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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070238 ID=TCONS_00070238|Name=TCONS_00070238|organism=Clytia hemisphaerica|type=transcript|length=1553bp
gttttgtatatattttttattccggtctgtaaattttcaatcgaagccaa
gaaggaagacaaaatggcgccaggtctcttgagaagtaacaaagttcagt
acatTTGgcaaaaaggctattgtggctgaagttcgaaaggaatcttaaat
tttactacatggaatcattaacaagatgttgtaatagttatttccacatt
aaacaggtttcagatttcaaaagtttaggcaaaaagaggtaccccataac
ctagcccaattggctaccccattggctaccctgctttttagaccaaccct
gtTCTCCCAAGCTTGTAAGGAGtaagatatctgtttccctctcctggaaa
ttttcatctgtttcccttgctttttgtgattgatatctgttttcccccag
aaagttcaatctgtttctaatgcaatatcatctttttggaaatatatatc
tgtttcccaatttattatgtcatctcctagaaatattgatctgtttctct
ctgatgacgtcatcagctggagcggggaaacagatagttttaaggaaaag
gtctttcctagaaaatcagACCTGtttcccatttttcaaaaaaaggcact
ctcctggaaaagggaaacagatatttcggggaaatgggctcgttggctgc
ttctgggaatagacgttaattgcgtagaaaaaacgcgggtgacgtctagt
ataggctaataTCTAACGTGCGTTATCAGTAAGTTGGTGCCAATATCGAT
GTCGCGCATGCTCTCTATCATGTAAAAAAGGAGGCTTTGTCCCTCTTAGG
AATAACGAGCTGATCATTGCTGAGATGGTAGAGGAAGTGTGCAAAGACGT
TAAAGTTGAACCGATGCTATCAGAAATCCAGGAAGGCAAAGAAACGAGAG
GAAACCAATCGAAAAAAGCAAGACTCGACGTAAGCGCTGTTAGCTTTTAG
ACAAGGAGCCAACAGGCATTTTTCGACATAAGGGTCTTTGACACCTACAA
GCCCAGAGATACTGAAACCAAGAGCTTGCAAAGTGCTACGAAACAAACGA
TAAAGAGAAGAAAAGACAATACAACGAGAGAGTACTTCAAGTTGAAAATG
GAACATTCGCTCCCCTAGTCTTCTCCACGAATGGAGCAAGGGAAAAGAGT
GCATTGTATTCTACGTCTAGCGGGATTAGTCGCATACAAACGGAAATGTA
ATGTCAATGAAATTACGCGTCCAATATTCGcgcaaaactttgtttttcgc
TTCTTCGcgcaaaactttgtttttcgcTTCTTCGCGCAACAATACGGTGC
GTGCGAGGCTCGCAGTCGCGAAAGGTTATCTTGTTAATAACCTTGAGATT
GAGAGTTTGAAATGTTGTGAGCAGAATCTGTGATTGTAAACATTTTATAT
AGTGAAAACAATTATAACAGTATAAGTAGAAAATTACAGTGCGGGTAACG
ACCCAGGAAATTCTAATTGTACATATAAAATCTTTTTGTGTTTACGTACG
TGTAAATTTTTATTATGTAAGTgtagttttttttagaaatatataTGCTC
gag Run BLAST on NCBI transcript from alignment at scaffold_516:193264..194816- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070238 ID=TCONS_00070238|Name=TCONS_00070238|organism=Clytia hemisphaerica|type=transcript|length=1553bp|location=Sequence derived from alignment at scaffold_516:193264..194816- (Clytia hemisphaerica)
GTTTTGTATATATTTTTTATTCCGGTCTGTAAATTTTCAATCGAAGCCAA
GAAGGAAGACAAAATGGCGCCAGGTCTCTTGAGAAGTAACAAAGTTCAGT
ACATTTGGCAAAAAGGCTATTGTGGCTGAAGTTCGAAAGGAATCTTAAAT
TTTACTACATGGAATCATTAACAAGATGTTGTAATAGTTATTTCCACATT
AAACAGGTTTCAGATTTCAAAAGTTTAGGCAAAAAGAGGTACCCCATAAC
CTAGCCCAATTGGCTACCCCATTGGCTACCCTGCTTTTTAGACCAACCCT
GTTCTCCCAAGCTTGTAAGGAGTAAGATATCTGTTTCCCTCTCCTGGAAA
TTTTCATCTGTTTCCCTTGCTTTTTGTGATTGATATCTGTTTTCCCCCAG
AAAGTTCAATCTGTTTCTAATGCAATATCATCTTTTTGGAAATATATATC
TGTTTCCCAATTTATTATGTCATCTCCTAGAAATATTGATCTGTTTCTCT
CTGATGACGTCATCAGCTGGAGCGGGGAAACAGATAGTTTTAAGGAAAAG
GTCTTTCCTAGAAAATCAGACCTGTTTCCCATTTTTCAAAAAAAGGCACT
CTCCTGGAAAAGGGAAACAGATATTTCGGGGAAATGGGCTCGTTGGCTGC
TTCTGGGAATAGACGTTAATTGCGTAGAAAAAACGCGGGTGACGTCTAGT
ATAGGCTAATATCTAACGTGCGTTATCAGTAAGTTGGTGCCAATATCGAT
GTCGCGCATGCTCTCTATCATGTAAAAAAGGAGGCTTTGTCCCTCTTAGG
AATAACGAGCTGATCATTGCTGAGATGGTAGAGGAAGTGTGCAAAGACGT
TAAAGTTGAACCGATGCTATCAGAAATCCAGGAAGGCAAAGAAACGAGAG
GAAACCAATCGAAAAAAGCAAGACTCGACGTAAGCGCTGTTAGCTTTTAG
ACAAGGAGCCAACAGGCATTTTTCGACATAAGGGTCTTTGACACCTACAA
GCCCAGAGATACTGAAACCAAGAGCTTGCAAAGTGCTACGAAACAAACGA
TAAAGAGAAGAAAAGACAATACAACGAGAGAGTACTTCAAGTTGAAAATG
GAACATTCGCTCCCCTAGTCTTCTCCACGAATGGAGCAAGGGAAAAGAGT
GCATTGTATTCTACGTCTAGCGGGATTAGTCGCATACAAACGGAAATGTA
ATGTCAATGAAATTACGCGTCCAATATTCGCGCAAAACTTTGTTTTTCGC
TTCTTCGCGCAAAACTTTGTTTTTCGCTTCTTCGCGCAACAATACGGTGC
GTGCGAGGCTCGCAGTCGCGAAAGGTTATCTTGTTAATAACCTTGAGATT
GAGAGTTTGAAATGTTGTGAGCAGAATCTGTGATTGTAAACATTTTATAT
AGTGAAAACAATTATAACAGTATAAGTAGAAAATTACAGTGCGGGTAACG
ACCCAGGAAATTCTAATTGTACATATAAAATCTTTTTGTGTTTACGTACG
TGTAAATTTTTATTATGTAAGTGTAGTTTTTTTTAGAAATATATATGCTC
GAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070238-exon-scaffold_516-1575043694:193264..194816 | TCONS_00070238-exon-scaffold_516-1575043694:193264..194816 | Clytia hemisphaerica | exon |
| TCONS_00070238-exon-scaffold_516-1510915933:193264..194816 | TCONS_00070238-exon-scaffold_516-1510915933:193264..194816 | Clytia hemisphaerica | exon |
| TCONS_00070238-exon-scaffold_516-1491911889:193264..194816 | TCONS_00070238-exon-scaffold_516-1491911889:193264..194816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:193264..194816 - |
Blast
The following BLAST results are available for this feature:
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