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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070255 ID=TCONS_00070255|Name=TCONS_00070255|organism=Clytia hemisphaerica|type=transcript|length=654bp
CCATTTGGAAAGAGATGGTCACTCATCTACCCACTTTCGTAGAAATATTG
TACGCTATTGCAACTGGCAACCAATCAAGTCATAGTGAGAACATTAAAAA
ATCTCTTCGCATCAAATTTGTCACCATCTATTGCATTTTGATGAACGAGC
GATGGCATGAATTAAGTTTGTTTCAACGCGTCACTACTGTTTTGATGGTT
GAAGGTGGTTGCACAAAAGAGTTTCAGACCAGAATGAATCACCTGGGAAT
TTGTCTTTCACATACAAGaaaaccaaatttaataaagtTGATCGGTGGTC
ACTTTTGTGATAAAATTGTAGAATTAGTGAGAGAAAATCACACCTTCAGG
GGCACAGGTGACAATTGGGACATAAAGATCTTGGCCCATCACATGGCAAA
AGCCAAACAAAATGAGGACTTGCACCTTTTTGCCTCGAACTTGATTTTAA
ACCGAATCGATTTCAGTGATCTCCCAAATGACGTACCACTTAGGGACATC
AATCAACTtcctttgaatattttttctttgaatatcAATGAACTGAAATC
CTACTTCAACGCATCAAAGATTATCGTTGCCCGTATCCTTGTTGAATTCT
TTCCAAGATTTAGCATATTCAAAGATCTTATCCCAGACCATATCGAACAC
GCCT Run BLAST on NCBI protein sequence of TCONS_00070255-protein >TCONS_00070255-protein ID=TCONS_00070255-protein|Name=TCONS_00070255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
IWKEMVTHLPTFVEILYAIATGNQSSHSENIKKSLRIKFVTIYCILMNER
WHELSLFQRVTTVLMVEGGCTKEFQTRMNHLGICLSHTRKPNLIKLIGGH
FCDKIVELVRENHTFRGTGDNWDIKILAHHMAKAKQNEDLHLFASNLILN
RIDFSDLPNDVPLRDINQLPLNIFSLNINELKSYFNASKIIVARILVEFF
PRFSIFKDLIPDHIEHA Run BLAST on NCBI transcript from alignment at scaffold_516:441355..442557- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070255 ID=TCONS_00070255|Name=TCONS_00070255|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at scaffold_516:441355..442557- (Clytia hemisphaerica)
CCATTTGGAAAGAGATGGTCACTCATCTACCCACTTTCGTAGAAATATTG
TACGCTATTGCAACTGGCAACCAATCAAGTCATAGTGAGAACATTAAAAA
ATCTCTTCGCATCAAATTTGTCACCATCTATTGCATTTTGATGAACGAGC
GATGGCATGAATTAAGTTTGTTTCAACGCGTCACTACTGTTTTGATGGTT
GAAGGTGGTTGCACAAAAGAGGTTAGTATATGATCTCTAGTTTATCATGA
CAGGCTTTTATTTTTTCGAAGAGATTTTTTTTTAGTCTTAAGTCTCCTTT
TATTGTACTAACCAGTNAATTAAGTTTGTTTCAACGCGTCACTACTGTTT
TGATGGTTGAAGGTGGTTGCACAAAAGAGGTTAGTATGATATTTTTTCAA
AGAGATTCTTTTTGAGTCTTAAGTCTTCTTTAATTGTACTAGCGTGCTAA
ATACATGGATTGCTTTCCAAGACTGGCCTCCCCGTGGCGCAACCCGCAAG
TATCAGCTACCCAGTGACTTTGCCAGGACAATCTATCATAATAATATGGT
AGATGTTGCAGCTATGAGGGCGCTGAGAAACTAACAGGTCTTGGACATAT
ACAGTTATAGGTGTTGGGAACTACAAAAATATATTGTTTTTTCCAATCAC
TTATTGAAAGTCTGCATAAATCAATTTTCAAGGAAGGAAAAGAAAGAGTC
ATAAGTGACTTTCGTTCATTTCTTCCTTGTGTACACTTTCCATATCTCAA
TTATTTTTAAATCGATTCAGTTTCAGACCAGAATGAATCACCTGGGAATT
TGTCTTTCACATACAAGAAAACCAAATTTAATAAAGTTGATCGGTGGTCA
CTTTTGTGATAAAATTGTAGAATTAGTGAGAGAAAATCACACCTTCAGGG
GCACAGGTGACAATTGGGACATAAAGATCTTGGCCCATCACATGGCAAAA
GCCAAACAAAATGAGGACTTGCACCTTTTTGCCTCGAACTTGATTTTAAA
CCGAATCGATTTCAGTGATCTCCCAAATGACGTACCACTTAGGGACATCA
ATCAACTTCCTTTGAATATTTTTTCTTTGAATATCAATGAACTGAAATCC
TACTTCAACGCATCAAAGATTATCGTTGCCCGTATCCTTGTTGAATTCTT
TCCAAGATTTAGCATATTCAAAGATCTTATCCCAGACCATATCGAACACG
CCT Coding sequence (CDS) from alignment at scaffold_516:441355..442557- >TCONS_00070255 ID=TCONS_00070255|Name=TCONS_00070255|organism=Clytia hemisphaerica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_516:441355..442557- (Clytia hemisphaerica)
TTTCAGACCAGAATGAATCACCTGGGAATTTGTCTTTCACATACAAGAAA
ACCAAATTTAATAAAGTTGATCGGTGGTCACTTTTGTGATAAAATTGTAG
AATTAGTGAGAGAAAATCACACCTTCAGGGGCACAGGTGACAATTGGGAC
ATAAAGATCTTGGCCCATCACATGGCAAAAGCCAAACAAAATGAGGACTT
GCACCTTTTTGCCTCGAACTTGATTTTAAACCGAATCGATTTCAGTGATC
TCCCAAATGACGTACCACTTAGGGACATCAATCAACTTCCTTTGAATATT
TTTTCTTTGAATATCAATGAACTGAAATCCTACTTCAACGCATCAAAGAT
TATCGTTGCCCGTATCCTTGTTGAATTCTTTCCAAGATTTAGCATATTCA
AAGATCTTATCCCAGACCATATCGAACACGCCATTTGGAAAGAGATGGTC
ACTCATCTACCCACTTTCGTAGAAATATTGTACGCTATTGCAACTGGCAA
CCAATCAAGTCATAGTGAGAACATTAAAAAATCTCTTCGCATCAAATTTG
TCACCATCTATTGCATTTTGATGAACGAGCGATGGCATGAATTAAGTTTG
TTTCAACGCGTCACTACTGTTTTGATGGTTGAAGGTGGTTGCACAAAAGA
GTTTCAGACCAGAATGAATCACCTGGGAATTTGTCTTTCACATACAAGAA
AACCAAATTTAATAAAGTTGATCGGTGGTCACTTTTGTGATAAAATTGTA
GAATTAGTGAGAGAAAATCACACCTTCAGGGGCACAGGTGACAATTGGGA
CATAAAGATCTTGGCCCATCACATGGCAAAAGCCAAACAAAATGAGGACT
TGCACCTTTTTGCCTCGAACTTGATTTTAAACCGAATCGATTTCAGTGAT
CTCCCAAATGACGTACCACTTAGGGACATCAATCAACTTCCTTTGAATAT
TTTTTCTTTGAATATCAATGAACTGAAATCCTACTTCAACGCATCAAAGA
TTATCGTTGCCCGTATCCTTGTTGAATTCTTTCCAAGATTTAGCATATTC
AAAGATCTTATCCCAGACCATATCGAACACGCCATTTGGAAAGAGATGGT
CACTCATCTACCCACTTTCGTAGAAATATTGTACGCTATTGCAACTGGCA
ACCAATCAAGTCATAGTGAGAACATTAAAAAATCTCTTCGCATCAAATTT
GTCACCATCTATTGCATTTTGATGAACGAGCGATGGCATGAATTAAGTTT
GTTTCAACGCGTCACTACTGTTTTGATGGTTGAAGGTGGTTGCACAAAAG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070255-exon-scaffold_516-1575043694:442337..442557 | TCONS_00070255-exon-scaffold_516-1575043694:442337..442557 | Clytia hemisphaerica | exon |
| TCONS_00070255-exon-scaffold_516-1575043694:441355..441787 | TCONS_00070255-exon-scaffold_516-1575043694:441355..441787 | Clytia hemisphaerica | exon |
| TCONS_00070255-exon-scaffold_516-1510915933:442337..442557 | TCONS_00070255-exon-scaffold_516-1510915933:442337..442557 | Clytia hemisphaerica | exon |
| TCONS_00070255-exon-scaffold_516-1510915933:441355..441787 | TCONS_00070255-exon-scaffold_516-1510915933:441355..441787 | Clytia hemisphaerica | exon |
| TCONS_00070255-exon-scaffold_516-1491911889:442337..442557 | TCONS_00070255-exon-scaffold_516-1491911889:442337..442557 | Clytia hemisphaerica | exon |
| TCONS_00070255-exon-scaffold_516-1491911889:441355..441787 | TCONS_00070255-exon-scaffold_516-1491911889:441355..441787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:441355..442557 - |
Blast
The following BLAST results are available for this feature:
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