TCONS_00070282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070282
Unique NameTCONS_00070282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070282 ID=TCONS_00070282|Name=TCONS_00070282|organism=Clytia hemisphaerica|type=transcript|length=1542bp
TGTTAATTATTGCATACGGAGTGACATCTATATTACTGGTAATTGGGCTT
GTGCTTGGGTTTCGATTATGGCAAGGAAAGAAGAACCAAGTTGTTATCAA
CAATCCAGCCTTTGtcaatttccaacaaaaataTTTCCGTGTTTATTTCC
TTGCATTATTAGCTGAATGGCTACAAGGACCGTATTTATATAAATTGTAT
CATGATTATGGTTTTGTTGATCCTTTCATTGGGATTATTTATGTTTGCGG
GTTTGTATCAAGTATTGTTTTTGGTACATACACTGGTATACTTACTGACC
GACTTGGTAGGAAAAAGtgATTGAACTACTTTGTGGTATATACTTCCCAG
CTATGGGTTACCTGAGAACCAAAGTGTTGCCAGCTGCACATCATGCTGTT
ATAATGAACTGGTTTCGTGTACCGTTGAACGTGATTGCAAGTATAGTGTT
ATTGGTGTTACACGATAGTCATAGCCCACACGGTATCACGCAAATGTTCA
CACTCTGCGCATGTCTCTTGATGGTTGGTGGTTTGTTTGCAACGTTATTG
AAATTTACGGTGAATGATAATGAAATGGATGCGAATACAGAAAATGAAGA
ATTGGCTTAGATTATCTCTtcaataaaactaaaattttcatttttcttag
tTTATTCTGATCAAAACAGGATCCTGACTAACTATCAACAAAGTTAACTT
ATTTGAGAATAAGTGGAGTTCCCTGCAAAGTTTTAAACCCCACAAAGGAT
TTTTAAAGTGAAATTGCTTACTTCCatttccaaaatcgaaatatccaatg
aaatatatagaaattttgaaattgacattctcgcccAAACTTTGAATTCT
GAAAACATTAAAATTCCCCGAGATATTAATATATCAATctcaaccatgat
tgtagcttCTCTTACTcgttaaattttcaaatgtcaaatgtcTTGTTGTG
GTGAGTCTAAGGGTGTATTAGGATTTTATTTGGCAATTGAACTTAAAATA
ATGTTTTATACATCTAAATCTTTTTTCCGTGGAGAACATAATTAGATATT
CTAATAGGTGACtgtcattttttattattattctttGTATAGAGACAGAA
TCATTGGTAGTTTTAGGAGGGGGTACagccgcagggtactaacccatagg
gtactaacccTGATTTACAGAAATATTTGTGTAAGGTACcaccaccccct
ttttagtaccTGGCACCTacttttttgaggaaaaagggAATTGGCAAAAC
TTATATTGTGACTTGCCAAAATCGATAAATTTATACCCATTTTAGTTTAC
CAACTAAATACCGATATTAACACTACTTGAAAGAAATGTGATAAATTTAG
TatcgggtactaacttttttgagattcaaaGTTAGACACCGCCACATGGG
TCAGTACTCTGCGGCTGTACCCTCCCCCCTggtagttttattttttattg
aatattaaaatctcaaaaatagtataaaaaattttaatcaaatattttat
ttattcttttagCAGAAAATATATCCATAGTAATTTGTAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_52:8024..12318+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070282 ID=TCONS_00070282|Name=TCONS_00070282|organism=Clytia hemisphaerica|type=transcript|length=4295bp|location=Sequence derived from alignment at scaffold_52:8024..12318+ (Clytia hemisphaerica)
TGTTAATTATTGCATACGGAGTGACATCTATATTACTGGTAATTGGGCTT
GTGCTTGGGTTTCGATTATGGCAAGGAAAGAAGAACCAAGTTGTTATCAA
CAATCCAGCCTTTGtcaatttccaacaaaaataTTTCCGTGTTTATTTCC
TTGCATTATTAGCTGAATGGCTACAAGGACCGTATTTATATAAATTGTAT
CATGATTATGGTTTTGTTGATCCTTTCATTGGGATTATTTATGTTTGCGG
GTTTGTATCAAGTATTGTTTTTGGTACATACACTGGTATACTTACTGACC
GACTTGGTAGGAAAAAGGTGTGCGTATTGTTTACTATTTTGTATTCAATA
TGCTGCTTTACAAAGCtttctcataatttttttgtattatgTCTTGGAAG
AGTACTAGGTGGAGTATCAACTAGTTTACTCTTTTCTGCATTTGATTCTT
GGTATATGTTTGAGCATACACAAGCTTATCAGTTCCCTACAGAATGGATG
GATGTCACTTTCTCAAAAGCTACCTTTTATAACAGTGTTATTGCAATCAC
AGCTGGCTTTATTGCTAATTTGTTATCTGAATGGCTTCAATTTGGACCAG
TTGCACCATTTTTATTTGCAATACCTTTTCTTGTTGTGGCTGGAGCACTG
ATCCAAGTCACCTGGTCTGAGAATCATGGAAGATCTGGCCAAGCATGTAA
AGGTNATTAGATAAGACCttgttgacagatttttttgGCAGTGTCCACTC
TACAGAGATAACAAAACAGTATGATTTTGAACTTGAAACCGAAGAAGTCA
CTGTCACTGAAGACAAAACAAATATCAATAAACAACCTAGCAAGAAATAT
TCTTTTGTTTCCCAGATTCCAACATTGTAATATTTGGTGAACTGGATAAG
CTttcttgtgaaatatttaagaCGTTTTGTAAttcttatcattttttttt
tcaatgtagaaccaaaaatcttattatttattattttgtttttacccCTG
TTTGTCTTTTGTCTTATCATTTTCTCCTGCcaaatcattttaatttgagC
GAAATATTCTTTTAAAGTGGTTGCTCCACAGTGAAATATTTAATCATTTG
ATCACAGTATTGAAATAAGGATGTTTGAGGactcaaatttcataaatttc
ttttctttatttagtgaaaataaaataaagaaatagaaagaTGTTAATTA
TTGCATATGGAGTGACATCTATATTACTGGTAATTGGGCTTGTGCTTGGG
TTTCGATTATGGCAAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGC
CTTTGtcaatttccaacaaaaataTTTCCGTGTTTATTTCCTTGCATTAT
TAGCTGAATGGCTACAAGGACCGTATTTATATAAATTGTATCATGATTAT
GGTTTTGTTGATCCTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATC
AAGTATTGTTTTTGGTACATACACTGGTATACTTACTGACCGACTTGGTA
GGAAAAAGGTGTGCGTATTGTTTACTATTTTGTATTCAATATGCTGCTTT
ACAAAGCtttctcataatttttttgtattatgTCTTGGAAGAGTACTAGG
TGGAGTATCAACTAGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGT
TTGAGCATACACAAGCTTATCAGTTCCCTACAGAATGGATGGATGTCACT
TTCTCAAAAGCTACCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTT
TATTGCTAATTTGTTATCTGAATGGCTTCAATTTGGACCAGTTGCACCAT
TTTTATTTGCAATACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTC
ACCTGGTCTGAGAATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTT
TGAAGGACTACGTCTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTG
CTGTTCAAGCAATGTTCGAAAGTGTCATGtacatttttgtgtttttatgg
ACACCAGTTTTGCTGCCAGCTGAACCCCCCCTTGGTGTTGTGTTTGCTTC
TTTTATGTGCTCTATATGGATCGGAGGAAGCTTATTTGAACATCTTGtag
caagaaaatataaaacGACAACAATCNCAAGTTGTTATCAACAATCCAGC
CTTTGtcaatttccaacaaaaataTTTCCGTGTTTATTTCCTTGCATTAT
TAGCTGAATGGCTACAAGGACCGTATTTATATAAATTATATCATGATTAT
GGTTTTGTTGATCCTTTCATTGGAATTATTTATGTTTGCGGGTTTGTATC
GAGTATTGTTTTTGGTACCTACACTGGTATACTTACTGACCGGCTTGGTA
GGAAAAAGGTGTGCGTATTGTTTACTATTTTGTATTCAATATGCTGCTTT
ACAAAGCtttctcataatttttttgtattatgTCTTGGAAGAGTACTAGG
TGGAGTATCAACTAGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGT
TTGAGCATACACAAGCTTATCAGTTCCCTACAGAATGGATGGATGTCACT
TTCTCAAAAGCTACCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTT
TATTGCTAATTTGTTATCTGAATGGCTTCAATTTGGACCAGTTGCACCAT
TTTTATTTGCAATACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTC
ACCTGGTCTGAGAATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTT
TGAAGGACTACGTCTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTG
CTGTTCAAGCAATGTTCGAAAGTGTCATGtacatttttgtgtttttatgg
ACGCCAGTTTTGCTGCCAGCTGAACCACCTCTTGGTGTCGTGTTTGCTTC
TTTTATGTGCTCTATATGGATTGGAGGAAGCTTATTTGAACATCTTGtag
caagaaaatataaaatgacgacaattgtttgttttgttgtCTATGGAGTC
ATGTTTGCTAATGGTGGAGCAGCTTTTGCTAGTGCTAATCATCCCCGTAC
CTcgtatttattatttttagtgATTGAACTACTTTGTGGTATATACTTCC
CAGCTATGGGTTACCTGAGAACCAAAGTGTTGCCAGCTGCACATCATGCT
GTTATAATGAACTGGTTTCGTGTACCGTTGAACGTGATTGCAAGTATAGT
GTTATTGGTGTTACACGATAGTCATAGCCCACACGGTATCACGCAAATGT
TCACACTCTGCGCATGTCTCTTGATGGTTGGTGGTTTGTTTGCAACGTTA
TTGAAATTTACGGTGAATGATAATGAAATGGATGCGAATACAGAAAATGA
AGAATTGGCTTAGATTATCTCTtcaataaaactaaaattttcatttttct
tagtTTATTCTGATCAAAACAGGATCCTGACTAACTATCAACAAAGTTAA
CTTATTTGAGAATAAGTGGAGTTCCCTGCAAAGTTTTAAACCCCACAAAG
GATTTTTAAAGTGAAATTGCTTACTTCCatttccaaaatcgaaatatcca
atgaaatatatagaaattttgaaattgacattctcgcccAAACTTTGAAT
TCTGAAAACATTAAAATTCCCCGAGATATTAATATATCAATctcaaccat
gattgtagcttCTCTTACTcgttaaattttcaaatgtcaaatgtcTTGTT
GTGGTGAGTCTAAGGGTGTATTAGGATTTTATTTGGCAATTGAACTTAAA
ATAATGTTTTATACATCTAAATCTTTTTTCCGTGGAGAACATAATTAGAT
ATTCTAATAGGTGACtgtcattttttattattattctttGTATAGAGACA
GAATCATTGGTAGTTTTAGGAGGGGGTACagccgcagggtactaacccat
agggtactaacccTGATTTACAGAAATATTTGTGTAAGGTACcaccaccc
cctttttagtaccTGGCACCTacttttttgaggaaaaagggAATTGGCAA
AACTTATATTGTGACTTGCCAAAATCGATAAATTTATACCCATTTTAGTT
TACCAACTAAATACCGATATTAACACTACTTGAAAGAAATGTGATAAATT
TAGTatcgggtactaacttttttgagattcaaaGTTAGACACCGCCACAT
GGGTCAGTACTCTGCGGCTGTACCCTCCCCCCTggtagttttatttttta
ttgaatattaaaatctcaaaaatagtataaaaaattttaatcaaatattt
tatttattcttttagCAGAAAATATATCCATAGTAATTTGTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043767XLOC_043767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070282-exon-scaffold_52-1491911889:8024..8340TCONS_00070282-exon-scaffold_52-1491911889:8024..8340Clytia hemisphaericaexon
TCONS_00070282-exon-scaffold_52-1510915933:8024..8340TCONS_00070282-exon-scaffold_52-1510915933:8024..8340Clytia hemisphaericaexon
TCONS_00070282-exon-scaffold_52-1575043694:8024..8340TCONS_00070282-exon-scaffold_52-1575043694:8024..8340Clytia hemisphaericaexon
TCONS_00070282-exon-scaffold_52-1491911889:11094..12318TCONS_00070282-exon-scaffold_52-1491911889:11094..12318Clytia hemisphaericaexon
TCONS_00070282-exon-scaffold_52-1510915933:11094..12318TCONS_00070282-exon-scaffold_52-1510915933:11094..12318Clytia hemisphaericaexon
TCONS_00070282-exon-scaffold_52-1575043694:11094..12318TCONS_00070282-exon-scaffold_52-1575043694:11094..12318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:8024..12318 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.124763	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00070282 vs. Swiss-Prot (Human)
Match: MFSD5 (Molybdate-anion transporter OS=Homo sapiens GN=MFSD5 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 5.184e-19
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 3 
Query:   21 VTSILLVIGLV---LGFRL--WQGKKNQVVINNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKK 317
            VT+ L  +GL+   LG  L   + K      +NP+F+ FQ  +++VYFLAL A+WLQ PYLYKLY  Y F++  I I+YVCG  S+++FG     L D LGRK 
Sbjct:    3 VTAYLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKN 106

HSP 2 Score: 88.1965 bits (217), Expect = 1.587e-18
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 2 
Query:  317 VIELLCGIYFPAMGYLRTKVLPAAHHAVIMNWFRVPLNVIASIVLLVLHDSHSPHGITQMFTLCACLLMVGGLFATLLKFTV--NDNEMDANTENEE 601
            +IEL CG+YFP+M +LR KV+P    A ++NWFRVPL+ +A + LLVLHDS    G   MF++C+  +MV  L A +  FTV  +D E+   +  EE
Sbjct:  349 LIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLACLGLLVLHDSDRKTGTRNMFSICSA-VMVMALLAVVGLFTVVRHDAELRVPSPTEE 444
The following BLAST results are available for this feature:
BLAST of TCONS_00070282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFSD55.184e-1946.15Molybdate-anion transporter OS=Homo sapiens GN=MFS... [more]
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