TCONS_00070252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070252
Unique NameTCONS_00070252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070252 ID=TCONS_00070252|Name=TCONS_00070252|organism=Clytia hemisphaerica|type=transcript|length=914bp
GGTGCTGATGTTAATTGTTAtcaattcctttgtttaaaCTTCAAATagga
aattgaaaatatttgatgtttgtcatcatcatcaaaggtggaaaaattta
gaaaattaaattattccTGAACGGTGGACCGGTAAGAACACTAATCCGAA
ATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTtcttgat
tgaaaatttgttgaaagataagAGCAGTGAAAGGAAAGATCACGATAAAA
GCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTCA
AGACCGAAGCTAGAAGattTATCAGACATCGAACTTTCCAGTGTGGACGA
AGATGATTTACAAGACTCATATTCAAAGAAACGAAGGATACTTTTCACAC
GTCAACAGACATGGGAACTGGAAAGAATTTTTCGACAACAACCTTACTTA
TCTTCACCAGAACGTGAAGTATTagcaaagaaaatcaacttgACTCCAAC
GCAAATTAAGATATGGTTTCAGAATCATAGatacaaaatgaagaaataCA
TGAAGGACATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAAC
GATCGTTACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAAG
TCCTCCATATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCAT
ATCTATCAACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAGA
AGCAGTATCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCATC
AACGCCAAGCACGCCCCAAGAATCGCCCCGTAAATCACCCTATTGGTCTT
CAAGCAGCAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAAA
CTTGTTTTCAACTT
Run BLAST on NCBI

transcript from alignment at scaffold_516:398517..403608-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070252 ID=TCONS_00070252|Name=TCONS_00070252|organism=Clytia hemisphaerica|type=transcript|length=5092bp|location=Sequence derived from alignment at scaffold_516:398517..403608- (Clytia hemisphaerica)
GGTGCTGATGTTAATTGTTATCAATTCCTTTGTTTAAACTTCAAATAGGA
AATTGAAAATATTTGATGTTTGTCATCATCATCAAAGGTGGAAAAATTTA
GAAAATTAAATTATTCCTGAACGGTGGACCGGTAAGAACACTAATCCGAA
ATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTTCTTGAT
TGAAAATTTGTTGAAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAAA
GCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTCA
AGACCGAAGCTAGAAGGTAAGTTTTGTGACTTTTGTGACTTTTTTTGACG
AAATTGGTTTTTAGAATGCATAATGGTTCTCGAAATTTGTTCTCTAAATG
CATTTTGAANCAAAAGTTGAAGATTAATAAAAAGTCTACTGTCTACCTAC
CCACTTGTTTTTTTAAAAAACTTTCCATTTATTAGCAGTTTACTCTGATA
TTTTAATGAAATTTTACTCTATTTCATTGAATTTTGTTTTGTATAGGGCT
TAGAACAAGTGCCAAGGAAATCAGTGATCAACGCTTGCCAATTTTTCTGA
TACAGTCTCCTCTTGAAAAAATTGTCAACAACTTTAATCGAGTTAACCCT
GTATCCTTTTTAAAACTTTAAAAGTCGGCTTCTGATTGGTTTATAGAACT
ATTGATAGGACGTTATTGTCCAATAGGATTGTATCTTGCTTCATTCCCAG
TCATTCACAAGAAAAGTTTGACGTAAGTGTGAAAAACATCCTAATCCAAT
TTTTGCGATAAAAATCTAGCGCATTCTGATAACTGAAAAGACAAAAATCA
ACTTAATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATTTCAAAA
ATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGAATCAAG
GTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAAAAATTG
AATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGAATAAAA
AAATTAACAGGAAATCTTAACATTAATAACAATTAATTTTATTATCTGAT
ATATAAGATAGTGAAACAGATAGCGGCGAGAGGTCGTCAACTTTATGATA
TTGTCAAGTCTAAATATTATAAACGGTTATTTTGTAAAGGGCCACCTGCT
GGTCTTACAGTATTGGAAGTAAAACATTTTTTTTCTTATAATACTTCAAC
TATCATCCACTCTGGATTAAGATACAGTAAGGCACATGAATAAAAATCAT
TTCAAATTTTAGAAATATTTTGATCAAGGGGAAGCTCACCGTACTTGACA
ATTTCTTAAATTTTGAAAAAAAGAAATCTTAGAGCGATTACGGATATTAG
TAAGAAAAACTTGAATCTATAAACGCCTTTGAGCTTTCAAAAGCAGTCAC
ATACAAAGGAAAGAGAATGGTGGGGAGGCAAGGCTAAAGAAATGTAAGGA
TCACTTGCAGAGGCTATTGTAAACACACAGGAAACTCTCGAAAGATATTT
TAGAATTTATTTTTAAATGGTAATGGTTGTATTGAGTTGACACGTCAATA
AAAATCAAATCCGCATTTTGAACTGGTGCTGATGTTAATTGTTATCAATT
CCTTTGTTTAAACTTCAAATAGGAAATTGAAAATATTTGATGTTTGTCAT
CATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTATTCCTGAACGGTG
GACCGGTAAGAACACTAATCCGAAATCAAGACATAGTTATAAACAGTACA
CAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTGAAAGATAAGAGCA
GTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTGCT
ACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGGTAAGTTTTG
TGACTTTTGTGACTTTTTTTGACGAAATTGGTTTTTAGAATGCATAATGG
TTCTCGAAATTTGTTCTCTAAATGCATTTTGAANATTAAATCAAAAGTTG
AAGATTAATAAAAAATCTACTGTCTACCTACCCACTTGTTTTTTTCAAAA
ACTTTCCATTTATCAGCAGTTTACTCTGATATTTTAATGAAATTTTACTC
TATTTCATTGAATTTTGTTTTGTATAGGGATTAGTACAAGTGCCAAGGAA
ATCAGTGATCAACGCTTGCCAATTTTTCTGATACACCAGTCTCCTCTTGA
AAAAATTGTCAACAACTTTAATCGAGTTAACCCTGTATCACTTTTTAAAA
CTTTAAAAGTCGGCTTCTGATTGGTTTATAGAACTATTGATAGGACGTGA
TTGTCCAATAGGATTGTATCTTGCTTCATTCCCAGTCATTCACAAGAAAA
GTTTGACGTAAGTGTGAAAAACATCCTAATCCAATTTTTGCGATAAAAAA
TCTAGCGCATCCTGATAATTGAAAAGACAAAAATCAACTTAATTACTCAT
TTAATTTCAAAAATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGG
GCTCGAATCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAA
AAGTAAAAATTGAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAA
CAATGAATAAAAAAATTAACAGGAAATCTTAACATTAATAACAATTAATT
TTATTATCTGATATATAAGATAGTGAAACAGATAGCGGCGAGAGGTCGTC
AACTTTATGATATTGTCAAGTCTAAATATTATAAACGGTTATTTTGTAAA
GGGCCACCTGCTGGTCTTACAGTATTGGAAGTAAAACATTTTTTTTCTTA
TAATACTTCAACTATCATCCACTCTGGATTAAGATACAGTAAGGCACATG
AATAAAAATCATTTCAAATTTTAGAAATATTTTGATCAAGGGGAAGCTCA
CCGTACTTGACAATTTCTTAAATTTTGAAAAAAAGAAATCTTAGAGCGAT
TACGGATATTAGTAAGAAAAACTTGAATCTATAAACGCCTTTGAGCTTTC
AAAAGCAGTCACATACAAAGGAAAGAGAATGGTGGGGAGGCAAGGCTAAA
GAAATGTAAGGATCACTTGCAGAGGCTATTGTAAACACACAGGAAACTCT
CGAAAGATATTTTAGAATTTATTTTTAAATGGTAATGGTTGTATTGAGTT
GACACGTCAATAAAAATCAAATCCGCATTTTGAACTGGTGCTGATGTTAA
TTGTTATCAATTCCTTTGTTTAAACTTCAAATAGGAAATTGAAAATATTT
GATGTTTGTCATCATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTAT
TCCTGAACGGTGGACCGGTAAGAACACTAATCCGAAATCAAGACATAGTT
ATAAACAGTACACAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTGA
AAGATAAGAGCAGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTC
ACACCACCTGCTACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGA
AGGTAAGTTTTGTGACTTNTCTAGCGCATTCTGATAACTGAAAAGACAAA
AATCAACTTAATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATTT
CAAAAATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGAA
TCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAAA
AATTGAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGAA
TAAAAAAATTAACAGGANCATTCTCTACCGATATATGCTTCAACATCAGA
GTCCTATAAAAATTGTACTGTCAATGATGGAGAATTTAAAAACGAATGCG
GGTTCAGCCTGCACATTGATAGTTGTGGTAGCAAGAATTTTTTGGTTTCA
TTTTTCTGAAGTATAGATACTAACAAGAAGGAAAATATCAGTATATCATT
ACACCATTCACCTTTTCGATTTTCATACAAAGGAATACCCTTTCTTCGCT
TTTTATGATTCTTATAGCACTCACGATTGTATCACGTCCATAAGTAAAAT
CAAAAAGTGGTGCAAGTGACTCTGGTTAGTTTGCGAGATTGAAAATTACA
GAGTTCTAAATTCTTAATATTTTTAAATTTAGATTTATCAGACATCGAAC
TTTCCAGTGTGGACGAAGATGATTTACAAGACTCATATTCAAAGAAACGA
AGGATACTTTTCACACGTCAACAGACATGGGAACTGGAAAGAATTTTTCG
ACAACAACCTTACTTATCTTCACCAGAACGTGAAGTATTAGCAAAGAAAA
TCAACTTGACTCCAACGCAAATTAAGATATGGTTTCAGAATCATAGGTAT
GTAGCGTCAGGATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGCCCACAG
CGTTGTTTCAACATTCATCTAACGTTGGACGGGGTTACAGATATTAGATA
GATTTTGATGGTAATATCAATCTCCATCAAGTTTCAGTCCGTTATTTTTA
CCCCAACTGACTGAAAAAATCCTACTGGATCTGTGAAAAGGGGGTGTATT
AATATAGTATGTATTAATTCAAATTATAAATTTTTATATTTGAAAATTTT
AAGAAATTAAATCAATTATTTTCAAATGATGAATAATTTTTCTTAATATT
TTTCATAGATACAAAATGAAGAAATACATGAAGGACATGATTCAACAAGC
TGAATATGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCACT
CACCACATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCAC
AGATCCTCATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCTT
TCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACGC
CCTCCTCGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGAA
TCGCCCCGTAAATCACCCTATTGGTCTTCAAGCAGCAGTTGCCCGCCCTC
TTTATCACTTTCTACTTCTACTGATAAACTTGTTTTCAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043740XLOC_043740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070252-exon-scaffold_516-1575043694:403293..403608TCONS_00070252-exon-scaffold_516-1575043694:403293..403608Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1575043694:399213..399426TCONS_00070252-exon-scaffold_516-1575043694:399213..399426Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1575043694:398517..398900TCONS_00070252-exon-scaffold_516-1575043694:398517..398900Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1510915933:403293..403608TCONS_00070252-exon-scaffold_516-1510915933:403293..403608Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1510915933:399213..399426TCONS_00070252-exon-scaffold_516-1510915933:399213..399426Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1510915933:398517..398900TCONS_00070252-exon-scaffold_516-1510915933:398517..398900Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1491911889:403293..403608TCONS_00070252-exon-scaffold_516-1491911889:403293..403608Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1491911889:399213..399426TCONS_00070252-exon-scaffold_516-1491911889:399213..399426Clytia hemisphaericaexon
TCONS_00070252-exon-scaffold_516-1491911889:398517..398900TCONS_00070252-exon-scaffold_516-1491911889:398517..398900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:398517..403608 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.359949	5.898	0.31816	1.29478	0.420618	0.873418	0	0	0	0	0	0.552524	0	0	0	0	0	0	0	0.442935	0	0	0	0
Blast
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BLAST of TCONS_00070252 vs. Swiss-Prot (Human)
Match: NKX21 (Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.469e-23
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:  376 KKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKKINLTPTQIKIWFQNHRYKMKKYMKD 558
            +KRR+LF++ Q +ELER F+QQ YLS+PERE LA  I+LTPTQ+KIWFQNHRYKMK+  KD
Sbjct:  162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222
The following BLAST results are available for this feature:
BLAST of TCONS_00070252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX218.469e-2368.85Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1... [more]
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