TCONS_00070400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070400
Unique NameTCONS_00070400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070400 ID=TCONS_00070400|Name=TCONS_00070400|organism=Clytia hemisphaerica|type=transcript|length=2175bp
ttttttgataaaccacaagtaatttacagaccaaaaaGATCGGACCCTCG
ACGGATGCCAACCTGTACAAAGCGGCGCAGGGGAAGCCCATACTTAAGAC
GCAAGTCGgcatttaaaaaaagcaataacCAATTAGAAGCGAGGGAGTTC
ATAACAGAAAATGGGGCAAGGCACATCTTCAGAGACAGATGCTAAATTGA
AAGCATTAGTATCCAAGCTTAGCAAGCTGGAGATTAAAGATATTGAAGCA
GTTTTCATGGAGTTATCTACTACTACTGATGAAGGACAGTTTGTTATCCA
ACAACCCTCATGGCTCAATCGTGATAAATTTGCTGAAATATTTGGTTTAA
ATGATCTGATTGTGGAACAGTTATTTCAAACATTCGACCGTGACAAGAAT
GGTATTATTGATCTGCAAGAATTTGTTACTGGTATGGCATTGTGTTTGCA
TGGTGGTATCAAAGAAAAATGTCACTTAttattcaagattttcaatttgA
ATGGGGATGAAGGGATTAGCCGTGAAGAGTTATCGACAGTTTTAACCAGT
TGTTTGATGTCAGCCAATACCTTGCTTCAAAGCACATTGAAAACCGAAGG
GCTGTCAGCATTTGAGAGTCAGCTAGCTGATCAAACTGGTGCAGCTGTTA
TGCTTAATGTTGTGGTCGATAAAATTGTGAAGGAAGCATTTGACACTTGT
GATGTTTCTAACACTGGAAAGCTGGAAATTGATGAGTTTGCCAAATGGGT
TCATAAAAATCCCAAATTGATGAACAATATTTTTGTATTGCAATGTCCTA
AGCCAACACCATCACCCATTAAAAgctcAGAAAGTAGTTTTTCTGTTTTA
ACAATGGCTGGCCAGGATGAAAACATCCCTGAGGAAAACTCCAAAACGAA
GATTGAGATGGCTAGATCAgTTTCTCAAATAACAGAAGAGTCGACAAAAT
CATTACTAGAACTTAGCCAAGAAACCAACACACCGACAACTGCTGGTGAT
CTATTCAAAGAAACAAGCCAACCTTCTGCTGACGGTGCAGATTTTTTCGA
CACACTTGGTTCACATAATGAAACACCTTCTCAAGCACCAGCCGGTCAGT
TACCACGTCCAGCTAGTGAATTATTCCTATCCTCAGGAAATGAAAACTCA
AATATAGATGGTTTGCAGCACAGTACAAGCCATAATGATCTCGCTTCCTT
GAAACAACAGCCCGCTATCAGCCATTTACAAAACGCAGAGAGTATGCAAT
CAATAGCTTTATCCAGAGACTCACTTGCACCGGATTCGCACAATGCATCA
CAAGAGTTAGGAACCTCAACAGAAAATATCACCTCATTAGTTCCTCAACA
TCATACTGAGCCAACAATACAACTTCACCAAGAAAACCAGCAACAAACAC
TGCCCCAAGTTGATCCATCCTcatatcaacaacaacaacaaagccCCACC
CAAGCACAACAACAACCACCCATCCAACCGCCCCAGACCACCATGCAAAC
ACAATACCAACAGCAACAAAAAACAGACCATTCACAAAGCTTTGATAACC
CTGCGCTAGCATTGGAGACAGAAGTCAACAATGAAGTGTTTCCAGAACAA
CCAGCCGTTATTCAAAACACTATTTTGGACAATAGCCAAGTATATAACGA
CAAATTAGTGGACCCGGCACAAGAACAACGGCGTCGTGGATGTTCTTTTT
GGCAACCGAGCACTAACACTGAACGTCTTCTGCAACAATACAAACAAGGT
GCTATCCCTGAGATGAATGTTCTTACGTCTCCATCCGTCTTGGTTGAGAA
TCTCATGGGTGATCCAGTGAAAGACTTGGTACGAAAATATTTGGGTGAGC
AAGAAGCCAACAAGAGACCAACACTGATGGCCAATCAAGTGGAGATGAAT
GAAAATGGATTGAGAAGATTATTGGCTGCAGGATGTTGGAGAGCGGCAGT
GGACTTTACCACTAAATATCTGACAGCGCACGGCCAAGGGCTTGTCTCCA
TGGGACAAAACCAAAGATCCAATTTGAGCCCTTCCATTTTACAGATTTGG
TTCGTACGAATCGCTCTACTGGTCAAGTTGAGAATGTTCAGTAGTGCAGA
AGCAGAGTTGAGCGCCTTCAAAGAATTTGACGCCCCAGATCTTTATTATC
AATATTACCCTGAATTATATCAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_55:152096..161794-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070400 ID=TCONS_00070400|Name=TCONS_00070400|organism=Clytia hemisphaerica|type=transcript|length=9699bp|location=Sequence derived from alignment at scaffold_55:152096..161794- (Clytia hemisphaerica)
TTTTTTGATAAACCACAAGTAATTTACAGACCAAAAAGATCGGACCCTCG
ACGGATGCCAACCTGTACAAAGCGGCGCAGGGGAAGCCCATACTTAAGAC
GCAAGTCGGCATTTAAAAAAAGCAATAACCAATTAGAAGCGAGGTTAGTA
ATGTTCACGACTACTCCTTCTAAGAGCTGACAGTCCAAATTTCAAACTTA
TTTTTCATATTCAAAACCTATGCCATTTTAAAGCCCTTATCATCAGAGAA
AAAATGAGGGGTCATTTACCTGGCAAAAAGTTTTAGTTCTTGAGATACTG
TTTATCAATTTGAAGTTCCAATTTTACAGCTCTTCGGTGTAAACAAGACT
ACCCAGCTAAATTCCACGATTTTTCAGCACTCAGTTTCCATTTCACTCAA
TTAAATCTTGGGAAATTAGCGCGCGTGCACGCAAAAAAACAAAAATTGGG
GTTTTACTTTGCGCGGCCTTGAAAATCAGTCAATCAGCTTCAGACTTTTG
TTTACTATAAATATAGAGGGGGTACCCAGTCCAGTATGGATTTTGTGTAA
CTAACATCAAATATCTTCGCGCGTGCACGCAAAAAAACAAAAATTGGGGT
TTTACTTTGCGCGGCCTTGAAAATCAGTCAATCAGCTTCAGACTTTTGTT
TACTATAAATATAGAGGGGGTACCCAGTCCAGTATGGATTTTGTGTAACT
AACATCAAATATCTTCGCGCGTGCACGCAAAAAAACAAAAATTGGGGTTT
TACTTTGCGCGGCCTTGAAAATCAGTCAATCAGCTTCAGACTTTTGTTTA
CTATAAATATAGAGGGGGTACCCAGTCCAGTATGGATTTTGTGTAACTAA
CATCAAATATCTTCGGCGTACAACTGAAACGTTTTTGGCGTAAGGGTACT
TACAAAGATTGTTTGATTTTCAGTTGGCGTAAAGTAATAATTCCAGCTCG
GCGTGAATGACTCCATAATTCATCGATTTTTAGCTTTCATTTGGCTAAAT
TTGCTTTGAATTTGAAATTCGAAATTTTTTGTGATGGAAGATAACAGGTT
TTTAAAAGAGGAAAGTCAGTTTCAGAACTCTTCTTGCGCAAATTTTCTTA
TAAAAAACTTTTCTCTCGCAATCAGCCATATTTACAAAAATCCCGAATTT
CATGATTTTTTTACTTGGCCTCGTTCAAAATCGGTTTGGTGTTGTTCTAG
TGCTCCGTTTATTTTAATTTTTGGAGAGATTGCAAGGAATAGTTTGAGGA
TGCACAAAGGAAGTTCTCTACAAGGTTGTTTTTGGTTATTTTTTTCAAGT
TCAAAGACGCTCATTCGTGCACTGAGGCCGTCCGTGCACTGGTGACATGA
CTCTATACGAATGATGATGTGAAAAAGATATCGAAAAAATTAAAATTAAA
TCCCCACCAAAAATCGCATTTTGGCCAATCGCCAAATAAATCCACGCCAA
AATTAATCCACTTTTAAGGTACAACCTTGAAAGTTTAAAGGAAATCAGAA
AAAAAAACTAAAATGTTTCTTTTGACCCGAATCCAGAGAAAAACCCTAGC
AAAGCATTGGTATCATCCTGATCAATTTCTATGACCTAGCCCCTGCAAAT
AAAGCTATGAGCACTAATTTTCTCTTTTAAGCAGTTGGTTGTAGTTTGGT
ACATCGTACCATGAGATCAGGTAACTTGCATCAGTGGAGGCTAATATGCA
TAGCCCTCAAATGCAAAATGAATGACCTAGCTGGTCATTAAAATACAAAG
TTAAATCAAAACAAAAATGGTAGAGTAGAGCTGCGAGCGAAGCTGGGTAG
CTCTTTTGTTTTGAAATTTTGCTGCTTTGATTGGTCAGTACTGTGAGTGG
TCCTAAATCTGACAACCCTGCCTAAATCATCCGACCCCACAAATGACTGC
TATGATAAAAAATTCTATGTTTACAAAGATTCCCTCTCCAAGTTGATTAA
TAAACTATATTGCAAGAACTCTTGAAACAAAACATCTAACAAGATGGACT
AAAATGTCAAGATGTTAATTAATGTGATAAGAAAAGTTTGAGTTGTAAAA
ATAATTACTTCTATTATTCTGAATCCGTTGCTCGTGTTTAAAACCTTTAC
AATTTTGTAATAAAAAAATATGTTTTGTATAAGAAGCAATTAATGTTTTG
GTTCAATTGGCTCAGTGTATCAAATCTCTTAGCTTAGTTGACACTTTGGT
ATCTTCATTGCATCACAGTGAAAGGTTTGTTTTTATTTTAGTTTGTATCT
TTGAAAGACCCATTGGATTTAGGCAGGGTTGTCGGATTTAGGACCACTCA
CGGTAATTTGATGGCTATGCAAGTTTCCCTCCACTGATGCAAGTTACTCG
ACTTCATGGTACTGGGCACTAGTACCACTCACTTTGAAAGTTTTTTATTC
TAAGAAGATCGCCTCAAACAAAAATCAAAACAAACATGAAGAGCGTGCTC
AAAGTTGTCTAAGTGTTGGTCAAAAAGGGTTTTCAAAAAAGTTTAATGAA
AGTGAGAAAGTTGAATTAAGAAAAATCGGTCCCCAAATGGTCAGGCTGTC
AGAGGGCTTAAGCTCCGCTCCGCTAAAAATGGCATTTTCGTGAATCACAA
CTTAAAAGTGAACAAATTTTCAAAAAGAAATTCAAAAAATTCCATTTTAG
GTTAGTTTGTAATAATTTAATAAAGATCTGGAAAGTTTGAAAAATGTTTA
AGTAGAGCAGGTGTGCCCCCCCCCCCAGTATTCGATCTTCCAGGTCTAGA
GCAAATAGAAAATGGAATAGACTCCTCTCCTCCAGTCTCTGCCAACATAC
AACGAGATGAATAAATTTACCTTACTTACCTTTTCTTCTTCTTCTTCTTT
ATTTTTGCAGGGAGTTCATAACAGAAAATGGGGCAAGGCACATCTTCAGA
GACAGATGCTAAATTGAAAGCATTAGTATCCAAGCTTAGCAAGCTGGAGA
TTAAAGATATTGAAGCAGTTTTCATGTAAATCTACTCTTTTTAATTCTCT
TTAGTATTACACTCTGATGGTAATTTTTCTGAACGTACAATGATCTTTAT
CTTTATCAAACTAATGAACAAGACAGTTTGAAAAAGAAGCAATGGGAAAA
AAGTATTTTATCAGTGTCATAAAAATTGTCTTATACAAGCTTTCACAATA
AAAAATTAGCTGTAGCTGAATTTTGATTCTTAATAGATTCTTCTTCACTC
TTTCTCCTATAGGGAGTTATCTACTACTACTGATGAAGGACAGTTTGTTA
TCCAACAACCCTCATGGCTCAATCGTGATAAATTTGCTGAAATATTTGGT
TTAAATGATCTGATTGTGGAACAGTTATTTCAAACATTCGACCGTGACAA
GGTTTACCCTCATCTTTTCATATTAGTTCTTCATTGTGTACTATAGAAGA
ATTATTTATAAGCACTTGTATGTAGAAGAAAATGCATTGATATGATCAGG
CATAATGGTCTAACCAATGTCAATTAATTATCTACCTGGTCAGGAAACTC
AACCAAAAAAGCTGAATTTCATTTTGTTTTGGTCATGTGTGATCAACATC
CATGTACAATCTGCAGTCGTTTTTCTGGGGGACATCACATTTCCACTCCT
CTGCAAGGACTTCCCAAATTTTATTTACTTCTCTCTGGGGCAGATTTTTA
TCATGTGATATTGATGAATAAAAAAATATCAGTCTCAAAATTCAAAACAG
CCAGACTCACATGGTCTTGTTATTTGAATTTTGAGATTGATATTTATTCT
ATTGACTATAATACTGATTTATCATGTTCTAGAATGGTATTATTGATCTG
CAAGAATTTGTTACTGGTATGGCATTGTGTTTGCATGGTGGTATCAAAGA
AAAATGTCACTTATTATTCAAGATTTTCAATTTGGTATTTTTTTGATACG
CTTATATCATTATCTAGAATTTAGGCACAAAAGTGTTTATGGAATCTATG
TCTTTCGGTATTGACGAGGCTAACCTTGATGTTTCCTTTCTTCATCTGTC
ATCTGTGTTTCTTATGTCTGATTTGATTTGGAAACTATATTTCTAAAGAC
AATATCAAAGAAAAAGAGAGTGATACTGTTTGCATTAGGTTTTGGTTTAT
GTATCAGCATAATGTGAAGTAGTCATACTAACAAGTCTGTTTTTTTCCTC
TACTTTATAGAATGGGGATGAAGGGATTAGCCGTGAAGAGTTATCGACAG
TTTTAACCAGTTGTTTGATGTCAGCCAATACCTTGCTTCAAAGCACATTG
AAAACCGAAGGGCTGTCAGCATTTGAGAGTCAGCTAGCTGATCAAACTGG
TGCAGCTGTTATGCTTAATGTTGTGGTCGATAAGTGAGTATTATTTTCTC
ATCCAATACACTAAAACTTACCACTAAAAGTCCTATAAAGGTGGTTGGAT
TCGAATTTATCCACATAGCTAATAGACATGAATTACTCTTTATTTGATTT
AATGCAAAGACAAAAAGAAGAACTTTTTCTCCCCAATGTGTGTTTTACAT
TTTAGAATTGTGAAGGAAGCATTTGACACTTGTGATGTTTCTAACACTGG
AAAGCTGGAAATTGATGTAAGAAAACATTTTAACTCGCTGTATTTAATTT
ATTAGATTCTGCTAGATTCTGAATCAACTGACGATTTTATTTTTATTTTC
ATCAACTTCTCAGTAATGTTTTTTCTCTCAGGAGTTTGCCAAATGGGTTC
ATAAAAATCCCAAATTGATGAACAATATTTTTGTATTGCAATGTCCTAAG
CCAACACCATCACCCATTAAAAGTAAGAGTTTGTTTGTTTTTTAAACATA
GGAATTTGATTTTTATTCCCCTTTTGAAATATTGTTGAACAAGTCTTATC
TTGCATCCTAAACTATTGAACTCTAACCAAAGTATTGTACAATAGAGAAC
TTTTGCAAGCTAATGATGGATGGGAAGTTCAAAGAATTGAAGTTTTTGAT
ACCAAGACTATTATTTTCGTTCAACCTTGACATAACATGAATCGGGAAAG
ATCTCTTTACAATGTAAAGATATGTTTTTTTCTTTTTAGGCTCAGAAAGT
AGTTTTTCTGTTTTAACAATGGCTGGCCAGGATGAAAACATCCCTGAGGA
AAACTCCAAAACGAAGATTGAGATGGCTAGATCAGGTAAAAAACATATTT
TCATGTAAAAATGCCAAGTGAACAGTTGTTAACTTTTGTTACCAGTTCAG
CGAGTAACAAATCAAAACTATGATTCATAGCTTGCTGACTGCTGATTGCC
AATTGTTAGACCAAGAAGTAAGGGCTTTTTGCTGCATATTTTGACCTTTT
TTTTCCATCTTCACAATCAAAACTGAGTAAATTTTCCTTATTTTGTACGA
TGACACCCCCTTCTCACAGACCCGGTAGGAATTTTTCAGCCAGTGGGTAT
AAAAATAACGGACTGAAACTCGATGGGGATTGATATTCCCATATTGTTAA
ATATAGATTTTATGACTAAGGATTTCACTTCTTTTGTTTTCAAGGAAAAA
ATAGCATAGCATTTTGCAGTGAGGATTGGTTTATTTGATTATTTTCAGTG
GGGACAAAAATTGGAGGATAATTTTCCACCGGGGACGATATTTTGGACAA
TTTTTCCAGTGGGAAAACCTTGGTCCCAGTGGGTCTGTGAGAAGGGGGTG
TACGATGGTATGTACAAGTTTTCGCATCTTTATTATTTCCAGTTTCTCAA
ATAACAGAAGAGTCGACAAAATCATTACTAGAACTTAGCCAAGAAACCAA
CACACCGACAACTGCTGGTGATCTATTCAAAGAAACAAGCCAACCTTCTG
CTGACGGTGCAGATTTTTTCGACACACTTGGTTCACATAATGAAACACCT
TCTCAAGCACCAGCCGGTCAGTTACCACGTCCAGCTAGTGAATTATTCCT
ATCCTCAGGAAATGAAAACTCAAATATAGATGGTTTGCAGCACAGTACAA
GCCATAATGATCTCGCTTCCTTGAAACAACAGCCCGCTATCAGCCATTTA
CAAAACGCAGAGAGTATGCAATCAATAGCTTTATCCAGAGACTCACTTGC
ACCGGATTCGCACAATGCATCACAAGAGTTAGGAACCTCAACAGAAAATA
TCACCTCATTAGTTCCTCAACATCATACTGAGCCAACAATACAACTTCAC
CAAGAAAACCAGCAACAAACACTGCCCCAAGTTGATCCATCCTCATATCA
ACAACAACAACAAAGCCCCACCCAAGCACAACAACAACCACCCATCCAAC
CGCCCCAGACCACCATGCAAACACAATACCAACAGCAACAAAAAACAGAC
CATTCACAAAGCTTTGATAACCCTGCGCTAGCATTGGAGACAGAAGTCAA
CAATGAAGTGTTTCCAGAACAACCAGCCGTTATTCAAAACACTATTTTGG
ACAATGTATGATAATTCTATTCATTCCTTTTTTTTGGACCTACCCCGGTG
GGGTGGAGGTCCTATAAATTAACCTGTGTTCGTTCGTCCGTCCGTCCGTC
CGTTTGTCTGTTACCAACTTTTCTCAGGATTGAATCATAGGAATCTTTTG
ATTATTGGTACAAAGGTGCAAAATGGTGGTGGCCAAAATGTGACGGAGCC
TGATTTTCGAGAAAAAAAATTTTTGGGTAAAATTTGGGCCAAAAAACGGC
TAAAAAACGGTTTTTTTGGACTTTATGAAAAATTGGATCATTAATTTTTT
CTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAGATGGCTCA
AGCAGATTTTTGCAAAAAGATTTTGTTTTTCTATAAGAATCACTATTAAT
AAGCATACATCAATGTTCTTAGTCCAATTACTCAATTTTTTTATGAGATA
GATGTTTTTTTTGCTCATAATGGCTTACTTTTGAAGAATATGTGTTTTTA
GACATGAATTTTGGTTGCTTGGCGTGTTTTTATAGAGAAACTGGATAAAT
TCGATATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTC
TCAAGATTGGCTCTTTCATTCCTAATGATTTTTTGCACAATGATGCATAA
CTATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAAAACAATGTTTT
TGGGCAAATTTGGGCCAAAAAAAAGCTAAAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTC
GAAAAATAATGTTTTTGGGCAAATTTGGGCTAAAAAACGGCTAAAAAACG
GGTTTTTTGGACTTTGTGAAATATTGGATCATTGTTTCTTTCAGATTATT
TTGCATGAAAGTAGGTAAAAGATGGCTCAAGCAGATTTTTGTGAAAAAAG
AATTTTTCAACTCAAAAAAAACGCATCTTTATCTATAAGATAAGAATCAC
TATTAATAAGCATACATCAATGTTCTTAGCCAAATCACTATTTGTGTTCT
GAATGATTGTTTAGCGGTCATGCTCACATAGAGATATCAATTATATATGT
GTGAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTATATTTT
GGCTCTACATTTTAACCTTGGCGGATAAGCTTTTCATTCAGAATAGTAAT
TTTAAATTCGCCACTGTAAACCCGCCGGGGGGTATTCAAATAAAATGGGT
GTCGTATATGCGAACAACAATAAAACATCAAGTTAGTCTCTGACAGGCTC
CTAAAAGTATGAAGTACAAAAAAATTGACTTACCGTATTACTTCGGATCA
ACGCCCCCTTCTTTTAAACGCCCCCTTCGAATGAACGCCTTCTCTAGGGG
AGGGGCGTTTATTAGAAATTTGGGACTTTAATACTTCAGTACCAGCGTTG
ATTGGGTTTGAAAAGGAAGATTTTAGTCATTTCTTGTAGCCAGAGCAGTT
TTCGATGCAATTTTAGTCGTTGAAACAAAGAAATTTTGCACTAAAATCCT
GATAAAGAACTAAAACAAAGGGTATACTTGCTCTAAATATTCGACTTTAG
ACTAAAATAATTCAATAAACGCCCCCTTCTTTTAAACGCCCTCTCGAATA
AACGCCCCTCCAAAAATCGAAAAAATTAAATAAACGCCCCGGACGTTTAT
TCGAAGTAATACGGTATTCAAAGGGTCATTAAATCTCGTTATTCAAAAAA
AATTCTGACTGAAGTTTGGAAAATAGTCCCAGGGTTGTAAAAACGTACTA
CAAACCTGGTACCCTCCGGGCTTCAAACTAATTTTCACTTTTACTCCTAG
AGCCAAGTATATAACGACAAATTAGTGGACCCGGCACAAGAACAACGGCG
TCGTGGATGTTCTTTTTGGCAACCGAGCACTAACACTGAACGTCTTCTGC
AACAATACAAACAAGGTGCTATCCCTGAGATGAATGTTCTTACGTCTCCA
TCCGTCTTGGTTGAGAATCTCATGGTATGATCACTTACTCTCTTACAGTT
TCTATTTCCAGAGTTTATTCACTGAGAATTCAGCCTGATTTTAACCCCAA
CTTGGGTGATTTGGTTTCTTTGTAGTTGAGTAAGAAGTAAGATGATAAGG
AAAAATTACAATTGAGCCTGTCTTAATCCCAACTATCCATTACCATGCGT
TAAAAAAACCTTGGAATTACAATTAGATACTGAAGTTGAGCATACAAGTG
GGTTTTAGTACGTTAGTGTTTTTATAGTACTGGCAACAGAAAATCAATGT
GTTCTTTCTACCGCTTTCTTACAGGGTGATCCAGTGAAAGACTTGGTACG
AAAATATTTGGGTGAGCAAGAAGCCAACAAGAGACCAACACTGATGGCCA
ATCAAGTGGAGATGAATGAAAATGGATTGAGAAGATTATTGGTAAGTTTC
TTAGGTTTGTTTTGTAACAGTAGGGCTGTGCTCTTCCTCGCGATAGAATT
ATTTTCTACTTTATTTATAAAGGAGATTTCGAATTAAAGAAAGAGCATAT
GAATTATATCAGTACGATTGAAATTAAAAGTTATACCTCGAGAGTTAAGT
TATGAGTTACACCTAAACTTTTTTAAGTTTTACCTCGTAAACTTTCTGAG
GCTTTTGGAGCAGATGGGAACTTTCTTTCGGAAAAATCTTTCTTTCTTGT
CTTTACAGGCTGCAGGATGTTGGAGAGCGGCAGTGGACTTTACCACTAAA
TATCTGACAGCGCACGGCCAAGGGCTTGTCTCCATGGGACAAAACCAAAG
ATCCAATTTGAGCCCTTCCATTTTACAGGTAAAGTGCCTTTTAATAGCAT
ACCGCAGTGATTTTAAAAATAGACATCAAAATTACTGTTTGTCCGAGTTT
TTAATCCCATCATCTTTTGCATTAATTGCTTTTGCAAGTCAATTAAACTT
ATTGACAATACAAAAGTAATAACTTGCACGCATTACGAATCAAGATGAAA
AGAATTGTGCGATTGAATTTCTGTCAAATGTTAAAAGTAATAATTATGAC
GTTTGCATAGCAGTGTGCTATTGAAACTATGGCATCAAACTCCTTATTTG
GCACCTTATGAAACTGTTATGCACAAAATGAATTACTTTTTGCTAAAGTT
CAGACCGTTTCTTTTTAGATTTGGTTCGTACGAATCGCTCTACTGGTCAA
GTTGAGAATGTTCAGTAGTGCAGAAGCAGAGTTGAGCGCCTTCAAAGAAT
TTGACGCCCCAGATCTTTATTATCAATATTACCCTGAATTATATCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043843XLOC_043843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070400-exon-scaffold_55-1575043694:161652..161794TCONS_00070400-exon-scaffold_55-1575043694:161652..161794Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:158820..158934TCONS_00070400-exon-scaffold_55-1575043694:158820..158934Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:158444..158582TCONS_00070400-exon-scaffold_55-1575043694:158444..158582Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:157911..158012TCONS_00070400-exon-scaffold_55-1575043694:157911..158012Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:157462..157634TCONS_00070400-exon-scaffold_55-1575043694:157462..157634Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:157229..157289TCONS_00070400-exon-scaffold_55-1575043694:157229..157289Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:157023..157113TCONS_00070400-exon-scaffold_55-1575043694:157023..157113Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:156660..156755TCONS_00070400-exon-scaffold_55-1575043694:156660..156755Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:155390..156102TCONS_00070400-exon-scaffold_55-1575043694:155390..156102Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:153371..153544TCONS_00070400-exon-scaffold_55-1575043694:153371..153544Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:152954..153070TCONS_00070400-exon-scaffold_55-1575043694:152954..153070Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:152567..152686TCONS_00070400-exon-scaffold_55-1575043694:152567..152686Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1575043694:152096..152226TCONS_00070400-exon-scaffold_55-1575043694:152096..152226Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:161652..161794TCONS_00070400-exon-scaffold_55-1510915933:161652..161794Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:158820..158934TCONS_00070400-exon-scaffold_55-1510915933:158820..158934Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:158444..158582TCONS_00070400-exon-scaffold_55-1510915933:158444..158582Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:157911..158012TCONS_00070400-exon-scaffold_55-1510915933:157911..158012Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:157462..157634TCONS_00070400-exon-scaffold_55-1510915933:157462..157634Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:157229..157289TCONS_00070400-exon-scaffold_55-1510915933:157229..157289Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:157023..157113TCONS_00070400-exon-scaffold_55-1510915933:157023..157113Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:156660..156755TCONS_00070400-exon-scaffold_55-1510915933:156660..156755Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:155390..156102TCONS_00070400-exon-scaffold_55-1510915933:155390..156102Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:153371..153544TCONS_00070400-exon-scaffold_55-1510915933:153371..153544Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:152954..153070TCONS_00070400-exon-scaffold_55-1510915933:152954..153070Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:152567..152686TCONS_00070400-exon-scaffold_55-1510915933:152567..152686Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1510915933:152096..152226TCONS_00070400-exon-scaffold_55-1510915933:152096..152226Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:161652..161794TCONS_00070400-exon-scaffold_55-1491911889:161652..161794Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:158820..158934TCONS_00070400-exon-scaffold_55-1491911889:158820..158934Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:158444..158582TCONS_00070400-exon-scaffold_55-1491911889:158444..158582Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:157911..158012TCONS_00070400-exon-scaffold_55-1491911889:157911..158012Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:157462..157634TCONS_00070400-exon-scaffold_55-1491911889:157462..157634Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:157229..157289TCONS_00070400-exon-scaffold_55-1491911889:157229..157289Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:157023..157113TCONS_00070400-exon-scaffold_55-1491911889:157023..157113Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:156660..156755TCONS_00070400-exon-scaffold_55-1491911889:156660..156755Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:155390..156102TCONS_00070400-exon-scaffold_55-1491911889:155390..156102Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:153371..153544TCONS_00070400-exon-scaffold_55-1491911889:153371..153544Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:152954..153070TCONS_00070400-exon-scaffold_55-1491911889:152954..153070Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:152567..152686TCONS_00070400-exon-scaffold_55-1491911889:152567..152686Clytia hemisphaericaexon
TCONS_00070400-exon-scaffold_55-1491911889:152096..152226TCONS_00070400-exon-scaffold_55-1491911889:152096..152226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:152096..161794 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	6.36783e-08	0	0.176771	0	0.283468	0.000495716	2.3366e-07	0.000110681	0	6.16541e-08	1.61697e-07	0	7.64457e-10	0	0	0	0	0	1.02878e-08	0	0	0	0	0
Blast
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BLAST of TCONS_00070400 vs. Swiss-Prot (Human)
Match: TPC12 (Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 8.542e-32
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 2 
Query: 1700 WQPSTNTERLLQ----QYKQGAIPEMNVLTSPSVLVENLMGDPVKDLVRKYLGEQEANKRPTLMANQVEMNENGLRRLLAAGCWRAAVDFTTKYLTAHGQGLVSMGQNQRSNLSPSILQIWFVRIALLVKLRMFSSAEAELSAFKEFDAPDLYYQYYPELY 2170
            W P   T  +L+    Q +     +   LT P +  +N+ GD VKDL+ ++LGE+ A KR  L A+ VE +  GL++L++   WRAAVD   + LTAHGQG    G    ++ +   LQ+WFVR+ALLVKL +F +AE E   F   D PDLYY+YYP +Y
Sbjct:  310 WLPGEATRGVLRAVATQQRGAVFVDKENLTMPGLRFDNIQGDAVKDLMLRFLGEKAAAKRQVLNADSVEQSFVGLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSG--LLTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVY 468
The following BLAST results are available for this feature:
BLAST of TCONS_00070400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPC128.542e-3242.86Trafficking protein particle complex subunit 12 OS... [more]
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