070769-exon-scaffold_58-1575043694:124796..124937TCONS_00070769-exon-scaffold_58-1575043694:124796..124937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:120306..124937 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.18205 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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