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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070481 ID=TCONS_00070481|Name=TCONS_00070481|organism=Clytia hemisphaerica|type=transcript|length=2749bp
ctgcgattcaaacTAGAGATGATCCAGATTTTTGTCAGTGAGCACCATGC
ATCACTTCAACAACACAACGATGGCGTTCCCTGTATGGTCCGATGAATTG
GATTCGCTTTCCATCAGTGTGGCGGCAACCAACATCTTTGCTGGTTGTTT
CAGTCTCATCGGAAACACCCTGGTCATTGCGGTCATGTTGAAAAGATTCC
GGACAGCATCCACCTTCAAGAAACTATTGGCGCATTTAGCATTTTGTGAC
ATCATCTATGGGATTTCTATATTACTGGATACACCTAACTGGCTTAAGAA
GCATTGGGTGTATACGCCCATGTTCTGTAAAGTACTCCCTACCACCCAAT
TCGCTTCCAGTTTGGCAGCAGAAGGAACAGTTGTTGTTATAGCAATAGAA
AGATATCGTGGAATCACACAACCATTGAAAGTACATTGGAACAATcgaga
tttttcattttccttgatcATAGCTTGGCTCTTTGCTTTCGTCTCTGCTT
CACCTTATTTCAACGTCTTAAACACAGTAACCATACCATATATGGGCAAC
CATACTTTCTGCATCGAAACTTGGAGCACAGGAGATCATATCGATCAAGA
GAATTCCGCTTTCATTTACTCTACCTATACATTTGTGGGCACCTTCATGT
TACCGATGGTCATTTTAGCGGTATTGTACGGACGAATTATTTACATTATT
CGCAAACCGATTGATCCTATCCCATGCTTTGAACAACTTTTCATAAAACG
ACGCGAAAAAGACATCAGAATCACCAAACTTCTGATTCTAGTCATTGTGG
CGTTCGCCATTTGCGTTTTACCCAACCAAATTGGACACTTTATAATGTCG
AAGGCAACgctttcaaaatctgaaaaagaaattcttgcTTATGTTCTATT
GATTCCATACCCTTTCCAATGTGTTTTGAATCCTCTCATATATTCCATCG
TAGacaagaaatttagaaaagACGCAAAACAAATCTTATCGTGTCAAGGG
GATAAAGAGCGAAAGATTTCTCGAACAATGACCTCTTATTTTATGGTTGA
AAGTGCATCTCACAAGAAGACATCGCATAGTGGAGAGACATCTATTTGTT
CGATGCCTTTGAGGACATCTCGTGAAGAAAGTGAAAGCTTATTCTGACGA
GCAAAGATCGTCGTCAAGAATACCTTGATCAAATCGTCACCGCATAATCA
GAATAAATAGACTGACCTCGGGTCACACACTGTAGAATCAATACaaccct
gtctcgcagcccagTGGAACTTATTCCTGCAGcggaaatgaaattttctt
tcgaaatcCCAATTTTTCCAAGCTCAAGAGATCCCATGGGGATGATTTAG
AGTGAAAAtgtttccattgaatttcaaatcaaattaaaGTCGATTACCCA
GTGAactgtagggtatttttcccaccggggataAGATTTTGATCAGATTT
TCAAATGGAGCAGGGTCCCACTGGGTCTGCGATACAGGGTTGTATCAATA
GTTGTTGTcataatttctttcaaaatttccagtGTAATGTtatacaaaag
aaagaaaatttatgaGTAGCAATTTCTGTTGTCTTCATTTGTCTttcctt
tcacaaaaaaattcttcGTCCGAAGAAAAAACTAATAGGATGAATATTGA
AAGGTTTTGCTATTTACATGTTCCataaaaaaggaaagattttttataat
aCTATTTGCGAGCTTGTATGCTCTTGCCGAGTCCTACATTATTTAGGAGA
CTCTTACGAATACCTGAAAATTatggtaaaatcgaaaaatcacaAAACTC
GAGAACAGAGAATTGAAAATCTTATCAGGAACCAAAATACTCAGGCATAC
TCTTACATCTTACTTTCGTGtaaaagtcaacaaaatttcgaatttcgaaC
TAAAAAAAGGGGTTTGATCTTagtataaaacaaaaaaaatatatgcaTCA
AATATCTATCTAATAAGAANGATCTTagtataaaacaaaaaaatatatgc
aTCAAATATCTATCTAATAAGAAAACGCGTTATATACAAGCAGCCTTGGC
CGAACACGCCTTGATAATAAAGCTCTGTAAAGACAAGGGGATTTCGAGAA
ACTACTGTCCattcaattaaaaattgaattcgATTCAAATCCATCATTCA
AAAAAGTAAtcgaacaaaaatcaaaacaatttttttatatacataGTTGC
GTAGCAACAAAACCACAGAAACAAGGCTGTTTATTTTTAGCCATCATAAC
TTATTTTAGTACCATTGTGAAAACAGAAATAAGATATTATATCATTTGTT
GTagtgataaaaaaatatctatCAAATAACACATCATCTATCATTCGAAA
TCTTCTACAACGACTCGCGCATGCGTatgagggggggggggactttatac
atattttatttacaaaaagggAGGTTTGGGGAGAAAAAACTTCACGGAAC
GCCACCATCTtcatcaaaaacttcaaacaaacaCAACTTTGTAACATTCT
CAAATAACAAGAGTTTATTGAACACGTATATTTCCAATGCATCAAATCAC
ACCTTATTGCTTAGCAGCTCCACGCATGTCAAACGTTTCAATATGTTGTT
TGGTCTTGTACCGATTGATCCACTCGTCGATCATTTGGTTGACGAGGTGA
GGTCTTGGTGTGATCACTTGCTTGGCTGCAAGGATTCCACCATCCGTTAT
GCAACAATCGAAATATTTCTGTAGTAACTTTTCTTCTTGGCCAACCTAG Run BLAST on NCBI transcript from alignment at scaffold_56:744504..747499+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070481 ID=TCONS_00070481|Name=TCONS_00070481|organism=Clytia hemisphaerica|type=transcript|length=2996bp|location=Sequence derived from alignment at scaffold_56:744504..747499+ (Clytia hemisphaerica)
ctgcgattcaaacTAGAGATGATCCAGATTTTTGTCAGGTAATAGTCGAG
TTGTACTATGTGGCTCCACGTGCctattttgtgactttttctctcttctt
gcGTTGAAAATTCACATAAGAATCATACCTTTAAAGAATTAATTTTTGTA
AGGTCATGTCAAAATCGGGCAAATAtagtaaaaatttgatattttgcttG
ATTTTTACCAAAATCCCTCATTTGTTGCCTcgtagattgtcaacaaagac
ATCTCCAAGCTAATAATATTTCATTGCATTTTCAGTGAGCACCATGCATC
ACTTCAACAACACAACGATGGCGTTCCCTGTATGGTCCGATGAATTGGAT
TCGCTTTCCATCAGTGTGGCGGCAACCAACATCTTTGCTGGTTGTTTCAG
TCTCATCGGAAACACCCTGGTCATTGCGGTCATGTTGAAAAGATTCCGGA
CAGCATCCACCTTCAAGAAACTATTGGCGCATTTAGCATTTTGTGACATC
ATCTATGGGATTTCTATATTACTGGATACACCTAACTGGCTTAAGAAGCA
TTGGGTGTATACGCCCATGTTCTGTAAAGTACTCCCTACCACCCAATTCG
CTTCCAGTTTGGCAGCAGAAGGAACAGTTGTTGTTATAGCAATAGAAAGA
TATCGTGGAATCACACAACCATTGAAAGTACATTGGAACAATcgagattt
ttcattttccttgatcATAGCTTGGCTCTTTGCTTTCGTCTCTGCTTCAC
CTTATTTCAACGTCTTAAACACAGTAACCATACCATATATGGGCAACCAT
ACTTTCTGCATCGAAACTTGGAGCACAGGAGATCATATCGATCAAGAGAA
TTCCGCTTTCATTTACTCTACCTATACATTTGTGGGCACCTTCATGTTAC
CGATGGTCATTTTAGCGGTATTGTACGGACGAATTATTTACATTATTCGC
AAACCGATTGATCCTATCCCATGCTTTGAACAACTTTTCATAAAACGACG
CGAAAAAGACATCAGAATCACCAAACTTCTGATTCTAGTCATTGTGGCGT
TCGCCATTTGCGTTTTACCCAACCAAATTGGACACTTTATAATGTCGAAG
GCAACgctttcaaaatctgaaaaagaaattcttgcTTATGTTCTATTGAT
TCCATACCCTTTCCAATGTGTTTTGAATCCTCTCATATATTCCATCGTAG
acaagaaatttagaaaagACGCAAAACAAATCTTATCGTGTCAAGGGGAT
AAAGAGCGAAAGATTTCTCGAACAATGACCTCTTATTTTATGGTTGAAAG
TGCATCTCACAAGAAGACATCGCATAGTGGAGAGACATCTATTTGTTCGA
TGCCTTTGAGGACATCTCGTGAAGAAAGTGAAAGCTTATTCTGACGAGCA
AAGATCGTCGTCAAGAATACCTTGATCAAATCGTCACCGCATAATCAGAA
TAAATAGACTGACCTCGGGTCACACACTGTAGAATCAATACaaccctgtc
tcgcagcccagTGGAACTTATTCCTGCAGcggaaatgaaattttctttcg
aaatcCCAATTTTTCCAAGCTCAAGAGATCCCATGGGGATGATTTAGAGT
GAAAAtgtttccattgaatttcaaatcaaattaaaGTCGATTACCCAGTG
AactgtagggtatttttcccaccggggataAGATTTTGATCAGATTTTCA
AATGGAGCAGGGTCCCACTGGGTCTGCGATACAGGGTTGTATCAATAGTT
GTTGTcataatttctttcaaaatttccagtGTAATGTtatacaaaagaaa
gaaaatttatgaGTAGCAATTTCTGTTGTCTTCATTTGTCTttcctttca
caaaaaaattcttcGTCCGAAGAAAAAACTAATAGGATGAATATTGAAAG
GTTTTGCTATTTACATGTTCCataaaaaaggaaagattttttataataCT
ATTTGCGAGCTTGTATGCTCTTGCCGAGTCCTACATTATTTAGGAGACTC
TTACGAATACCTGAAAATTatggtaaaatcgaaaaatcacaAAACTCGAG
AACAGAGAATTGAAAATCTTATCAGGAACCAAAATACTCAGGCATACTCT
TACATCTTACTTTCGTGtaaaagtcaacaaaatttcgaatttcgaaCTAA
AAAAAGGGGTTTGATCTTagtataaaacaaaaaaaatatatgcaTCAAAT
ATCTATCTAATAAGAANGATCTTagtataaaacaaaaaaatatatgcaTC
AAATATCTATCTAATAAGAAAACGCGTTATATACAAGCAGCCTTGGCCGA
ACACGCCTTGATAATAAAGCTCTGTAAAGACAAGGGGATTTCGAGAAACT
ACTGTCCattcaattaaaaattgaattcgATTCAAATCCATCATTCAAAA
AAGTAAtcgaacaaaaatcaaaacaatttttttatatacataGTTGCGTA
GCAACAAAACCACAGAAACAAGGCTGTTTATTTTTAGCCATCATAACTTA
TTTTAGTACCATTGTGAAAACAGAAATAAGATATTATATCATTTGTTGTa
gtgataaaaaaatatctatCAAATAACACATCATCTATCATTCGAAATCT
TCTACAACGACTCGCGCATGCGTatgagggggggggggactttatacata
ttttatttacaaaaagggAGGTTTGGGGAGAAAAAACTTCACGGAACGCC
ACCATCTtcatcaaaaacttcaaacaaacaCAACTTTGTAACATTCTCAA
ATAACAAGAGTTTATTGAACACGTATATTTCCAATGCATCAAATCACACC
TTATTGCTTAGCAGCTCCACGCATGTCAAACGTTTCAATATGTTGTTTGG
TCTTGTACCGATTGATCCACTCGTCGATCATTTGGTTGACGAGGTGAGGT
CTTGGTGTGATCACTTGCTTGGCTGCAAGGATTCCACCATCCGTTATGCA
ACAATCGAAATATTTCTGTAGTAACTTTTCTTCTTGGCCAACCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070481-exon-scaffold_56-1491911889:744504..744541 | TCONS_00070481-exon-scaffold_56-1491911889:744504..744541 | Clytia hemisphaerica | exon |
| TCONS_00070481-exon-scaffold_56-1510915933:744504..744541 | TCONS_00070481-exon-scaffold_56-1510915933:744504..744541 | Clytia hemisphaerica | exon |
| TCONS_00070481-exon-scaffold_56-1575043694:744504..744541 | TCONS_00070481-exon-scaffold_56-1575043694:744504..744541 | Clytia hemisphaerica | exon |
| TCONS_00070481-exon-scaffold_56-1491911889:744789..747499 | TCONS_00070481-exon-scaffold_56-1491911889:744789..747499 | Clytia hemisphaerica | exon |
| TCONS_00070481-exon-scaffold_56-1510915933:744789..747499 | TCONS_00070481-exon-scaffold_56-1510915933:744789..747499 | Clytia hemisphaerica | exon |
| TCONS_00070481-exon-scaffold_56-1575043694:744789..747499 | TCONS_00070481-exon-scaffold_56-1575043694:744789..747499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:744504..747499 + |
Blast
BLAST of TCONS_00070481 vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 3.254e-19 Identity = 79/329 (24.01%), Postives = 146/329 (44.38%), Query Frame = 2
Query: 83 VWSDELDSLS-ISVAATNIFAGCFSLIGNTLVIAVMLKRFRTASTFKKLLAHLAFCDI-IYGISILLDTPNWLKKHWVYTPMFCKVLPTTQFASSLAAEGTVVVIAIERYRGITQPLKVHW---NNRDFSFSLIIAWLFAFVSASPYFNVLN---TVTIPYMGNHTFCIETWSTGDHIDQENSAFIYSTYTFVGTFMLPMVILAVLYGRXXXXXXXXXXXXXCFEQLFIKRR-------------------EKDIRITKLLILVIVAFAICVLPNQIGHFIMSKATLSKSE-----KEILAYVLLIPYPFQCVLNPLIYSIVDKKFRKD 973
V++ EL + +++ T + +L GN LV V+ + + + LA D+ I I + + +W+ CK++P Q + + T+ IA+ER++G+ P K+ W N R F+ L + WL A + SP ++V Y H C+E W++ H IY+T+ V F+LP++++ +LY +I Y +L+IK+R K R +++ V+ FA+C P + H ++ + K K I A V +I + + NP++Y+ +++ F+K+
Sbjct: 35 VYTPELPGRAKLALVLTGVLIFALALFGNALVFYVVTRSKAMRTVTNIFICSLALSDLLITFFCIPVTMLQNISDNWLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTNRRAFTM-LGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQK------IYTTFILVILFLLPLMVMLILYSKIGY-------------ELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIFAIVQIIGFS-NSICNPIVYAFMNENFKKN 342
The following BLAST results are available for this feature:
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